Xate001555.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- RREB1
- Assembly
- GCA_963422695.1
- Location
- OY730478.1:15657385-15662629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.009 0.66 11.4 0.6 1 21 166 186 166 188 0.96 2 14 0.00031 0.023 16.0 0.2 1 23 198 220 198 220 0.98 3 14 3.6e-05 0.0026 19.0 7.5 1 23 226 248 226 248 0.98 4 14 1.3 93 4.6 3.5 2 20 432 450 432 451 0.95 5 14 1.7 1.2e+02 4.2 0.4 1 21 495 515 495 516 0.82 6 14 0.014 1 10.8 0.1 1 23 660 682 660 682 0.97 7 14 0.0061 0.44 11.9 1.9 1 23 691 713 691 713 0.98 8 14 0.0013 0.093 14.1 2.0 1 23 719 742 719 742 0.97 9 14 0.00088 0.064 14.6 3.0 1 23 1074 1097 1074 1097 0.97 10 14 0.00013 0.0097 17.2 0.3 2 23 1380 1401 1379 1401 0.97 11 14 0.22 16 7.0 6.3 1 23 1407 1430 1407 1430 0.97 12 14 1.6 1.2e+02 4.3 3.9 1 23 1495 1518 1495 1518 0.91 13 14 0.13 9.4 7.8 1.1 3 23 1565 1585 1564 1585 0.91 14 14 0.0021 0.15 13.4 4.8 1 23 1591 1613 1591 1613 0.99
Sequence Information
- Coding Sequence
- ATGGAACATAAAATTGAACGTCGTTCATCATCGACATCAGAATCATCTGTTGAACCAATGGATCTTGGTAGGACaccaaaaaaattgaatataaataatgaaTCGATTATAAATAGTAATGATTCAGAAAATTATGAAACTGAAAATGAAGAATATTTATCATcgacaaataaaaataatttgatacGACGTGATAATCTAAGACGTATTGATACCAATGAAAATACTGTCGAAGATGTTATCACAACAAGTCCATTATCATTACGTAAAAAATTTCGTAttagttcaaataaaataaataataataataatctacataataataataataataataatattataaataataaatcaaataatGATATAACACAACAATCGATCGGTGGTGGTGGTGATCAAACAAATAATGAATCCGGATTCGTTGATACAAGCAGCCATCAATTAAATTCTAGTCCAGAATCTGGTATCAGTGAACGTGGTGATGATGTTAAATATGTTTGTCCAATATGTGAAGTTGTATCCGCAACACCGCATGAATTTACAAATCATATACGTTGTCATAATTATTCATCTGGTGATACAGAAAATTTTACATGTCGAATATGTAAAAAGGTATTATCATCAGCATCATCTCTGGATCGTCATGTTCTTGTACATACTGGTGAACGTCCATTCAATTGTAAATATTGTCATTTAACATTCACAACAAATGGTAATATGCATCGGCATATGCGAACACATAAACAACATCAGCAACAACGTAAATCAAGTGGAATTAGCGGAACTGGTGTAAGCGGTATAATTGATGGTAGTAATATTGGTAATAATGGTGGTAATCATAGTGGAGCTGATAGCACTGGCAGTACTGGAGGTGGAGATGGTGAAAGTTATGAAAGTGACGGTTGCTCAACAGATTCAAGTGCCAGTAgctcaaataataataataacaataataatagtcacaataataataataatattattaataataataataataataatattaacaataataataataataataataatacaaacaataataataataattataaacgtAAAAGTACTGACGACGATGATAATAGAATAATAAAACGACGAATGaaaacaattaataataataacaacataaTTCCTGAAAATGATATCGATTGTAATTTAAATCATATAAATTCAACATCAACATCACAGAAATTTTGTTGTCCGGTATGTAGTcgtaatgattttattaatatgcTAACACTCGGTACACATATGGATCGTGAACATCCTAGTATATCAGCTAAATGTCGTCAGTGCGAGATCATTTTTAAAAGTCACAAAGCCTTGAATTCCCATCGTTGTTGTAATAAATTGAATATAACCCAAGGATTTAAAGATATAACATTTGTGGATTTTTCTAGTGAGAAATTTCCATTAATTGCGAAATCCTTATGTGAACAAACAATTCGTACACCGATaacaaatcaaaaatttgaatGTCCAAAATGTTATCGTGCATTTCCATGTTCAAGTGCTGTTGATATACATATCAAAAATTGTGGTGAAATATCATCAATTTCACCGCAAGACTTTTCATTACATAAACGTGCACGTAGCGAAAGTTCCGATGAGGATAATCGACGTGATGAGTTTTTTGCTCATTtagatttacaaaataaatcagCAATGAGTTTAACAAGTACTCTCTCATCACCACGTACATCTGAAAAATCTGaatcaaaaattgatttagaaaaaataccaacaaatgATTATCATAAtgataatcatcatcatcatggtGAATCAAAAGATTTAGCTGATATTCAATCAATATTAAATGTAACATCATCCTCATCGAATAGTTTTCTACGGAATTTCGAAAATTCAGTAAATGCACCCAACGATTATATTTACGGAAAAGATGAAGAAGAAGCTCAAGATGCATTTACATCGGAATTTCGTAAAATGAAATTACGTGGTGAATTTCCATGTAAATTATGTACAGCTGTATTTCCAAATTTACGTGCCCTAAAAGGACACAATCGTATACATTTAAGTGCTGCTGGTGCTGGTCCATATCATTGTAATATGTGCCCATATTTGATTCATGATAAAGCTGCACTCATAAGACATATGCGTACGCATAACGGTGACAGACCATACGAATGTGCCGTTTGTAATTATGCATTCACAACGAAAGCAAATTGTGAAAGACATTTAAGAAATCGACATGCCAAAACAACTCGTGATGAAGTGAAACGTGCCATTATTTATCATCCATCAGAAGATTCCAGTTGTGAAGATCCAAATAAAAAGTTACATTTATTTTCATCGCCAGAATTTGATCAAGACGATGAACATAGTGCACCAAAAGATCGTTCAACACCGGTATCacatttaaaagaaatcttACAATCCGATAAGCCAGTTAAAATTCAAGTAAAAagtttagaaaaattaatagatAAATCGGTATCATCGATTAATTCATTTAGTGAGAAAGATTTTGATTCTGAAAAAGAATTCGATTCAGATCCACATTCTGAAACAAATCGTCCAATTGATTTAAGTATGGATGTATTAGATTTAAGTAAGAAAACCACAACAATATCTAATTCTCCATTAGTCGAAGAAAAATCGGATTTTGATAAACCaaatgaacaacaaaaaatcgatATATCAATGATTgaaaaaaatcaacaattatTTCTTGCTCAACAACAATTCCTTACCGAAACTCTACCAAAAATGGATCCTGctcattattttcaattatctCAATTCTATCGTAATTTAGTATTTCCACCAATTAATCCATTTTTCCTTCCAAATTCATTTCTACAAAATAATCTGAACGATTTGAGTAAATTCCCTCCAAATATGTTAATGAATCCAATGTTTGGTGGACCAAATGATCATCAAATATCACCACAAATGTTATCAACAATTCCAAGTGGAAATCCAGCTCAAACACAATCAACTTCAAcgaaatcaattgaaaattcaccacaaaaacaaatatcaaattCAACTCAATTGCTACAGAAAACTTTAACATCATCAACACCAAATCAACATAATATACAACGGCATATTTCAAATCCAGTAAATTCTCAGCCACAACTTGCTCCATCCTCTGCAAATACTGGTCCTGTAAAAatggttattaaaaatggagttCTAATGCCAAAACAAAAGCAACGTCGTTATCGTACTGAAAGACCATTTACTTGTGAACATTGTTCAGCAAGATTTACATTACGTTCGAATATGGAACGACATATCAAACAGCAGCATCCTCAATATTGGGCACAACGTCAAAGAAGTGGACATCATGTAATGCGTCGTGGACATTCCGCAAATAATTCGATGCCACAAGTGACATCTACAACgataccatcatcatcatccacaCCGGCCATGACAACAAATCATTTCAATGCAATCTCTGATCAAGTGAAATATGCAATTTTGGCACAACAATTAAAAGCTCGAAAGGACACTGATAACATTTCACCAAATAATAACCAATTCAATGGAACAAATCCTAATAATATTGTCACTGGTAACTTAGAAGATGATGAACCAAAATTAGTTATCGATGAAGAGGAAGACGACGAAGATAACGATGAAGATAACTATGATGAAGATATTAAGCCAGAAGATCTTACAAAAACTAGTGAAACGAAACCGGCAATTTCAATGGCGAAAAAAGTGGCTGAAACAATTTTAGAACAAGCAATCAAAGCAAGCAGTTCAATACCatcaaaacaacaaaattcatCCAATGAAAATCATGAAACTAAAGATTATGGTCTTAAGATCGCCAACACAATGATAGCACGTGCTGAATCGGttggtaaatatttaaaagaagttGCAAGTTCATCGTTCAAAGAAGAATCGACCGATTTAGTGCCGGTCGCGAAACTAGTTGATAATGCTACAAATTCATTATCATTCAATAGTTATTTTCGTCCGAGTGATATGATCAGTCACATGGAACAAAGTGATGAAGAGGGTCTAGTTGCATCTGGTAGTGCATCAGAAAGTAACAATTCCGGAACTGAAGATCCACAAAATCCACCAAATGGACcagaacaaaaaaagaaatctgcTTATAGTTTGGCACCAAATCGTGTATCATGTCCATATTGTCAACGTATGTTCCCATGGTCAAGTTCATTACGTCGCCATATTTTAACGCATACCGGacaaaaaccattcaaatgttcACATTGTCCATTATTATTTACAACGAAAAGTAATTGTGATCGTCATTTATTACGAAAACACGGTAATGTTGAATCTGCCGTTTCATTATATGTTCCAATCGATGATATACCAGATCCAGTACCAACACCAAAAATTCCCGAAGAACAACAACCCGATATTCCACCAACAACAATCAAAACAAATCCAATTCCAATAAATCTAAATATACCAAATATTAAAACCGAACAAATAGTATCTGCTTCGGATCTTCCATTTAAATGTCATCTATGTGATAATTCATTTTCTGAACGTATTCAATGTTTAGATCATATTAAATTGAATCATTCACAAGACTTCGCATTATTATTAGCAAAAGGTGCTATAGATGCTGATGCGGATTACAATCAAATGCATTCAGCGGAAGATGATGAACGTAATGATGGACGTGGCAAATATCCAGATTATGCTAATCGTAAAGTGATTTGTGCATTTTGTATGAGACGTTTTTGGTCTACCGAAGATTTACGTCGTCATATGCGTACACATTCTGGTGAAAGACCATTTCAATGTGAAATATGTTTACGGAAATTCACACTTAAACATAGTATGCTGCGTCATATGAAGAAACATGATGGTAATCGTAATACGAATCAATCGAATATCAATAATAGCGGTTCTGATATATCCGATGATGAACAAACATCAAATTTGATATTGGGTCATACATTACGAAAtcataaaattcaagaaattctaAATAAAGCCGAAACATGGAGAACTAATAATTTAATACGAagtgaacaaaaagaaaatatcgcTTTACAACCATTTATCAAATCGGAAAAAGATGTTGGCGAAGAGAATTccgatttaattggaaatcttTTGGGTATCAGTGATCAAGGGATTCTAAATAAACTTCTATCATCAGCTGATGAGGCTGCAAAACTACTCGGTGTTgagaaataa
- Protein Sequence
- MEHKIERRSSSTSESSVEPMDLGRTPKKLNINNESIINSNDSENYETENEEYLSSTNKNNLIRRDNLRRIDTNENTVEDVITTSPLSLRKKFRISSNKINNNNNLHNNNNNNNIINNKSNNDITQQSIGGGGDQTNNESGFVDTSSHQLNSSPESGISERGDDVKYVCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICKKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQQRKSSGISGTGVSGIIDGSNIGNNGGNHSGADSTGSTGGGDGESYESDGCSTDSSASSSNNNNNNNNSHNNNNNIINNNNNNNINNNNNNNNNTNNNNNNYKRKSTDDDDNRIIKRRMKTINNNNNIIPENDIDCNLNHINSTSTSQKFCCPVCSRNDFINMLTLGTHMDREHPSISAKCRQCEIIFKSHKALNSHRCCNKLNITQGFKDITFVDFSSEKFPLIAKSLCEQTIRTPITNQKFECPKCYRAFPCSSAVDIHIKNCGEISSISPQDFSLHKRARSESSDEDNRRDEFFAHLDLQNKSAMSLTSTLSSPRTSEKSESKIDLEKIPTNDYHNDNHHHHGESKDLADIQSILNVTSSSSNSFLRNFENSVNAPNDYIYGKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGAGPYHCNMCPYLIHDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSCEDPNKKLHLFSSPEFDQDDEHSAPKDRSTPVSHLKEILQSDKPVKIQVKSLEKLIDKSVSSINSFSEKDFDSEKEFDSDPHSETNRPIDLSMDVLDLSKKTTTISNSPLVEEKSDFDKPNEQQKIDISMIEKNQQLFLAQQQFLTETLPKMDPAHYFQLSQFYRNLVFPPINPFFLPNSFLQNNLNDLSKFPPNMLMNPMFGGPNDHQISPQMLSTIPSGNPAQTQSTSTKSIENSPQKQISNSTQLLQKTLTSSTPNQHNIQRHISNPVNSQPQLAPSSANTGPVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHHVMRRGHSANNSMPQVTSTTIPSSSSTPAMTTNHFNAISDQVKYAILAQQLKARKDTDNISPNNNQFNGTNPNNIVTGNLEDDEPKLVIDEEEDDEDNDEDNYDEDIKPEDLTKTSETKPAISMAKKVAETILEQAIKASSSIPSKQQNSSNENHETKDYGLKIANTMIARAESVGKYLKEVASSSFKEESTDLVPVAKLVDNATNSLSFNSYFRPSDMISHMEQSDEEGLVASGSASESNNSGTEDPQNPPNGPEQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIDDIPDPVPTPKIPEEQQPDIPPTTIKTNPIPINLNIPNIKTEQIVSASDLPFKCHLCDNSFSERIQCLDHIKLNHSQDFALLLAKGAIDADADYNQMHSAEDDERNDGRGKYPDYANRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHDGNRNTNQSNINNSGSDISDDEQTSNLILGHTLRNHKIQEILNKAETWRTNNLIRSEQKENIALQPFIKSEKDVGEENSDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -