Xseg009089.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota segnis
Gene Symbol
grau
Assembly
GCA_963583995.1
Location
OY757237.1:110784721-110794341[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 2.2 1.6e+02 3.0 0.1 2 23 224 246 223 246 0.95
2 25 0.022 1.7 9.3 0.9 6 23 255 272 255 272 0.98
3 25 3e-05 0.0023 18.3 2.1 1 23 278 300 278 300 0.99
4 25 3.3e-06 0.00025 21.3 6.4 1 23 307 329 307 329 0.99
5 25 0.0024 0.18 12.3 4.2 1 23 334 357 334 357 0.95
6 25 6.8 5.1e+02 1.5 0.4 2 23 366 388 365 388 0.84
7 25 0.0001 0.0077 16.6 0.5 1 23 395 418 395 418 0.95
8 25 0.068 5.2 7.7 0.2 1 17 424 440 424 440 0.91
9 25 0.014 1 9.9 0.2 2 23 685 707 684 707 0.96
10 25 0.058 4.4 8.0 0.1 6 23 716 733 716 733 0.99
11 25 0.0078 0.59 10.7 1.3 1 23 739 761 739 761 0.98
12 25 1.9e-05 0.0014 18.9 1.4 1 23 769 791 769 791 0.99
13 25 2.7e-05 0.0021 18.4 0.3 2 23 798 820 797 820 0.95
14 25 1.8e-06 0.00014 22.1 0.5 3 23 828 848 827 848 0.96
15 25 0.00021 0.016 15.7 0.2 2 23 857 879 856 879 0.95
16 25 0.0011 0.082 13.4 0.1 1 23 886 909 886 909 0.94
17 25 0.0069 0.52 10.9 0.3 1 16 915 930 915 931 0.87
18 25 2.1e-05 0.0016 18.8 1.6 1 23 1226 1248 1226 1248 0.99
19 25 0.058 4.4 8.0 6.3 1 23 1256 1278 1256 1278 0.98
20 25 5.1e-06 0.00039 20.7 0.3 1 23 1286 1309 1286 1309 0.96
21 25 0.0047 0.35 11.4 0.2 3 23 1317 1337 1316 1337 0.96
22 25 5.1e-05 0.0039 17.6 0.7 2 23 1346 1368 1345 1368 0.97
23 25 0.00046 0.035 14.6 0.1 1 23 1375 1398 1375 1398 0.94
24 25 1.4e-06 0.0001 22.5 1.0 1 23 1404 1426 1404 1426 0.98
25 25 3.4e-05 0.0026 18.1 5.0 1 23 1432 1455 1432 1455 0.98

Sequence Information

Coding Sequence
ATGCTCTGCATCTTGTGCGTAACTGCAAGGGATCCACTAATACAAGTATTCGACAAAGACGGCCTCAGTCGCCACATCAACGAAATAATAAAGAAGCACTTTTGGCTACAGCCAAATGCAGAAGATGCGAACGCCAGAGCAATCTGCTGTTCCTGCTGGAGCGCCTTGAATACATTTCATAGATTCTACCAGGAAGTGGAACAAGCTCATGCCAGGCTGGTCAAAGTAAAACTCCCCATCGAAGATGATGTGTCGGATGCAGATCACTTCGATGCATACAATGAGTTCTTCAGCGAAGATGTTAAGGTGGAGTCATATGAGGATCCTAAATTAGAACTGCCACAGTACGATGAAGAAGTGGCCCAATTGGCCCAATTTACCAAAAGGGCTGACACAGCACGCTCAAAGTCTGATTCTGAATCTGATGTTCCTTTGGTTAGGCTAAGTAGACAACGAAGCTCAACCAGAAATCATAGTTATGCCCAAGTCACTGCCGATGACAGTGATAGTGGCTCTTCCACCAAAAGAACCCGAAAAACGAGAATCCCCGATGACTACGAGAAACCTAAAAGCAAATTAAACCGATTCGTGTCCGACGATTCAACATACAACAAGAGGAAGATTTCCTGCAAGGAGTTCGACAAACTTATCAAACAGAACATGAAATTGTCGTGTGAACTTTGTCGTGAACCATTGGCTAGTTTCTTCGTCCTCAAGGAACACTATCGTTCAGTTCACAATGAGACCGGTTACGTGAATTGTTGTGATAAGAAGTTCGACAGCCGACATTCCTTGGTCCAGCACATACTGCTGCATCAGAATCCCGATTTCTACAAGTGTGAAAAGTGTGGCAAGATTCTGACCAAtatgaaaagtttgaagaaccACTTGAAGAAGCATTTACACGACAAACACATCTACCAATGCGACACGTGCAAAAAGAGTTTCTGTAAAAAGGAGAAGCTTGAGCGGCATATGAAAACTCATGTGAGTGTGGATCACATTTGCGAGCATTGCGGGAAGGTAATACGGGGCAGACATAGTCTGAAACAGCATCAACTTCGAGAGCATTCGGTCATACCAAGGCAAAGGGTGCAGTGTGAGAAATGTGGCGTTTATCTGGCGGATAATTCAAGTCGGAGTTTTCATATGAAGTATCAGCATCCGGAGAATGATGTGGTACATGTGTGTAATATTTGCGGAAAGGTATCTACTACGGGCTACGGACTGAAGCGTCACATATTGTACATGCACAAATGTGGCCGGCCACACAAGTGCGCAATGTGCGAGAAGGCGTTCAAGACAGCACAGAAACTTAGGCCGAATGTAGACGATGTGAATGCAAAAGTTATATGTACGTCCTGTTGGAGGGCATtggacagctttcataaattcTATCTGCAAATTGAGGAAGCGCATGTTACGCTACAAAAAGCCATCGAAAAAGATGAGCTAAAAGTAGAGCATGAAACAGTAGCACCACTTATTAGTATCCCTGATCCTGACCCATTCGATGTGGTTGCATCGGAGCTACTGGATGCAGACATAAAGTTAGAAGTTCCGGAAGACGCCACCGAAATAAAGCCACCACTAGACGCTGTCCAAAGTGAGGTCGTCAAGAAAATAGAATCTGTAAAAGATTCGCCTcctaaaagaaaacattccgCAGATTCAAAGAAGTCAGACAGTGAGGCTGGACCCCCTGCAACTCGTTCTACACGAAGTCGAACAGCGGAGAAAGTATACGCAGGCAGTGACTCTTCCAGTGACGATGATCCTGACGACGATAAGGGTGAAGTTGAAAGGCAGAACTCTCCTGACTGGCAAAATGCGAATacagacaacgacgacgaagacagTGACTACGAGGACCTCgccacaaaaacgaaaaagcaGAAGGTAACTACGAATGCAACAAAAAAGCGAGGTCGACCCAAGAAGGGTGAAGTCAGGGAAACTCCTCGCAAGAAAAAGCGGACCTCCGAGGAGCACTCTAAGAAAATGGAACGAATACAGGAGTACGATGAAATGATTGCAAAAAACATGAAACTCACGTGTACCGTCTGTTTGGCTGCATTTCCTAATTTTAATGTTCTGAAACGACACTATCGTACCGTTCACAACGAGTGTGGCTACGCGGTGTGCTGTGGCAAGAAGTTTCGCAAACGCGGTGTACTTGTCGACCACATCTACACTCACCAGAATCCTGACTACTTCAAGTGTGAGAAATGTGGCCGAGTGTTGGCGAATAGAAAAGGCCTGGATTGCCATATGCTAACGCATGACACCGAGAAACAGCGCATATATCAATGTGATCAATGCACATTGAGTTTCTACACGAGACCCCTGCTGACGCGACACTTGCAAACGCATATTTCTGAACGCAACATCAAGTGTCCAGACTGCGACAAGTTCTTCTCCACTCAGGACATCTTGCGTACGCACATAAACAATGTGCACAACGCGGCTTACACTAGAATCTGCGATCAGTGTGGTAAGTCGTTTCGCCGTCCTGATGCTTTTCGTCGACATCAGTTGGAGCATGATGGCATAACTCAGCCACTTGTTCCATGTGAGAAATGTGGTGTCAAATTGACGAGCAAATATGGTCTCAAACGGCACATGGAATCGATGCATCCCGAAACGGAAGTGACGCATGTATGCAATACGTGTGGGAAGATTGCACCCAGTGCTGCAGCACTGCAGCGGCATATCTCCTACATGCACAAAATGGAACGGAAATACAAGTGTCCCATGTGTGACAAGGCGTTCAAGAAAACCGGTGGACTTAAGCCAAATAAAAACGATGAAGACGCTAAATTTATCTGTGGCTCGTGTTGGAATGCGCTGGAATCGTTTCACAAGTTCTACCTACAAGTGGAGGAGGCACATATATCTTTGGTGAAGACGAGCACCACCGCAGACGATGGTTTGAAACAAGAGGAGGATCAAATAGCCGCTCGAGCTGATGCGGAGGATAATGAGAAATTCGATCCGTGTACGGATTTTTTATCTGCAGACGTCAAGCTCGAGGTGAAAGAAGATGGTGAAGTCTGCCTGCCGCAATACAATCCACTTCCTGACCTCGATGAAAAAATCGATGTCAATCAAGTCTCGAAGAGTAACGAAATATCAGACTCCAGCGACTCTGAATCTGAAATACCGCTAGCGAACCTAGCTAAGGCAAGatctaaaaaaagaatcaaaacaaAGCCAGCAACATCGAGCAACGATGATGTGAACTCATCCACTGAATGGCAAGACCATCAGTctaacgatgatgatgaggaggatgatgacgacgatgatgcgAGTGATGCCGAAGTGAAGAAACTGGCAGCAAAAGTCGCCTCATCGAAACGAAAAGGATTAACAAAGGCGGGTAGGAAACGAGGTAGGCCGTGTAAAAATGCACCCAAAGACACAACGCCCAAACAAACCACAGAAGAGCAAATCAAGAAGCGAGAACTCTCCCAGGAATACGATGAAATAATCCAGAAAAACATGAAGTTAACGTGTACTGTTTGCTTGCTACCGTTGGCCaactttttcattttgaaaaagcATTATCGGTCCAAGCACAACGAACGGGGCTATGCTTCATGTTGCGGCAAGAAATTCCTCAAGCGTGGCATCCTGGTTGACCATATTTATACTCATTTGAATCCGGAGCACTTCAAGTGCGACAAATGTGATAAGGTGCTCGCCGATAGGCGATGTCTCGAGGTGCATATGAATACGCATATAACGGAGAAACAGCGCATATATCAATGTGATCAGTGTTGTAAGAGTTTCTTTAAGAAACCACTGCTCACACGGCACCTACATATTCACATACCCGAGGAGGAGCGTAAATTTCCCTGCGAGGAATGCAATAAGTTCTTTCCGTCGAATTATACACTGCGGGCGCATATCAACAACGTGCACCAGAATGCGTATGCGAAAATCTGCGATCAGTGCGGCAAATCAATTCGCGGACGAGAAGCATTCCAGAGGCATTTGCTGGAGCACGCCGGTGTGCCAATACCCAGTGTACAATGCGACAAGTGCGGTGCGAAGTTGAAGAACAAATACGGTCTTAAGAGGCACATGAACTCGATGCACACAGAGTCCAATGTGCCGCACGTATGCAATATATGCAACAAGGTTGCACCCAATCCGGCCGCATTACAGCGCCACTATTCGTATGTGCATAAGTGTGAACGAAATCACAAGTGCCCCATGTGTGACAAGGCTTTCAAAAAGGCCGGTGGACTTAAGGAGCACATGACAACCCACACGGGAGAGGTCCTCTACACGTGTCCACACTGCCCGAAAACATTCAACTCCAATGCCAATATGCATTCACATCGAAAGAAAATGCATCGCAAGGAATGGGAGGAGAATAGAAGGCATCCACACATGGGATCTGCTACAAACGCCGAATAA
Protein Sequence
MLCILCVTARDPLIQVFDKDGLSRHINEIIKKHFWLQPNAEDANARAICCSCWSALNTFHRFYQEVEQAHARLVKVKLPIEDDVSDADHFDAYNEFFSEDVKVESYEDPKLELPQYDEEVAQLAQFTKRADTARSKSDSESDVPLVRLSRQRSSTRNHSYAQVTADDSDSGSSTKRTRKTRIPDDYEKPKSKLNRFVSDDSTYNKRKISCKEFDKLIKQNMKLSCELCREPLASFFVLKEHYRSVHNETGYVNCCDKKFDSRHSLVQHILLHQNPDFYKCEKCGKILTNMKSLKNHLKKHLHDKHIYQCDTCKKSFCKKEKLERHMKTHVSVDHICEHCGKVIRGRHSLKQHQLREHSVIPRQRVQCEKCGVYLADNSSRSFHMKYQHPENDVVHVCNICGKVSTTGYGLKRHILYMHKCGRPHKCAMCEKAFKTAQKLRPNVDDVNAKVICTSCWRALDSFHKFYLQIEEAHVTLQKAIEKDELKVEHETVAPLISIPDPDPFDVVASELLDADIKLEVPEDATEIKPPLDAVQSEVVKKIESVKDSPPKRKHSADSKKSDSEAGPPATRSTRSRTAEKVYAGSDSSSDDDPDDDKGEVERQNSPDWQNANTDNDDEDSDYEDLATKTKKQKVTTNATKKRGRPKKGEVRETPRKKKRTSEEHSKKMERIQEYDEMIAKNMKLTCTVCLAAFPNFNVLKRHYRTVHNECGYAVCCGKKFRKRGVLVDHIYTHQNPDYFKCEKCGRVLANRKGLDCHMLTHDTEKQRIYQCDQCTLSFYTRPLLTRHLQTHISERNIKCPDCDKFFSTQDILRTHINNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGITQPLVPCEKCGVKLTSKYGLKRHMESMHPETEVTHVCNTCGKIAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKPNKNDEDAKFICGSCWNALESFHKFYLQVEEAHISLVKTSTTADDGLKQEEDQIAARADAEDNEKFDPCTDFLSADVKLEVKEDGEVCLPQYNPLPDLDEKIDVNQVSKSNEISDSSDSESEIPLANLAKARSKKRIKTKPATSSNDDVNSSTEWQDHQSNDDDEEDDDDDDASDAEVKKLAAKVASSKRKGLTKAGRKRGRPCKNAPKDTTPKQTTEEQIKKRELSQEYDEIIQKNMKLTCTVCLLPLANFFILKKHYRSKHNERGYASCCGKKFLKRGILVDHIYTHLNPEHFKCDKCDKVLADRRCLEVHMNTHITEKQRIYQCDQCCKSFFKKPLLTRHLHIHIPEEERKFPCEECNKFFPSNYTLRAHINNVHQNAYAKICDQCGKSIRGREAFQRHLLEHAGVPIPSVQCDKCGAKLKNKYGLKRHMNSMHTESNVPHVCNICNKVAPNPAALQRHYSYVHKCERNHKCPMCDKAFKKAGGLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRHPHMGSATNAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-