Xate024552.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730484.1:2325765-2329375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0088 0.64 11.4 1.4 1 23 68 90 68 90 0.95 2 17 0.28 20 6.7 3.1 1 23 96 119 96 119 0.92 3 17 0.013 0.94 10.9 0.7 2 23 122 144 121 144 0.91 4 17 0.00026 0.019 16.3 0.3 1 20 150 169 150 171 0.92 5 17 0.026 1.9 10.0 0.5 1 23 179 201 179 201 0.97 6 17 0.034 2.5 9.6 0.2 1 23 207 229 207 229 0.98 7 17 7.7e-05 0.0056 17.9 2.9 1 23 235 257 235 257 0.99 8 17 3.6 2.6e+02 3.2 3.5 1 22 263 284 263 284 0.95 9 17 0.041 3 9.3 5.1 1 23 572 595 572 595 0.96 10 17 0.002 0.14 13.5 1.7 2 23 616 637 615 637 0.97 11 17 9.9 7.2e+02 1.8 0.0 6 23 650 668 650 668 0.95 12 17 0.00032 0.024 16.0 0.5 2 19 673 690 672 692 0.94 13 17 0.0024 0.17 13.2 0.5 2 21 715 734 714 735 0.93 14 17 0.00013 0.0094 17.2 2.2 1 23 743 765 743 765 0.98 15 17 0.0043 0.31 12.4 4.6 3 23 773 793 771 793 0.95 16 17 1.7e-05 0.0012 20.0 0.6 1 23 799 821 799 821 0.97 17 17 0.0036 0.26 12.6 1.8 1 22 827 848 827 848 0.96
Sequence Information
- Coding Sequence
- ATGCCAAGGGTCAAAAAACCTACGAAAACTTGCTCTGATGAAGATTCTGAAGAACAAGTTCTATCAGACAACGATAGACGTTGTAGATATTGTGcaAAACTATTACAAAAATCGAATTATATTTCATCACATGAAAAACAATGTTCAAAAGCAATTTCCAGCACCGAGAAAATAGTCACTTCTAAAGATGGGCGAAAAGTATTTCTATGTGAGATTTGTTCAAAAACTTTCCAATATTTATCTGGAATATTACGACATAAAAAGCGACATGAACCACCAGGAGGATATGTATGTATCTATTGTAAACAAAGATTCTGTAAAGAAACAGATTTATTGAAACACAAACAGGATGAGCATAAGATAAAATGCCCAATATGCCATCGTACTTTTAATTCTGATACGGAACGTTCTGAACATATCGATTCAGTACATAAAGAACGTAATTATTATCTTTGTGAGAATTGTGGACAAAAATTTCCAACACCAGGCCATCTGAAAAATCATACAGATTCAAAATGTGGTGCTGAAAAACGTTTTAAATGCTCTGAATGTGGTCTCAACTATATGACTAAAGGAATATTAAAATCTCATAAATTAATTCATAAAGGTGAGAAAAAATATTCATGTAAATTTTGTGGTCAAGGATTTTTGCTACCTTATGCGTTGGGTGTTCATTTAAGACgtcatactggtgaaaaaccatacAAATGTGAAacTTGTTCGAAATCATTTGCACATGAAAAAAGTTTAGTAACCCATTTAACAACTCATACCGGAATAAAACCATACGTATGCGAATGTTGCGGTGCTCGATTTTCTTGTTTCGGAAATTTACAACAGCATCGCCGTAGACGACCATCAACATGTGATTTGCCTGAATATAAAACGaacacgaaaaaaatatcaagaccATCATTTAAAAATTTATTTAACACAAAAACTTCGAAAAGTATAGCTGCAATAATACCGGAACTCGGTAATAATAGCGATAAtatcgaaaagaaaaatgattgcACACTTGAAGAAGGTAATATCCTTCCAGATCAACTTGAGACCAAagtaGATTCTCAAACTGAATTAGATATTGTTGATCACGCTGTAAAAgctaataatattaaaaagaaaaggaagaagCGTAAAAACTTATCTTCACATGaaactaatttcaaaattaaacttcGTAGTAGTGTTTCTCAGCCAAAAATTGAAAAGaTCGAAGATCAATCAGAAATTACTGAAGAAACCGAAAAGAAACCAACAGATCTCGATTtaacattattaaataattgtaattcgCAAAGTTCAAATgatacaaaatataattttgataacACAATATCACAGAACATTGATAAGTGTAACATTAAAGAAGAAATCCAAAACCCTGTGCTTAAAATAGAATGTGAGCCATTCATCTATCAACCATCGGATGTCTTATCAATAAGTTGCGACACCGATATTAAAATTGATCATGTTAAAGATgaaaaaatcatagaaaatgttatttcagtGAGAAACATAAAACACGATGGATCAGATGATGAAATAGCTGAAGGAAATGATTCAGATAATGACAATTACAGTATTAATACTACAAATGAAAATAACACCCAATCTGATGAAGACTATTCCATATTAAGTAAATCTAAAAAACAgagaagtaaaataaaaaaaccaaccGCAattacaagaaaacaaaaaggaaatcaGGAACATAAATGTTCATTATGTCCCAAAATATATTTCCATCGAACGAAACTTTTAActcatttaaaaaatgatcataAAACCAATGAAGAAACTTACAAAAACCAATTAAATGATGATGAATTTGCAGATTCGATGAAATGTAAATATTGTGATAGAAGGTATAAAAAAATTGGTGCCTACAAGAATCATTTAAAAGAACACGGACCCGATgggaaactaatttataaaaGCGTTTGTTGCCGAGAATATTTTGCAACAGAAGATGAAGCTAAAAAACATACAGAAACCGTTCATTACGATCGTATAACATGTTTTGATTGTGATCGATCTTATTCCGATCCGCATGCATTACAAAGGCATAAAtattgtgtacacaaaaatgataaaaataaagacGATACCAAAGATTGTGATagtaaaatggaaaaattacAATGTAAAATGTGTACTCGTAAATTTGCAAATAAGACTGCTCTTTCAGATCATGAACGATCAAATTGTGGAAAGAATCCATTGTACAAATGTGAGGAATGCGGGAAACATTATCATAGTGCAGGATCATTAAAAGGTCATATGTCCCTTCATACCGGTGAGAAACCGCATTTGTGTCAGTTTTGCGGTAAATCATTTCGAACAATACATCAAGTAAGGGATCATCAAATACGTCATAGCGGAGATAAACCGTATAAATGCGAAaTGTGTCCAAAAGCATTTGCTTACCGGTCAAGTCTTATAAATCATTTCTCAAGTCATACTGGGCAACGAAGATTTGAATGTAAAAATTGTGGAATGCGATTTTCATGTATATCAAATCTTCAGGCACATCGAAAAACCAAAAGTAGAACGTGTGGAAATCTTCCGAATGATACGAAGCCCATTGAATATATTGGTGTAGTCGGTGGGACAATTGCTTTGGGTAATAAATACAcccaacaatttaaaaaaagagtAAAGGAAGTTTTATAA
- Protein Sequence
- MPRVKKPTKTCSDEDSEEQVLSDNDRRCRYCAKLLQKSNYISSHEKQCSKAISSTEKIVTSKDGRKVFLCEICSKTFQYLSGILRHKKRHEPPGGYVCIYCKQRFCKETDLLKHKQDEHKIKCPICHRTFNSDTERSEHIDSVHKERNYYLCENCGQKFPTPGHLKNHTDSKCGAEKRFKCSECGLNYMTKGILKSHKLIHKGEKKYSCKFCGQGFLLPYALGVHLRRHTGEKPYKCETCSKSFAHEKSLVTHLTTHTGIKPYVCECCGARFSCFGNLQQHRRRRPSTCDLPEYKTNTKKISRPSFKNLFNTKTSKSIAAIIPELGNNSDNIEKKNDCTLEEGNILPDQLETKVDSQTELDIVDHAVKANNIKKKRKKRKNLSSHETNFKIKLRSSVSQPKIEKIEDQSEITEETEKKPTDLDLTLLNNCNSQSSNDTKYNFDNTISQNIDKCNIKEEIQNPVLKIECEPFIYQPSDVLSISCDTDIKIDHVKDEKIIENVISVRNIKHDGSDDEIAEGNDSDNDNYSINTTNENNTQSDEDYSILSKSKKQRSKIKKPTAITRKQKGNQEHKCSLCPKIYFHRTKLLTHLKNDHKTNEETYKNQLNDDEFADSMKCKYCDRRYKKIGAYKNHLKEHGPDGKLIYKSVCCREYFATEDEAKKHTETVHYDRITCFDCDRSYSDPHALQRHKYCVHKNDKNKDDTKDCDSKMEKLQCKMCTRKFANKTALSDHERSNCGKNPLYKCEECGKHYHSAGSLKGHMSLHTGEKPHLCQFCGKSFRTIHQVRDHQIRHSGDKPYKCEMCPKAFAYRSSLINHFSSHTGQRRFECKNCGMRFSCISNLQAHRKTKSRTCGNLPNDTKPIEYIGVVGGTIALGNKYTQQFKKRVKEVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -