Xseg012634.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757238.1:54178116-54180057[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.7e-15 1.4e-11 43.9 0.0 3 43 289 329 287 331 0.91 2 3 0.0063 11 5.8 0.0 27 37 360 370 351 375 0.87 3 3 3e-17 5.4e-14 51.6 0.0 3 41 398 436 396 438 0.93
Sequence Information
- Coding Sequence
- ATGAATCATCTTAAATGGATGGGCCATACGGCAACCATCCTTGATATCCAGAAAACTCTTAAATATGATGCATCCACTTGTGACATTACCCTCTCGTGTCGAGGTAAATCAGCGAAAGCCCATCGCTTTGTACTGTCATCATGCAGTGATCTACTGCGGGATCTTCTTAGTGATGTGCCCACCGGGCAGGAGGCTACTCTAATAGTACCCGATGTTAAAGGAAATCTACTGGACTGTGTTTTGAGTTTTGTGTATATGGGAGAGACAAGCTTGTCGTCAAcgaatttgtctgaatttctCGAGGCCATCAGTATACTTGGCATAAAGAGTGCCATCAGTTTTGAATGTGCGAACAGTAGTAGTTCGGCGAATAGTAGCAAAAATGTTGCCGAAATGACCGAAATGGAAGAGGAATTAATGGAGGCCGAACCAGAGCAGGAAATTGTAGAAAAAGACGAAgaagagGATCAAACAGTTGCTGAAAGTAGCAGCGTACGTGAGTTGGAGTTTCTTGAAGTTTACaatgaacaagagaaaattagCTACACAATTGAGAATATCACCCCAACCAATCCCAACGAATATATTCTCACAGAAAGTTCTGGCACCTTTACCCTCACACCAAATGCAAAAATCGATGCCACTGAGGTGGGGGCACTTGTTGAAAAAAGCGAAGAAGACAATACCATGATGGAACACTATGTTGGCGATCCAATAGGCGACAGTAGTCAGTGCTCCAGTACAGATATGAAAGAGGATAAATCTAGTAAAAACCTAAAAGATGAATTCAGTGAATTTCAAGCCCTCAGTCCGGAGGATTCCAAGGGATATCAAAACTTCAACGAAACCCAATCGGCACGCGTCGAAGCATTGGAAAATGCCGTTCTTGCCGTTGTTGACGAGGGTATGAGTTTACAAAAGGCCGCCGTTAAatacaacatttcaaaaacCGTTCTTTGGCGACGAGTGAAAAAGCATCCGCTTTACATGAAAACAACACGTGAGAATCCACTTATAACAGCAGCGTGTGAACGTTTAAAAAACGGAGATTCTTTAAAAAGTATTAGCCAAGCGCTAGACATTCCCATGTCCACATTACATCGACACAAAGTACGGCTTGCACAGGAGGGAAGATTGCCAGAATATGTAACATTCAAGAAACGCGGCCCTATGTCAAAAgaaatgttaaaagaaaaactcaaaaaagcaGTGCAAGCTTGCCTAGGCAACGGCATGTCACAGAATCATGCGGCAAATGTGTTTGATGTACCAAAAAGCACTTTATGGCGacatttgcaaaagaaaatgTACCGAGCTGATAGCTCAAACGATATAAGCATTAAGGAAGAAGTAGTTTTACCCTAG
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKYDASTCDITLSCRGKSAKAHRFVLSSCSDLLRDLLSDVPTGQEATLIVPDVKGNLLDCVLSFVYMGETSLSSTNLSEFLEAISILGIKSAISFECANSSSSANSSKNVAEMTEMEEELMEAEPEQEIVEKDEEEDQTVAESSSVRELEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNAKIDATEVGALVEKSEEDNTMMEHYVGDPIGDSSQCSSTDMKEDKSSKNLKDEFSEFQALSPEDSKGYQNFNETQSARVEALENAVLAVVDEGMSLQKAAVKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLKKAVQACLGNGMSQNHAANVFDVPKSTLWRHLQKKMYRADSSNDISIKEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00310168;
- 80% Identity
- iTF_01541562;