Xate004244.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730478.1:48377319-48379543[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.1e-05 0.0044 18.2 1.0 2 23 149 170 148 170 0.97 2 9 0.0001 0.0074 17.5 0.4 1 23 176 199 176 199 0.96 3 9 0.00071 0.051 14.9 0.4 1 23 204 229 204 229 0.96 4 9 0.0008 0.058 14.7 0.0 2 23 245 266 244 266 0.96 5 9 0.0021 0.15 13.4 6.4 1 23 272 294 272 294 0.92 6 9 1.8 1.3e+02 4.1 2.3 1 21 300 320 300 322 0.77 7 9 0.00016 0.012 16.9 0.8 1 23 328 351 328 351 0.97 8 9 0.00078 0.056 14.8 5.4 1 23 357 379 357 379 0.97 9 9 1.2e-05 0.00085 20.5 0.7 1 22 385 406 385 409 0.90
Sequence Information
- Coding Sequence
- ATGTTTTACGCGTGCACATCTATGGAAATTGTTGAAGAAGATTCCTGTTCAAAATTTCTATGTGAAatgtgttataaattaattaagaaattttatgaatttcgtACAATGTGCGCACTTTCATATAATACATTACAAAGCCTATGCATAGTACATGATGAAGACAAAACGAATAATACAATTCTTACAAATGATGGTGAACTATTTGAAGAATATTTATCTGATGATGATAATACAGACGATGTTAAAGAAGAATTAACTTATTTACAAATTGATCAAGATTTCAGTGAAGATTTAGATTATTATTCGGGATTAAATGAAGATGATATAATAGACGAACGAATTGAAGAATCTGATGATAATGCATCAAATTTATCAGAAAGTCAAGAAGATAGTTGCGATAATAATCaggaaacaatttcaaatattgGACGAAAAAAGTTGAAATGTGAATTTTGTCccaaaaagttctttttaaaatctCGCCTTCAAGCACATATAAGAATACATGAAGGACTAAAGCCATATGTTTGTCATGAATGTGATGCTCAATATAATGATAAGAGGTCATTAATTACACATCAGGAAGTCGTGCATATGAATATGCTGTACTATTGTTCAACACCTGGTTGTGATAAAGCCTTTAGAGCCAAGCGAACTTTGGAGGATCACAATAGAAAAGTACActctgatttcaaaaattatcaaGCTAGAACACAAAATACCTCAGTTGTTTGTGAAGAATGTGGAAAAATTCTTGGAAATCGGCAATCATTGAAAGTTCATTTAGCTTCTCATTCGAAAAATTTCGTatttaaatgtgaaaaatgtccgaaaaaatttaacacaaaaacgaaattaaaattgCATTGTTTACGTCATGATGGtgttaagaattttatttgccCTCATTGTGGAATGAGAAAATTAAATCGAAAAGAATTAAATGTTCACATAAATTGTCATACAAAAGAAAAGGTCCATAAATGTCCACAGTGTACGAGTACCCTTATAACGAGAAGTGCTTTAAATCGTCACATTAAAGTAGTACATCAAGGTTTAAAAGATCATCCATGTAGTTATTGTAATAAATCTTTTTCAACTCAGAGGATATTACAGCATCACTCTATGACACATACTGGCGAGAAACCACATGAATGCACATATTGTGGGAAACGTTTTATACAATTAATCGCCTTGCAAAGGCATTTAGAACGAGCTACACATTGtaaacaaaatgaataa
- Protein Sequence
- MFYACTSMEIVEEDSCSKFLCEMCYKLIKKFYEFRTMCALSYNTLQSLCIVHDEDKTNNTILTNDGELFEEYLSDDDNTDDVKEELTYLQIDQDFSEDLDYYSGLNEDDIIDERIEESDDNASNLSESQEDSCDNNQETISNIGRKKLKCEFCPKKFFLKSRLQAHIRIHEGLKPYVCHECDAQYNDKRSLITHQEVVHMNMLYYCSTPGCDKAFRAKRTLEDHNRKVHSDFKNYQARTQNTSVVCEECGKILGNRQSLKVHLASHSKNFVFKCEKCPKKFNTKTKLKLHCLRHDGVKNFICPHCGMRKLNRKELNVHINCHTKEKVHKCPQCTSTLITRSALNRHIKVVHQGLKDHPCSYCNKSFSTQRILQHHSMTHTGEKPHECTYCGKRFIQLIALQRHLERATHCKQNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -