Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730478.1:33100658-33108854[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.8e-05 0.005 18.1 0.7 1 23 162 184 162 184 0.97

2 15 7.9e-05 0.0057 17.9 0.6 1 23 190 212 190 212 0.97

3 15 0.00034 0.025 15.9 0.1 1 23 301 323 301 323 0.98

4 15 0.079 5.7 8.4 2.5 1 23 329 351 329 352 0.96

5 15 5.4e-06 0.00039 21.6 3.3 1 23 379 401 379 401 0.99

6 15 0.54 39 5.8 0.3 1 23 413 435 413 435 0.84

7 15 0.77 56 5.3 0.3 1 23 441 464 441 464 0.85

8 15 0.5 36 5.9 0.6 2 19 472 489 472 490 0.95

9 15 0.00016 0.012 16.9 5.9 1 23 499 521 499 521 0.96

10 15 0.044 3.2 9.2 0.3 3 23 528 548 526 548 0.96

11 15 1.4e-05 0.001 20.2 1.0 1 23 556 578 556 578 0.98

12 15 0.0072 0.52 11.7 0.2 3 23 586 606 584 606 0.97

13 15 8.6e-05 0.0062 17.8 0.5 1 23 612 634 612 635 0.95

14 15 0.0051 0.37 12.2 0.3 1 23 649 671 649 671 0.97

15 15 0.52 38 5.9 0.2 1 20 1101 1120 1101 1123 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.8e-05	0.005	18.1	0.7	1	23	162	184	162	184	0.97
2	15	7.9e-05	0.0057	17.9	0.6	1	23	190	212	190	212	0.97
3	15	0.00034	0.025	15.9	0.1	1	23	301	323	301	323	0.98
4	15	0.079	5.7	8.4	2.5	1	23	329	351	329	352	0.96
5	15	5.4e-06	0.00039	21.6	3.3	1	23	379	401	379	401	0.99
6	15	0.54	39	5.8	0.3	1	23	413	435	413	435	0.84
7	15	0.77	56	5.3	0.3	1	23	441	464	441	464	0.85
8	15	0.5	36	5.9	0.6	2	19	472	489	472	490	0.95
9	15	0.00016	0.012	16.9	5.9	1	23	499	521	499	521	0.96
10	15	0.044	3.2	9.2	0.3	3	23	528	548	526	548	0.96
11	15	1.4e-05	0.001	20.2	1.0	1	23	556	578	556	578	0.98
12	15	0.0072	0.52	11.7	0.2	3	23	586	606	584	606	0.97
13	15	8.6e-05	0.0062	17.8	0.5	1	23	612	634	612	635	0.95
14	15	0.0051	0.37	12.2	0.3	1	23	649	671	649	671	0.97
15	15	0.52	38	5.9	0.2	1	20	1101	1120	1101	1123	0.93

