Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730483.1:16097042-16098716[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.1e-05 0.0023 19.1 3.0 2 23 133 155 132 155 0.96

2 7 0.00053 0.038 15.3 3.0 1 23 160 182 160 182 0.98

3 7 2.4e-05 0.0018 19.5 6.1 1 23 188 210 188 210 0.98

4 7 3.3e-06 0.00024 22.2 0.9 2 23 217 238 216 238 0.98

5 7 0.011 0.78 11.2 6.4 3 23 246 266 244 266 0.97

6 7 7.3e-05 0.0053 18.0 0.6 3 23 272 293 270 293 0.96

7 7 0.00048 0.035 15.4 2.5 1 17 299 315 299 316 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.1e-05	0.0023	19.1	3.0	2	23	133	155	132	155	0.96
2	7	0.00053	0.038	15.3	3.0	1	23	160	182	160	182	0.98
3	7	2.4e-05	0.0018	19.5	6.1	1	23	188	210	188	210	0.98
4	7	3.3e-06	0.00024	22.2	0.9	2	23	217	238	216	238	0.98
5	7	0.011	0.78	11.2	6.4	3	23	246	266	244	266	0.97
6	7	7.3e-05	0.0053	18.0	0.6	3	23	272	293	270	293	0.96
7	7	0.00048	0.035	15.4	2.5	1	17	299	315	299	316	0.95

Sequence Information

Coding Sequence: atggAAGTTTATGATCAAAATATGTGTCGAATATGTTTAACCGAGAGAAGTGATGATTTTGAGAGTATTTTTATAAATGATGATTCAAAAGAAGAACCTTCTGATTTGGGAGTTCTTTACcaagatattttacatttattggCAATCGAATCACACAAGAAATTTACCAGTTACGATGGTTACTGCAAAGAAGAATCAGCAGAAGATATATCAGATCCGGAATGTGATACATctGACAACACttctaattatataaaaattgaagaaatgaCTGTACTGGACGAATCTGAATTTGATAATGAAGGATTTGAGGAAGTGCAATATTTAGATGAAGAAATTGATTCCTTAGAAAGTGATCTTAGCACAGGAAAAGAGTCACCAACTACAATAACACTCAAGTGTAAAGATTGTAAAGAAGTTTTTGAAAAGAGAAATCAATTACGACATCATAGAAGAATTATTCATCCTCGTATTGAATATCAATGTAATTTATGCCCAAAACGTTTCTATTCCAAAGAATCTCATTCAGTCCATATGAAGGTGCATAATGGTCTTCCGGCATATCAaTGCGAAGAATGTAATAAGACATTCAatcagaaagcacattattgTTATCACATAATGAATCATAGAAATGAAAGAAATGTTCAGTGTCATTTGTGTGGAAAAGCATTCTTAAATAAATCTGATCTTCGGATCCATTTAAGAGTTCACAATGATGAAAGACGTTATGGATGTGATATTTGTGgAAAACGGTTTCGAGCACATACACATATGACAAATCATCGACATTCGCATTTTGATAAGCTTGACTGTGAATTCTGTTCCCAAAAGTATAGTTCACCAAGTACATTAAAAACTCATATAAAATCTGTACATAATGGCGAATGTCCATATGAATGTgagttttgtaataaaaaatttaaaaggaagCATCATTTAAAGGTAACGAGGAATTGA
Protein Sequence: MEVYDQNMCRICLTERSDDFESIFINDDSKEEPSDLGVLYQDILHLLAIESHKKFTSYDGYCKEESAEDISDPECDTSDNTSNYIKIEEMTVLDESEFDNEGFEEVQYLDEEIDSLESDLSTGKESPTTITLKCKDCKEVFEKRNQLRHHRRIIHPRIEYQCNLCPKRFYSKESHSVHMKVHNGLPAYQCEECNKTFNQKAHYCYHIMNHRNERNVQCHLCGKAFLNKSDLRIHLRVHNDERRYGCDICGKRFRAHTHMTNHRHSHFDKLDCEFCSQKYSSPSTLKTHIKSVHNGECPYECEFCNKKFKRKHHLKVTRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -