Basic Information

Insect: Xylota segnis
Gene Symbol: -
Assembly: GCA_963583995.1
Location: OY757237.1:59954847-59956832[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2e-05 0.0009 19.6 4.5 1 23 223 245 223 245 0.97

2 12 0.00015 0.011 16.1 7.3 1 23 252 274 252 274 0.97

3 12 4.4e-06 0.00034 20.9 0.7 1 23 292 314 292 314 0.99

4 12 6.5e-06 0.00049 20.4 2.1 1 23 324 346 324 346 0.98

5 12 6.8e-06 0.00051 20.3 0.8 2 23 353 374 352 374 0.96

6 12 0.00053 0.04 14.4 7.1 1 23 380 402 380 402 0.98

7 12 9.9e-08 7.5e-06 26.1 0.6 1 23 408 430 408 430 0.95

8 12 0.00032 0.024 15.1 2.0 1 23 436 458 436 458 0.99

9 12 1.3e-05 0.00096 19.5 2.6 1 23 464 486 464 486 0.98

10 12 0.0048 0.36 11.4 8.2 1 23 492 514 492 514 0.99

11 12 1.1e-05 0.00086 19.6 0.8 1 23 520 542 520 542 0.98

12 12 1.2e-05 0.0009 19.6 0.7 1 23 548 570 548 570 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2e-05	0.0009	19.6	4.5	1	23	223	245	223	245	0.97
2	12	0.00015	0.011	16.1	7.3	1	23	252	274	252	274	0.97
3	12	4.4e-06	0.00034	20.9	0.7	1	23	292	314	292	314	0.99
4	12	6.5e-06	0.00049	20.4	2.1	1	23	324	346	324	346	0.98
5	12	6.8e-06	0.00051	20.3	0.8	2	23	353	374	352	374	0.96
6	12	0.00053	0.04	14.4	7.1	1	23	380	402	380	402	0.98
7	12	9.9e-08	7.5e-06	26.1	0.6	1	23	408	430	408	430	0.95
8	12	0.00032	0.024	15.1	2.0	1	23	436	458	436	458	0.99
9	12	1.3e-05	0.00096	19.5	2.6	1	23	464	486	464	486	0.98
10	12	0.0048	0.36	11.4	8.2	1	23	492	514	492	514	0.99
11	12	1.1e-05	0.00086	19.6	0.8	1	23	520	542	520	542	0.98
12	12	1.2e-05	0.0009	19.6	0.7	1	23	548	570	548	570	0.97

Sequence Information

Coding Sequence: atggaaataattccatctaattttaataaaatatgccGTACTTGCATGAGAATAAATACAGATTCACTGCAGCAAATATTTGAATCAAAAGTCGACACAACAAACCaaaagatatgtacatcagaAGTGCTCACCACGGTTTCAGCACTTGAATTCGATCCAAGTGATGCCCTTCCCAAGGGAATCTGTACCGAATGCCTTGACATCTTGGTAAAGGCATATAATTTCAAGAAAATGTGCATAAAATCAGATATCTGCATGCGCAGTGCCTTATCAGAGAAACTTCTCATGGAACAAAAAATCAGTACCGACATTTTACTGACCGAATTGTTATCACCACAAGTTTGCACCGACTTGTTGGATGGTAGTGGGACTCTGAAAACAGAGAAGTCCACAGATGACTATGGAGATAAAGAAGAAGTTTCCGCGAATGTCGTGGAAGCAATGCTGGAATTGAGTTCCGCTGGTAATGTGGCTGCTATGAAGAAAGAATGTGAGGCAAACACAACAATAAAATGCAATATTGACGCAGAAGAGGATTCGGACAATAGTATGGACTTAAATAATGATGAAGAAGATGTGAAAAGCCTACCGGATACTACTACTACCAGTCCAGTTGATGTAGAAATCGAAAGGCCAAATCCTCGTAACCGTCGAAGTGCATGTCATACTTGCCAGGCGTGTGGCAAATCCTTTGACCGTCAACACCGTCTGAACCGTCATATGAACGTACATAAGACGGAGGGACGACCACATGAATGCAAACACTGTAAGCGTCGATTTACCAAAGAAGCACACCTCCAAAGGCACGCGATAACCCATGAgaagaattttcaagaaaaagcaGAGCAATTTAAACAGAACCCTGATGGATTTAAGTGTCCTGAATGCCCCCGGAAATTCTTAAAACAAGAATCACTGGCTTCACATATGCGTACACATCGCAAAAATGCAGATCCAGCAAAGAGCTACAAATGCGAAATTTGTTCAAAGGTCTTCGAAAGATTGTATCGCCTGACAAGGCATAGGAAGCTGCATGAGGAGAATCGAAAACTGAATTGTGACATTTGCGGGAAGACATTTGGCCTGAGTTCACATCTCATTGATCATCTTAATAAGCACAGCGGTGTTAAGCCTCACGTTTGCCATTATTGCGATAAATCTTTTCTTCAAGCGTGTACACTTAAGGACCATTTGCGAACACACACCGGTGAACAACCATTCCTTTGCTCCGAGTGCGGCAAGGCTTTCAACAACGCGAGCAACCTGCGTCAGCACCAATTACGACATACTGGCATCAAGCGCTACCAGTGTCCGGAGTGTCCCAGCAAATTCACATGCAAAAGCGGACTTTCATCGCACATGAGTACTCATCGTAATCAAAAGCCATATGTTTGTGATATTTGTGGATCAAGATTCACCAAACACTACTCGCTGAAGAAACACGAACGAATACACACCGGTGAAAAGCCATACAAATGTGATTACTGTGAGATGAGGTTTAACTGCTCAGATCACATGAAGCGCCACAGGCGGACGCACACTGGAGAGAAACCTTACGCTTGCAGATACTGCGAACGGACATTTGCCCAGTCGAACGATATGATAAAACATCTTCGATCGCATGTAGGTGAGAATGTCTACAAATGTGAACAATGTGATGCATCATTCCGATTGAGTACAGAACTGAAAAGGCACATAACGGAGCACTATAAAGTCGAAAAAGCTCAAAAGGACAGTCTGCCAAATAGCACGTAG
Protein Sequence: MEIIPSNFNKICRTCMRINTDSLQQIFESKVDTTNQKICTSEVLTTVSALEFDPSDALPKGICTECLDILVKAYNFKKMCIKSDICMRSALSEKLLMEQKISTDILLTELLSPQVCTDLLDGSGTLKTEKSTDDYGDKEEVSANVVEAMLELSSAGNVAAMKKECEANTTIKCNIDAEEDSDNSMDLNNDEEDVKSLPDTTTTSPVDVEIERPNPRNRRSACHTCQACGKSFDRQHRLNRHMNVHKTEGRPHECKHCKRRFTKEAHLQRHAITHEKNFQEKAEQFKQNPDGFKCPECPRKFLKQESLASHMRTHRKNADPAKSYKCEICSKVFERLYRLTRHRKLHEENRKLNCDICGKTFGLSSHLIDHLNKHSGVKPHVCHYCDKSFLQACTLKDHLRTHTGEQPFLCSECGKAFNNASNLRQHQLRHTGIKRYQCPECPSKFTCKSGLSSHMSTHRNQKPYVCDICGSRFTKHYSLKKHERIHTGEKPYKCDYCEMRFNCSDHMKRHRRTHTGEKPYACRYCERTFAQSNDMIKHLRSHVGENVYKCEQCDASFRLSTELKRHITEHYKVEKAQKDSLPNST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00310456;
90% Identity: iTF_01542378;
80% Identity: -