Xate005007.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730478.1:62133546-62135182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.6e-05 0.0041 18.4 1.4 1 23 204 226 204 226 0.96 2 9 0.00097 0.071 14.5 3.4 2 23 233 255 233 255 0.96 3 9 2.4 1.7e+02 3.8 0.0 6 23 264 282 264 282 0.93 4 9 6.5e-05 0.0047 18.1 0.1 1 23 287 309 287 309 0.97 5 9 1.9e-05 0.0014 19.8 2.9 1 23 315 337 315 337 0.96 6 9 1.3e-05 0.00092 20.4 1.9 2 23 344 365 343 365 0.96 7 9 0.013 0.93 10.9 0.9 1 23 371 393 371 393 0.98 8 9 1.2e-05 0.00084 20.5 2.2 1 23 399 421 399 421 0.98 9 9 0.00077 0.056 14.8 1.0 3 23 429 450 427 450 0.97
Sequence Information
- Coding Sequence
- ATGGACTTATGTCGGTGTTGCTTGTCAGAAGGAAATATCGGATTAAATTCTTTCTCAGATGAAAACATTGTCGAAATTATTGCATTTTTGGGAATTGTTTATCAAAATCATATTAGTAACTTCccaaaaaatgtttgtaatgcatgtgatttaaaattaaaagaatttgctaactttaaaaaaaaatgttatgattCTGAAGAGGTTTTACGGGAAAGATTTAAAGATTTTGATCTTATCAAAAAGGAAGACTGTTCTGAAAATATTCAATCAAActtacaagaaaataataaaattgatacCGAACCGAACCACCCAATAGCAAGACGAACAAGaaagaaatctTTAACTCAAAAACTTGGAAAAAATTCCAATGAATCGGAAgtggaaaaagaagaaaatgtccagaatttagaatattttgagCCTGAtattaaattagaagaaaattcaaatgaatCAGATGATGGTGGAAGTAAAGAGGTCAGTTCAAATGAAAAAGAATCCTCTGAAGATAATTCCGATACAAGTGCTGATGCTCCACGGAGATCAAAACGCCAGAAAAGTGTGAAAAATCCACGACCGAATAGGAAAAAAGTAGACTATCCATATCTGTGCCATATTTGTGATAAAGGATTTCGATTTGAACAACGTCTTAATGCTCATTTGAGAGTGCATGAAGGAAAACCTatgGCGGTTTGTGAATTTTGTAGTCGTGAATATCGCCATTGGTCTGGTTTACTACATCACCTTAGAAAAAATCATTCAGCAGAAACGGAATATCGTTGTTGCGGAAGAGCATTTTTAACTGACAGCTTACTTGAGGCGCATCAAGTCTCCCAACACGCTCCAAAAGAATATATTTGCGAACTTTGTGGAAAAATTCTACGTAATAAAGCTGGGCttgaaaaACATCGTATTGTACATACTGATGAAACCCCTTTTAAATGCAATAATTGCGATCGTGCTTTTAAAACTCAGAAAAGCTTACGTGACCATGAATTTCGTCATACTGGAGTTAGAAATTGTATATGCGAAATATGTGAGAAACCATTTGTAACACGTCAAGAATTAAAACATCATATGTTGGTTCATACGAAAATGAAAGCATATAAATGTAATCTTTGTGAAAAGGAATACCTTTATAGAAATCAATTAATTGTACATAAACGTGCCCATagtggtgaaaaaccatttaaatgtaatACTTGCGGTCAATCATTTACAATGACCTCTTCACTAAAAAGCCATAATCGAATTCATACTGGCGAAAGACCTTACGGTTGTGAATTGTGTGGTAGAACTTTTGTGTCACGACAAAGTTTAcgatttcatataaaaactaaACATGCAGAAACAGGGACTGAGCCAACAGGACCGACTAcagttttaaattga
- Protein Sequence
- MDLCRCCLSEGNIGLNSFSDENIVEIIAFLGIVYQNHISNFPKNVCNACDLKLKEFANFKKKCYDSEEVLRERFKDFDLIKKEDCSENIQSNLQENNKIDTEPNHPIARRTRKKSLTQKLGKNSNESEVEKEENVQNLEYFEPDIKLEENSNESDDGGSKEVSSNEKESSEDNSDTSADAPRRSKRQKSVKNPRPNRKKVDYPYLCHICDKGFRFEQRLNAHLRVHEGKPMAVCEFCSREYRHWSGLLHHLRKNHSAETEYRCCGRAFLTDSLLEAHQVSQHAPKEYICELCGKILRNKAGLEKHRIVHTDETPFKCNNCDRAFKTQKSLRDHEFRHTGVRNCICEICEKPFVTRQELKHHMLVHTKMKAYKCNLCEKEYLYRNQLIVHKRAHSGEKPFKCNTCGQSFTMTSSLKSHNRIHTGERPYGCELCGRTFVSRQSLRFHIKTKHAETGTEPTGPTTVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540885;
- 90% Identity
- -
- 80% Identity
- -