Sequence Information

Coding Sequence: atggATGAACAAAGATATCAAATCCAGTGGGTTGAAGCAATTgatcatgaaaatgaaattgttaCAGAAGAAGTTATATCTGTTGAAGGTCAAGATGAAGATGATGGAAATCATGAAGAATATCTTGTTGGTGAGGAGATTATCTCACATGCTGAAATGAATTCAATACCAAATAGTTTACATCAAATTGCTGCcgaaaatttaatatacatGGCACAAGATGGTCACGTTGGAACCATGGGAGATTTAATTGAAGAAGATGTCGTTGAGCAAGTTGATAATGTCGATTATAATGATCAACAATATTTTGAATGTCAAGTAACTGAAGAAGTTATTACAGATGATTGGGTACAACAGCAAGGCGAAGAAAGAGTTGAAATACCGGTTGGTCAATTGTGCGGTTCAGGTGGTGATGGTCAAATCGTAGAAGAAATGGATGTACCTTTACCAACCGATCAAGATGAATACACTGCCCTAAGACCGTATCCTTGTGATTTTTGTAGTCGTCGTTTTCGTAAGAAAGCAAGCCTAATGAATCACATGATAGCACATCAAAATGATCGACCACATGTTTGTAATTTATGTGGAGCTCGATATATTCGTCGTAGTGATTTACTTAATCATTTGAAAATTCATGCACATATTCCAGAGCAACGATTGGATGATATCGATAATGATAATTTTCTTAATGATCATATTGGAGCAAGAACATCACGAAAATATGattattatgatgatgatgaagatgaaaTCGAAGAAAGACCAAAACCAAAAGGTAGACgtaaaaagatgaaaattaaaCAGGAAGAAAGATATTCTGAACATGAACATGTTAATGAAGAACAACAAATTCAGGAGCAAAATATTGAAAGATATCCAATAACAGATCCAAGAAAACCATTCGTTTGTCAACAATGCGGTATAGCTTTTGCCCGAGAGAAAGCACTTTTATCACATTCAAGGATACATGGTGGAGATTCACCATATGAATGCGCAACATGTAACGAAATGTTTTGGGATATGAACATGTTACATGATCACCAAAGAACACATCATTTTGAAGCGAGTAATTCAGAATATGAACCAGAAAATGATGAAGAAACTGAATCGGAAACTGATTCAAAATATGGTGAATATTATTGTGATGTTTGTGGTATGTCATTTCATAGGCAGGATTTATTGAAACGACATACAAAAACTCACGTAAAAATGGAATTCTCTGAAGGTGATTCGAAACATTGCTGTAATGTTTGTGGAGAAACATTTCTAGAAGCTTTAGATTTATTGGCTCATGCCGAAATTCATGCAAGATTTCAACCATTCaaATGTATGTTATGCGGTGAAACCTTTTTAGAAGAAGCTACTATTAAAAAGCATTTAACAAATGTACATTCATCTGAGATGACCGCAAATACATGTCGATTATGTGGAAAACAATGTCGAGATGGACGAGCTCTTATGAAACATGCATGGGATCATTCGAGAGAAAAAAACCATTCTTGTTCAAAATGTGGAAAAACTTTTCATAATAAAGCAAGACTTAAGCGTCATATGGTTTCACATCGTAATAAATCCGTAATATGTGATGTGTGCCAAGAAGAATTTCCAGATGGACGTTCTCTTATGAATCATCGTCATTCACATAACAATTCATCGGGAAAACTATTTCCATGTCATGAATGTGGTAAAACATTCGGTTCAAGAAGTTCACAACAAATCCATGTTCGAATACATACTGGTGAACGGCCATATGGTTGTAGATTTTGTTGGAAAGCATTTGCAGATGGTGGAACATTAAGAAAACATGAACGTATTCATACAGGTGAAAAACCATATGCTTGTTCTGTTTGTCCAAGAGCATTTAACCAAAGAGTTGTTCTACGTGAACATATACGTTCACATCATTCAGCACCTGATACAAAACGTGGAACATCTATGATGCCTTTTTATTGTACTGTCTGTACAGATATGTTTTCCACATCAGTTGATCTGATACAACATTTAATACAACATAGCGATATGAATACAGCGATCCATCGGCAACCAATTACTGGTCCAAGAAAGTATAAACGTCGCCGAAAATTGAAACAGCATGAATTAGAACAGTTACGTAATGAAAAATCAAATACAAGCGATATAGATTATTCGGATTTGGAAATGGGAAATGTTGATGATTTGTTAGGTATTAGTAGTAAAAGTACTACAAGAcgtagtaataataataataacaataataataatcgttTAATGACAACAAGTACATATGTGCCATCATCTCAATCAAATCGAAAACGAAAATATTCTCATAATTCGGATAAAATATCATCGAATAATTGGCAACAGAAATTAATGGCATCAACATCAACTGATGATACATATAATTCCGTATttcagaatttagaaaatgcaTTACAAAATATTGATTCTTTAGttgtgaataataataataatacaaatattaataataattcatcaCAAGCAATTAGTAATGTTGTAACAACACCGAAAACGCAAAAAGCAACTAGACGACGAACAAATAAACACGAATTGATTGTTGAGAAACCATCACGGCCGAAAATGATTCATACACAAAAAACACGAGTTACTGTCGAGGATGGTAAACGTAAAACGCGTACAATGATAACACGGACAGAACCAGCAGAAATCGATGATAATGTTTTGCAACAATTTGATCGCTCTAAAACAATAACAGAAAGAAATTATCATGATTATGAATTAGTATCTGCAGAAGATCCtttaaaaattcatcaaaataataGTTCTAgtcaaattgttattaaacAAGAACAAATACAACGTAGTGATATATTTGATGCACAATTATTACTTGAAGCAGCATCGATGCGTAAAGAATTGGAAAAATACAATCCAGATGTTGTTAATGATTTGGAAGAGATATTGCGTTCACcaattaaattgaaaagatCGCCAAAAATATCTTCTAGTTGTGGCAACTGTGGTATCATAACAACCACACCAAATAGTAGTACCGATTTATCAATAGAATATGATAAAACTGAACGTAATATTGATTATAACAATCAACAATCTGATGAAGTAAGACGATCAAGTCGTATTAAAAAATctgtacaaaataaaaaatatttagagTTTGAAACTTCGCTGATGAATAAATCACCGTCAACATCATCGTCGTCTTCGACAAATCGAAATCAACAGAATAAAatcaaacaagaaaaatatgataaaattgaaataaaaacggAGAAAACTGATGATAATGAACAACATCATCATAGAAAATCAACAGAACGTTTTTTTCAATGTGAAATGTGTTGTGCTGTATTTCCAGATCGTACACAACTTTTGGTACACGTACCTGTTCATATATAG
Protein Sequence: MDEQRYQIQWVEAIDHENEIVTEEVISVEGQDEDDGNHEEYLVGEEIISHAEMNSIPNSLHQIAAENLIYMAQDGHVGTMGDLIEEDVVEQVDNVDYNDQQYFECQVTEEVITDDWVQQQGEERVEIPVGQLCGSGGDGQIVEEMDVPLPTDQDEYTALRPYPCDFCSRRFRKKASLMNHMIAHQNDRPHVCNLCGARYIRRSDLLNHLKIHAHIPEQRLDDIDNDNFLNDHIGARTSRKYDYYDDDEDEIEERPKPKGRRKKMKIKQEERYSEHEHVNEEQQIQEQNIERYPITDPRKPFVCQQCGIAFAREKALLSHSRIHGGDSPYECATCNEMFWDMNMLHDHQRTHHFEASNSEYEPENDEETESETDSKYGEYYCDVCGMSFHRQDLLKRHTKTHVKMEFSEGDSKHCCNVCGETFLEALDLLAHAEIHARFQPFKCMLCGETFLEEATIKKHLTNVHSSEMTANTCRLCGKQCRDGRALMKHAWDHSREKNHSCSKCGKTFHNKARLKRHMVSHRNKSVICDVCQEEFPDGRSLMNHRHSHNNSSGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSAPDTKRGTSMMPFYCTVCTDMFSTSVDLIQHLIQHSDMNTAIHRQPITGPRKYKRRRKLKQHELEQLRNEKSNTSDIDYSDLEMGNVDDLLGISSKSTTRRSNNNNNNNNNRLMTTSTYVPSSQSNRKRKYSHNSDKISSNNWQQKLMASTSTDDTYNSVFQNLENALQNIDSLVVNNNNNTNINNNSSQAISNVVTTPKTQKATRRRTNKHELIVEKPSRPKMIHTQKTRVTVEDGKRKTRTMITRTEPAEIDDNVLQQFDRSKTITERNYHDYELVSAEDPLKIHQNNSSSQIVIKQEQIQRSDIFDAQLLLEAASMRKELEKYNPDVVNDLEEILRSPIKLKRSPKISSSCGNCGIITTTPNSSTDLSIEYDKTERNIDYNNQQSDEVRRSSRIKKSVQNKKYLEFETSLMNKSPSTSSSSSTNRNQQNKIKQEKYDKIEIKTEKTDDNEQHHHRKSTERFFQCEMCCAVFPDRTQLLVHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -