Xate026216.2
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730484.1:36029232-36032321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0034 0.25 12.8 0.9 1 23 106 129 106 129 0.95 2 14 2.2 1.6e+02 3.9 4.2 2 21 139 158 138 159 0.92 3 14 0.0046 0.33 12.3 1.0 1 23 219 242 219 242 0.95 4 14 0.0028 0.21 13.0 1.2 1 23 332 355 332 355 0.96 5 14 0.13 9.5 7.7 3.3 3 23 468 489 466 489 0.93 6 14 0.0006 0.043 15.1 0.3 1 23 671 694 671 694 0.96 7 14 3.8 2.7e+02 3.2 1.4 3 23 706 727 706 727 0.94 8 14 0.051 3.7 9.0 0.7 1 23 776 799 776 799 0.96 9 14 0.11 8 8.0 0.3 3 23 866 887 864 887 0.96 10 14 0.37 27 6.3 3.2 3 23 893 912 891 912 0.96 11 14 0.0014 0.1 13.9 0.9 1 23 920 942 920 942 0.98 12 14 0.028 2 9.9 0.2 1 23 948 970 948 970 0.94 13 14 0.00079 0.057 14.7 5.0 1 21 976 996 976 999 0.94 14 14 0.0012 0.088 14.2 4.1 1 23 1005 1027 1005 1027 0.98
Sequence Information
- Coding Sequence
- ATGAACACGCCAGTAATTGACGAAATACAACAAAATGGACCAGCAATGGAAGAAGTATCATTTCTACGGGATGGAAATATATCTGACAAAAATGGTGACGATAAAATTACAGAAGttccaaatgaaattgtgaactCTTTAATGGTGGAAGAGAATAGATCTAAAACGGTTGATAAAACAAACGTacttaataataatgatgaagaAAGTTTAGAAACACTTGATGAAATTCTAGATTCTTCATCATACATCAAGGAGAATATCATCTCCATTGGTGATGAACaactattaaatgaaaataaagattCTATGTTATATAATTGTTTAAAATGTAATTGGAAATTTCCAACACGCAAAGACTATGCTAATCATTATGCAAAAGTCCATCGAATCCGTAGAAAATTGAAACCAATCAGTTGTCGtcaatgttttattaaatttaattcacaAAGGCATTATTCTGCTCATCGTTGTAGAGTTCCTGGCGAAGATAATTCTAGTtttgagaaaatattttctgatGATAACTTTTCTGATATAATAGATGAAGAAACTATGGACGAACGATCAACTTTGAATTCGTCATCATTTGTCAAGAATGTATCAcaaaatgatgaaaatattgATCATCAAATATCAAATGAGAATAtgttatttaattgtttaaaatgtAATTGGAAATTTCCAACACGTAAAGACTATGCTAATCATTATGCAAAAATCCATCGAATCCGTAAGAAATCGAAACCGATAAATTGTCGtcaatgttttattaaatttaattcacgACAGATATATGATTCTCATGATTGTAACATCACCACAGTAACAACTGATGAAATTGATTATAATCAAGATAATATTAAAGATCAAACAAAAGATGTATCATTTCCGAATGAGAATTTGTCTTCCACGTTAATGGATAAGAATCAATCcgatgaaaatgaagaaactaaCAAATTATCAATAAATAAAAGCAGAAATTCAAGATTATATAATTgtgaaaaatgtaatttacCATTTTCCTCAACCAAAGAATATAATAATCATTATGAAAAGGTACATCGTAAACGTAAATGGTTCAAACCGCGCGATTGTAGTAAATCTTCTACGAAATCATCGAGCTCACAATTGGAATCTTCTGAACATTATGATAGATTTCATAATGGAAATTATTATCCAGATCAACAAACCGACAATGAAATTGACCAAAACGAAAGTGAAGAACAAACTATGGATATATCATATCCGGATAAGAATTTAACTGATGAATATGAAGAAATTATCATCGAAATGACTACTGATGAACGTCTAAATTCTTCATCATCTTTCGTTGAGAATACTATACCGCAAGAAAACCTGAAAATCTCTCAAATTCCACTTGAAACTAAAATGTTTGGTTGTCgtaaatgtaatttaaaattcacAACACGACGAGATTATCGAATTCATCATGGAAAAATACATCGGAAACGTAATAAGATCTTCGATTGTCATCAATGTTGTATGAAATTCAATTCATCGAGTAAATATTCTGATCACTTTTATATATATCATAGTGGAAAGGAATATGATGATGTTAAATATGAAATGGAAGATGCTAGATGTAATGAATCAATTATCGAACAGAACTTATTTGATAAAGATGgacaaatttcaaattcttcTTCATTAATGAAGGATAAAACTGATGACGACGATAAAGTTTCCAATGAAATTATAGATTCTAAGAATTACGGTTGTCGTAAatgtaatataaattttcaatcacGTGAAATCTATAGTTCTCATTATGAAAAAGTACATCGTACACGTAACAAATTGAAATCGATCGATAATAAAGTTAATAATGAAGAAATGAAGGATCCTATTACTAAAGATGAACTATTTTTGGATAGTAAAATAGCTGGAGATGATGAACTTCTAGAAATCTTAAATGGAATTACAAATTCTTCTATATTTGAGAATAAAACAATTACAAATACagctgagaaaaaaaaacaaagaatatATAGTTGCCCTGTATGTAATTTGATATTTCCATCGCGTGGAAATTATGATAAACATCGTAAACAAGTACATTCTGAACGTTTAGAGTTGCCTAGATCGATTGGTTGTCGTAGATGTTTCATAAAATTCAATACACGACAAGAATATAATTTACATAATAATATAGTTCATCGTAGAATCTATAGAAACGATAAAGAAACtataaataaatcatttattATGAATAATCAAATTGTAGAAACTATGGGAATCCCTGATGACCTTCTAAATTCTTCATCTTTCGTGGAGAATATATCTCAAGAAGATTCAAAATTATATGATTGTCCTaaatgtgatttaaaatttccattacACAATGAATATTTACTTCATTATGAAACAATTCATTGTAATGAGATTGTATTTCTTAACGATCCGAATTTTAAACGATTACATAAGCAACCTGATAGCCAGGAAGGAACTAATAAGTCTGTACTAGAGAAAAATGTATCAGAAAATAATGATGAacttataaaaatatcaaattatgaTGGAAATTCTCCTTcctcatcatcattatcatcattatcaaaAAAGTGGTACGGTTGTGGtaaatgttatataaaatttccaACACGTGAAGAATACTTGgaacattataaaatatttcataaagaaTTATGTCTATGTCCGAAATGTGGTAAACTTGTACAACGTATTCATTTGAATAAACATCTAAATGGACATATTCcaaagaaatcagaaaaatttaattgtaatGAGTGTCGTAAAACAATAGTGGGTAGAGCTTCTTTTAAAAGGCATCTACGTATTCATAGCGGAGAACGTCCCTATGAATGTGAATATTGTAGAAAAAGATTCAATGAGGCTGGTGTAAGAAATCTACATATTTTAATTCATACGAAAGAAATGAAACATGAATGTCATCTATGTGGTATAAAATATCCACGAAAATCTAGTCTAACTCGACATATTCAGTGTTTTCATATTGGTGAAAGACGATTTGAATGttctttttgtttaaaaagaTTCTTTACAAATCGAGATTTAAAACGACATAAGAAAATCCATATGcaataa
- Protein Sequence
- MNTPVIDEIQQNGPAMEEVSFLRDGNISDKNGDDKITEVPNEIVNSLMVEENRSKTVDKTNVLNNNDEESLETLDEILDSSSYIKENIISIGDEQLLNENKDSMLYNCLKCNWKFPTRKDYANHYAKVHRIRRKLKPISCRQCFIKFNSQRHYSAHRCRVPGEDNSSFEKIFSDDNFSDIIDEETMDERSTLNSSSFVKNVSQNDENIDHQISNENMLFNCLKCNWKFPTRKDYANHYAKIHRIRKKSKPINCRQCFIKFNSRQIYDSHDCNITTVTTDEIDYNQDNIKDQTKDVSFPNENLSSTLMDKNQSDENEETNKLSINKSRNSRLYNCEKCNLPFSSTKEYNNHYEKVHRKRKWFKPRDCSKSSTKSSSSQLESSEHYDRFHNGNYYPDQQTDNEIDQNESEEQTMDISYPDKNLTDEYEEIIIEMTTDERLNSSSSFVENTIPQENLKISQIPLETKMFGCRKCNLKFTTRRDYRIHHGKIHRKRNKIFDCHQCCMKFNSSSKYSDHFYIYHSGKEYDDVKYEMEDARCNESIIEQNLFDKDGQISNSSSLMKDKTDDDDKVSNEIIDSKNYGCRKCNINFQSREIYSSHYEKVHRTRNKLKSIDNKVNNEEMKDPITKDELFLDSKIAGDDELLEILNGITNSSIFENKTITNTAEKKKQRIYSCPVCNLIFPSRGNYDKHRKQVHSERLELPRSIGCRRCFIKFNTRQEYNLHNNIVHRRIYRNDKETINKSFIMNNQIVETMGIPDDLLNSSSFVENISQEDSKLYDCPKCDLKFPLHNEYLLHYETIHCNEIVFLNDPNFKRLHKQPDSQEGTNKSVLEKNVSENNDELIKISNYDGNSPSSSSLSSLSKKWYGCGKCYIKFPTREEYLEHYKIFHKELCLCPKCGKLVQRIHLNKHLNGHIPKKSEKFNCNECRKTIVGRASFKRHLRIHSGERPYECEYCRKRFNEAGVRNLHILIHTKEMKHECHLCGIKYPRKSSLTRHIQCFHIGERRFECSFCLKRFFTNRDLKRHKKIHMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -