Xate005433.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730479.1:3510454-3517193[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.27 20 6.7 1.1 1 23 1199 1221 1199 1221 0.96 2 12 0.00025 0.018 16.3 2.1 2 23 1224 1245 1224 1245 0.97 3 12 0.0012 0.084 14.2 0.1 1 23 1251 1273 1251 1273 0.97 4 12 0.00025 0.018 16.3 5.4 2 23 1280 1302 1279 1302 0.95 5 12 7 5.1e+02 2.3 0.1 5 23 1315 1333 1313 1333 0.96 6 12 0.53 38 5.9 6.5 3 23 1340 1361 1338 1361 0.95 7 12 0.022 1.6 10.2 0.1 2 23 1372 1392 1371 1392 0.96 8 12 3.5e-05 0.0025 19.0 1.1 1 19 1398 1416 1398 1420 0.95 9 12 0.0043 0.31 12.4 0.5 1 23 1428 1450 1428 1450 0.98 10 12 0.00059 0.042 15.1 9.5 1 23 1456 1478 1456 1479 0.96 11 12 0.0019 0.14 13.5 5.4 1 23 1484 1506 1484 1506 0.98 12 12 0.013 0.95 10.9 5.4 1 23 1512 1534 1512 1535 0.94
Sequence Information
- Coding Sequence
- ATGGGTGAACAAGTAGCATGTCCGGTTTGTACCCTATTTTTACGTCCAGGCATTAAATTGGCTGATCATTTAGAAACACATCCAAAAGATCAAGTTATAAAAGCTTTAGTTTTATTAGCAACGGCGGCATCGTCTTCCACACGTGAAATTGGTATTACAAATCATCAAAACAATTATGATGAATCTTTAAATTTGTTAGCACCAGTTCGATCGCAACCGCCACCTTTATCACCATCACAATTCTTTGGTCGGCCAATTTTAGATGGTGATACTGGAACTGTATTGGCAACAACAAAAGGTTTTCCACCTACCACCAATTCTAGACAAAATCTTATGATAGTTAATCGACGGACTATGTTTTATTCGAGTAGTGAGAGCCGAGAACAGAGTTTATTAACTTCGGAAACTTTACCCATTGAAGGATCATCTTCTGTTCAGatATTCAATGATGGATTACATCGTCATTCGAATAAATCTCTTCCTCCACCGCCGGCCTATAGAACAGCAATAAATCAAATTAGATCTCAACAAAACCAAAGTTCTCCTCCATATATTCAACATACAAATGAATCGAATCTACTTCATTACAATCAAAATACAATTGCAACAAAAAATCATCAACGTAATAATATGTTTTATCAAAATCCTTTGGATTATACAATTGGAAAATCAATACCATCACGGCCGTCACCATCACCATCAGTTTTACGTTATGCCGAAAGTCCAGTTACAGCACAATATGAAGAACGTGATAATGGTGATTTTTTAGTACAAGAATCTCCACGTCATATTGTTGAATGTGTTGAAAAAGATAATGGTGATTTTTCAGTTATTGAAAAAGTCGTAAAATCATCACCATGTATTCTTCATATAAATGATGAAAAGAAAATCCATAATAATAAATGTCACAAAactaacaacaacaacaacaacagcagcagcagcagcagcagcatcATTGATCAGAAGAAATCATTAGAAACTACATTAGAATCTTGTCGTAttgataatgatgataatgatgataatgataatgataatgataatgaacAAGAAATTGatttaacaaaagaaaacaattcaaagaaATTCATTGATGGTATAAAAGTTTTAAGTAATGTTAAATTAGATCGAAATGAATCATTAGgtttaatggaaaatattatGGCTGCAAATACAACAAATTCggataataatgaaataatttggACAGAAATTGTTGATCAAtctaatataaatgaaattaatattgaaaaaaaacctAATATAATTATGGAGACTATAAAAAATCATCATGAAAATAAATCATCAtcaattgaagaagaaaaacaaaatgatatGAAATTTATACCATCACCGTCAACATCTAGAAAATCATCATCTAGTTCATCGGCAACAAGTGTTATACGTATGATTTGTGGTAGTaaagagaaaaattataaaactatCCCTTCGACTAGTCAAAAGAATGGTGATATAAAAAATCGTACAAATCGAGAACAACAAACTGCATCACATGTTAAGAAAACATTTCGACAAGTtccgaaaaaattaataataaaaaaactaagaaaatcgattacacaaaataataataatattaataataataatacttctacaataattacaacaataaaAACTGATGAAACAATAAATAATGATTTATCGATTCCCGTGAAAGGTACTGAAGAAATTGAAGacttaaatattaaatcaaaaattgaaaaaatagtTTCAGCAGCATTagcaacatcatcatcatcatcatcatcaatagaTAATATTAAAATGGATATAAATAATGATATTGATGTCATTCCATCAAAAGATATAATTGATAATCAAATgactgaaaataattttatggaaaataacaacaacgatattatatttaataatattaataatgataatgataataatattgaaacgaaattattaaaaattaaaattgaaaataccaCATTACTACCAATGATTGTTCATGAACCATCTTTAAGTAGTGATGAACCAgatgaattacaaaaaaatgataatcaaaataaattgaatgaaCCAAAAGAACAATTAAGAAATGTTATCGATGATAATTATACAATGGATAATTCTTCTATACcaataaatatttcattaattgATGAACAATCTGGTTTAGATAAATCAACAACATTTACatcaatatcatcatcatcatcatcatcatcagaatCAAATATTGAtatattatcaaataaaaatgaaaatattattattaatgatgATATTAATGGATTATCAACAACTGTAACATCATTTAATTCATTTCCATCAACATCATCGAAATTTTCTAAACCATCAACAAGTTCCTCAGCATTACAGACTGATtatgaacaacaacaacagcagcaacagcaacaatcGTCGAATCCAAATAATTATAATGATTATCCATTTAGTTTTCTATATGATAAAAATCGTTTATCACCAACATTTTATGGTAATAATgttcaaaatgaaaatcttcttaacaataataatattgatgatTGTACAAATGAACCGCAAACACCATGGAATCGTTTAAATTCTCAAACACCAccaatttttcaacaatatcaacaaaatttaatacatcAAAATTCTAATAATCATTTTCATGATATCGATTCGGAACGTAATAGTTATATTGATTTAGATTCATGTaagaaaattaatacaaatactgatggaaatttattacaattttcgGAAACATTAAATATACAAACGGATGAGAAAATGCCAGCCAAAGGTGAAATATCCGAACAGGAAAGTAATGGTGATATCGAAAATTCATGGAGTCATCCatTATATCCCGAACCGGCATATCGTATATCAGCTTACTATGAAAATTATGTAACCAGTGAAAGTTGGAGCTATAGCAATGATGAATTATTTTCACCACAAGATTTAAGTTCAATGCCGaaattaaaattaacTCCGACATTATCAACTTTAGTTCCCGAAATTGAatgtaaaaaagaaattccaaCCTCATCAACATGTGTTAAAgggaaattgaaattgaaaacaacgttaaataaaaggaaaacttttgaATGTGCACATTGTacgaatatatttaatttaatgagAGATCGTAATGCTCATTTAATAGAAGAACATGGTTATAAACGTGTCAATCGACGTTTAACACGAGATGCTCTACCAGCAACTGTAACAACTAGTAGTGTTGTTGATAATGCAATTTCTTGTACGATTATAAATGAACCAAAtcaaatattagaaaataatccACACATCGATAATAATCAATCATCAATTGATAATCAAACAAATGGTACTACACCACTcttattatcatcatcaactGATGATAATCTATTATCAGTCGAACCAATGAATACAACAATTACAACAGACGATATAAAATTACCAACTGATGTAAAAGTTAAAATCGATACAACTGAAACTGATCCGACAATATATTCACGGACAAAATATGATACGATACGTGCCGGCGTTTATCGTATGTTGATGAGTTTCAATTTGAGCGTTTTACAACAAACGAAAAATATCGAAATGGATAATACAATATTCGAAACGAAATCATTTTATTGTTATACATGTAAACGTGATTTTATTAGTGCCAAATTATTTGATGAACATTTAAGTGAACATCCAGCTGAATGTTTTACATGCGGACGAACATTTACACGTTGGACATATTTCTCATTACATTTGAAACGTCATTTAGGTTGGAAAGATTTTGCTTGTACGGTTTGTGAAAAAAAATTCGTAATACGCGGTGCAATGATTGAACATATGAGAATGCATACTGGTTCAAATCCTCTAAGTTGTAAATTATGCGATAAGAAATTTCGTCGTTATTCAAATTTAGCACAACATAAAAAGCGTTGTCATAATACACGTCTTATTAAGAAAAAAGATTATGTTTGTTATTGTGGTGAAGTATTACCATCGAAAGCAAGATTTCTATGGCATAAAGAAACTCATGATACACGACCAAAATGTTGTCCGCATTGTCGTGATcgtttcgtacatataaataGTTTAAAACGTCATATTCGTTTAATGCATTCCGATAAGTTTTCATATGCTCAACCAGTTGAATGTCCGAAATGTAAACAAATCTATGCTAAAGCAAGTTTAAAAGCACACATGTCAACACATTCAATGGAAACCCAACATGAATGTTCTATTTGTAATAAATCATTTAGTACAAAatggaatttgaaaattcaCAGTTGGGTACATGCTAATCGTACAGCAAAACCTTTTAAATGTGATCAATGTATTAAGGCGTTTGTACGTGAAATcgattataaaaatcatattaattcTCATAAACATATTAAACCGTTTACATGTGAACATTGCGGTTGTAGATTTATacgaaaatataattatatgcgTCATAGACGTGAACATCATGGACAAAAAAAGTTTAGTTGTGATTTATGTGGTAAATTATTTCATAGGCATTATTATTTGATTGAACATCGTCGGACACATACCGGTGAAAGACCATATTTATGTACAATATGTGGGAAAagttcaacaacaaaaacaaatcatAATAAGCATTTAAAAATACATCATTCACGTGATCCATTCACATCAGAGGTGTAG
- Protein Sequence
- MGEQVACPVCTLFLRPGIKLADHLETHPKDQVIKALVLLATAASSSTREIGITNHQNNYDESLNLLAPVRSQPPPLSPSQFFGRPILDGDTGTVLATTKGFPPTTNSRQNLMIVNRRTMFYSSSESREQSLLTSETLPIEGSSSVQIFNDGLHRHSNKSLPPPPAYRTAINQIRSQQNQSSPPYIQHTNESNLLHYNQNTIATKNHQRNNMFYQNPLDYTIGKSIPSRPSPSPSVLRYAESPVTAQYEERDNGDFLVQESPRHIVECVEKDNGDFSVIEKVVKSSPCILHINDEKKIHNNKCHKTNNNNNNSSSSSSSIIDQKKSLETTLESCRIDNDDNDDNDNDNDNEQEIDLTKENNSKKFIDGIKVLSNVKLDRNESLGLMENIMAANTTNSDNNEIIWTEIVDQSNINEINIEKKPNIIMETIKNHHENKSSSIEEEKQNDMKFIPSPSTSRKSSSSSSATSVIRMICGSKEKNYKTIPSTSQKNGDIKNRTNREQQTASHVKKTFRQVPKKLIIKKLRKSITQNNNNINNNNTSTIITTIKTDETINNDLSIPVKGTEEIEDLNIKSKIEKIVSAALATSSSSSSSIDNIKMDINNDIDVIPSKDIIDNQMTENNFMENNNNDIIFNNINNDNDNNIETKLLKIKIENTTLLPMIVHEPSLSSDEPDELQKNDNQNKLNEPKEQLRNVIDDNYTMDNSSIPINISLIDEQSGLDKSTTFTSISSSSSSSSESNIDILSNKNENIIINDDINGLSTTVTSFNSFPSTSSKFSKPSTSSSALQTDYEQQQQQQQQQSSNPNNYNDYPFSFLYDKNRLSPTFYGNNVQNENLLNNNNIDDCTNEPQTPWNRLNSQTPPIFQQYQQNLIHQNSNNHFHDIDSERNSYIDLDSCKKINTNTDGNLLQFSETLNIQTDEKMPAKGEISEQESNGDIENSWSHPLYPEPAYRISAYYENYVTSESWSYSNDELFSPQDLSSMPKLKLTPTLSTLVPEIECKKEIPTSSTCVKGKLKLKTTLNKRKTFECAHCTNIFNLMRDRNAHLIEEHGYKRVNRRLTRDALPATVTTSSVVDNAISCTIINEPNQILENNPHIDNNQSSIDNQTNGTTPLLLSSSTDDNLLSVEPMNTTITTDDIKLPTDVKVKIDTTETDPTIYSRTKYDTIRAGVYRMLMSFNLSVLQQTKNIEMDNTIFETKSFYCYTCKRDFISAKLFDEHLSEHPAECFTCGRTFTRWTYFSLHLKRHLGWKDFACTVCEKKFVIRGAMIEHMRMHTGSNPLSCKLCDKKFRRYSNLAQHKKRCHNTRLIKKKDYVCYCGEVLPSKARFLWHKETHDTRPKCCPHCRDRFVHINSLKRHIRLMHSDKFSYAQPVECPKCKQIYAKASLKAHMSTHSMETQHECSICNKSFSTKWNLKIHSWVHANRTAKPFKCDQCIKAFVREIDYKNHINSHKHIKPFTCEHCGCRFIRKYNYMRHRREHHGQKKFSCDLCGKLFHRHYYLIEHRRTHTGERPYLCTICGKSSTTKTNHNKHLKIHHSRDPFTSEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -