Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730481.1:49342578-49349632[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.4 29 6.2 1.3 1 23 214 236 214 236 0.86

2 14 0.93 68 5.1 0.3 5 20 305 320 302 322 0.92

3 14 0.79 57 5.3 3.8 1 23 360 382 360 382 0.98

4 14 0.00025 0.018 16.3 1.8 1 23 388 411 388 411 0.97

5 14 0.00076 0.055 14.8 2.2 1 23 415 437 415 437 0.97

6 14 0.48 35 6.0 0.2 1 23 443 468 443 468 0.96

7 14 2.5 1.8e+02 3.7 1.4 1 23 522 545 522 545 0.90

8 14 0.071 5.1 8.6 0.3 1 23 852 874 852 874 0.95

9 14 1.3 96 4.6 1.8 3 23 918 938 917 938 0.87

10 14 5.5 4e+02 2.7 0.2 5 20 947 962 944 964 0.92

11 14 0.65 47 5.6 3.8 1 23 1002 1024 1002 1024 0.98

12 14 0.001 0.076 14.3 4.2 1 23 1030 1053 1030 1053 0.97

13 14 8.4e-05 0.0061 17.8 0.4 1 20 1057 1076 1057 1079 0.96

14 14 0.0092 0.67 11.4 0.2 1 23 1085 1110 1085 1110 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.4	29	6.2	1.3	1	23	214	236	214	236	0.86
2	14	0.93	68	5.1	0.3	5	20	305	320	302	322	0.92
3	14	0.79	57	5.3	3.8	1	23	360	382	360	382	0.98
4	14	0.00025	0.018	16.3	1.8	1	23	388	411	388	411	0.97
5	14	0.00076	0.055	14.8	2.2	1	23	415	437	415	437	0.97
6	14	0.48	35	6.0	0.2	1	23	443	468	443	468	0.96
7	14	2.5	1.8e+02	3.7	1.4	1	23	522	545	522	545	0.90
8	14	0.071	5.1	8.6	0.3	1	23	852	874	852	874	0.95
9	14	1.3	96	4.6	1.8	3	23	918	938	917	938	0.87
10	14	5.5	4e+02	2.7	0.2	5	20	947	962	944	964	0.92
11	14	0.65	47	5.6	3.8	1	23	1002	1024	1002	1024	0.98
12	14	0.001	0.076	14.3	4.2	1	23	1030	1053	1030	1053	0.97
13	14	8.4e-05	0.0061	17.8	0.4	1	20	1057	1076	1057	1079	0.96
14	14	0.0092	0.67	11.4	0.2	1	23	1085	1110	1085	1110	0.96

Sequence Information

Coding Sequence: ATGTATGCGTGCAGTATTCATTTTGATGGTCTATACTTGACTCAATCGAAAGGACTTTTAAAATTGGGTTTACCAATATTATTTTTACCGACTGATAAGTCGAAAGATGAGATATCCGCTCAACCAAAGATATCTAATATAAAACCAACAACGCCAGCACTAGCAGTAAGTGATCCACTTTCCACTAACAGATGTGAGATCGACGAGGATCCATCAAACAGTTCACAGTCAGCACAACTAGTACCAATAAATTCGCCAACACTCCAAACAGGGGGAAAAATTTCACAAACCGAGTCTCCTAAAAGAAAAGaaagttCATCATCAGCTGGAAGTCCAACCAATTTAACTAAGATTTCGGAAGGAAATGTGGAAAATACCATTTCAGCTGAAAAAGATGCGATAGAAACGGATAACAATGATAAAGTTCTTAACCCGCGTATTTGCGAAGATGAAGCTTCTTTAGAATCGAGTATTTTTGGCAATCAAAATTATTTACCACATTCATCCGATTACCGTCCACAATCGCCACCTGATCCAAGCACACTCACAGACAATTCAGATGATGAATTTGAATCATACTTTATTTTTACAGATAAAAATATTCAACCtcgtaattataaattaaatgaaaatggtCGTTACGAATGTTTATTATGcgataaaaatttcgattctCAGTTGCTTATAGTAAAACATTGTGAAACTCATGAGGAAAAATCAAGACTATGTCATATATGTGGAAAACTGGTAGAACAACTTGCAATCCATATAATATCATGCAAAAACAACATGAATTACCGGAAACTATCATTACAAGATCGTATGTGTTCATATTGTGGAGTGTTAAGTAGAGATATTTTTCGCCATAGAGAACACCTTAACTCgcatactggtgagaaaccatATCAATGCGTGTGTGGTTCACGATTTACAGCATCGTCAAATTTTCGTGCACATCGTGTGAAATTTGGTTGTCCGCATCCACCAAAGAAAAGTCGAGAAAGGGTAACATCAAAAGAGATTGAACATCTCAAAACGCCCGTAAAGGCACGTAAAAGTAGTCGGGATCCAAATCgttatgtttgtaaagaatgcAATTTACAATGTGGAACTTATGATAAATATCGTTTTCATATAAGAACGCATGTAAcagaaagaaattttatatgtcAATTATGTAATAATAGTTATCGTAATAAAAGTTCGTTAGATAATCATATAAGACGGAAACATTTACGGAAATATAAATGTACAACTTGCGATAGAACTTTCGATACTGAAGGAAGATTACACAATCATTTATTAGAACATCAAACAGATAATTCATTTCGTTGTGATTTATGTAATAATGAGGAGCGTTTTCCAACATTATTAGGCCTGCGTCTTCACCAGCGTGAAATTCATAGgggaataaaaaaagaaagaaagtctAATAAATTTGTATGCGTATTGTGTGAGATTTCTTTTGAAGGGTCACGGAAAACTTTACTGCATCATTTAAGAAAAAACGAATTACATATTAAAACTGAAACCGAATGGaaactaaaatataatattaaagatTATAAATGTTCGTTTTGTTCTAAACTTTACGATACTTTTCTGGATTATTCTCTTCATATGGGCTTGACACATACAAAACATATATTAACGAAAATGGAAAACTGTTTTGAAGATTTTCAATCATTGAAAAATGttgaaacttttaataatgatatTATTATGAAGGATTCTAATAAGAGTAATAATGACAAATGTATATTAAGTGAAAATGTTACAACAGAAACAAGATCAGACCATTTAAAGGCAGATAAAGATGATCATCTCTTATTTTTACCAATTGAAGAGTCTATATTTGAGATTTCCGCTTCCCCAAATATATCTAATATAAAACCAGTAAACCCAGAACCGACAGTAAGCGATCCACTTTCCAATTACTGTGGAAACGAGGTGGAATTAGATCCTCTTTTGGATTATTGTACATGCGAATGTGAGTTTGATGAATCACCGAATTTACCGGAGAATTCGGGATCGACAGAAGAACCAGCGACTATTGATCCATATTCTAATTATTGTACTTGCGGATGTGAAATCGATGAAAACACATTAAACAGTTCAGAGTCAGCACAAGTAGTATCaataaattcttcaattttGGTTACAACATCTCCAACACCCCAAACAGTgacaacaaataaacaaacaggGTCTCCTAAAAGAAAAGGAACTTCATCATCAGCTGAAAGTCCAACCAATTTAACTAAGATTTCGGAAGGAAATGTGGAAAATACCATTTCAGCTGAAAAAGATGCGATAGAAACGGATAGCAATGATAAAATTCTTAACCCGCGTAGTTGCGAAGATGAAGCTTCTTTAGAATCGAGTATTTTTGGCAACCAATATTATTTACCACATTCATCCGATTACCGTCCACAATCGCCACCTGATCCGAGCACACTCACAGACAATTTGGATGATGAATTCGAATCATACTTTATTTTTACAGATAAAAATATTCGACCtcgtaattataaattaaatgaaaatggtCGTTACGAATGTTTATTATGCGATAAAATTTTCGATTCTCAGttgtttataataaaacatTCTGAAACTCATGAGGAAAAATCAAGCTTATGTTATGTATGTGGAAAGCTAGTGAAACTACAGCTCACAGCTCATATAACAATATGCAAGAACAACACGCAAAGTATAGGCCACCGGATACCAACATTACAAGATCGTATATGTCCGTATTGTGGTAAAGTAAGTCCAAGTATTTTTCACCATAGAGACCATCTTAATTTCcatactggtgagaaaccatATCAATGCGTGTGTGGTTCACGATTTGCGGGATCAGCAAATTTTCGTACACATCGTGTGAAATTTGGTTGCCCGCATCCGCCAAAGAAAATACGTGAATCAAGAAGGCGTACAAATGTTCAACAACCTAAAACACCAAAAAGAACACGTCAAAGCCGTTTGGATCCGAATCgttatgtttgtaaagaatgcAATTTACAATGTGGAACTTATGATAACTAtcgttttcatataaaaaagcaTGTAAcagaaagaaattttatatgcCAATTATGTAATAAAAGTTATCGTCATAAAAACATGTTAGATaatcatataaaaaagaaacatttatataaatataaatgtacaaTTTGTGATAGAACATTCGATACCGAAggaaaattacgaaaccatttACCGGAACACCAGACCGATTATCCATTTCGTTGTGATTTATGTGAAAATGAAAAGCGTTTTCCAACATTATCAGGGCTACGTATTCATCAGCGTGATATTcatatggaaataaaaaaagaaaaagaaaagaaatcgtTTTGCAGGGGAACCTTTTTGAcgtaa
Protein Sequence: MYACSIHFDGLYLTQSKGLLKLGLPILFLPTDKSKDEISAQPKISNIKPTTPALAVSDPLSTNRCEIDEDPSNSSQSAQLVPINSPTLQTGGKISQTESPKRKESSSSAGSPTNLTKISEGNVENTISAEKDAIETDNNDKVLNPRICEDEASLESSIFGNQNYLPHSSDYRPQSPPDPSTLTDNSDDEFESYFIFTDKNIQPRNYKLNENGRYECLLCDKNFDSQLLIVKHCETHEEKSRLCHICGKLVEQLAIHIISCKNNMNYRKLSLQDRMCSYCGVLSRDIFRHREHLNSHTGEKPYQCVCGSRFTASSNFRAHRVKFGCPHPPKKSRERVTSKEIEHLKTPVKARKSSRDPNRYVCKECNLQCGTYDKYRFHIRTHVTERNFICQLCNNSYRNKSSLDNHIRRKHLRKYKCTTCDRTFDTEGRLHNHLLEHQTDNSFRCDLCNNEERFPTLLGLRLHQREIHRGIKKERKSNKFVCVLCEISFEGSRKTLLHHLRKNELHIKTETEWKLKYNIKDYKCSFCSKLYDTFLDYSLHMGLTHTKHILTKMENCFEDFQSLKNVETFNNDIIMKDSNKSNNDKCILSENVTTETRSDHLKADKDDHLLFLPIEESIFEISASPNISNIKPVNPEPTVSDPLSNYCGNEVELDPLLDYCTCECEFDESPNLPENSGSTEEPATIDPYSNYCTCGCEIDENTLNSSESAQVVSINSSILVTTSPTPQTVTTNKQTGSPKRKGTSSSAESPTNLTKISEGNVENTISAEKDAIETDSNDKILNPRSCEDEASLESSIFGNQYYLPHSSDYRPQSPPDPSTLTDNLDDEFESYFIFTDKNIRPRNYKLNENGRYECLLCDKIFDSQLFIIKHSETHEEKSSLCYVCGKLVKLQLTAHITICKNNTQSIGHRIPTLQDRICPYCGKVSPSIFHHRDHLNFHTGEKPYQCVCGSRFAGSANFRTHRVKFGCPHPPKKIRESRRRTNVQQPKTPKRTRQSRLDPNRYVCKECNLQCGTYDNYRFHIKKHVTERNFICQLCNKSYRHKNMLDNHIKKKHLYKYKCTICDRTFDTEGKLRNHLPEHQTDYPFRCDLCENEKRFPTLSGLRIHQRDIHMEIKKEKEKKSFCRGTFLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -