Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730478.1:53842166-53846325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6e-06 0.00019 22.5 1.4 1 23 243 265 243 265 0.97

2 11 0.0003 0.022 16.0 0.3 1 23 271 293 271 293 0.97

3 11 3.2e-05 0.0023 19.1 0.4 1 23 299 321 299 321 0.98

4 11 0.097 7 8.2 6.3 1 23 327 349 327 349 0.98

5 11 0.65 47 5.6 0.5 2 23 564 582 564 582 0.92

6 11 8.9e-06 0.00065 20.9 1.1 1 23 588 610 588 610 0.98

7 11 3.1e-05 0.0022 19.2 0.2 1 23 616 638 616 638 0.96

8 11 5.3e-05 0.0039 18.4 0.3 1 23 644 666 644 666 0.96

9 11 0.00038 0.028 15.7 11.2 1 23 672 694 672 694 0.99

10 11 1.9e-05 0.0014 19.8 1.9 1 23 700 722 700 722 0.99

11 11 7.2e-05 0.0052 18.0 0.7 1 23 728 750 728 750 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6e-06	0.00019	22.5	1.4	1	23	243	265	243	265	0.97
2	11	0.0003	0.022	16.0	0.3	1	23	271	293	271	293	0.97
3	11	3.2e-05	0.0023	19.1	0.4	1	23	299	321	299	321	0.98
4	11	0.097	7	8.2	6.3	1	23	327	349	327	349	0.98
5	11	0.65	47	5.6	0.5	2	23	564	582	564	582	0.92
6	11	8.9e-06	0.00065	20.9	1.1	1	23	588	610	588	610	0.98
7	11	3.1e-05	0.0022	19.2	0.2	1	23	616	638	616	638	0.96
8	11	5.3e-05	0.0039	18.4	0.3	1	23	644	666	644	666	0.96
9	11	0.00038	0.028	15.7	11.2	1	23	672	694	672	694	0.99
10	11	1.9e-05	0.0014	19.8	1.9	1	23	700	722	700	722	0.99
11	11	7.2e-05	0.0052	18.0	0.7	1	23	728	750	728	750	0.99

Sequence Information

Coding Sequence: ATGGATTATtccgaaaataatataaaatttaaacattttgatTCCATTTGTCGGTTTTGtttaaaaagtgaaatttcTTTGAGGCCAATATATACCGAAGATGATCTTGCCTCCGAGTTTGGAAATGCAAACGAGAGTGTCATTGAAATGATTGCGAATTGTACAAGAATCGAAATGTCTTTGAATGATTCTTTACCAAAATTAATGTGTTCAGGATGTTTGGATCAACTTTTAAAATGCAGCAATTTTCGTCAACAATGCCTGAAATCGGACGAAATCTTAAAAAACATAGTAATAAATTACAGAAATGATGAAATCGCTAATGAATTGCATATGGAACAATCCAAATTAAATCTTGATAATACTATTAAAAcgGAATTTGGCATTAAAATTGAAGAAGAGgaagtaataaataaaacagGAGCTCAATTATGCGAAATAGAAATAACTgaagaaaaagaagataaaaaatcatgtttacaattgatagaaaaaaagattaaaattcgATTATCTACTAAAAGAAAACGAGCTGGAAAATGTAAATCGGATGAAAAGAATCTCGATCAAAGTGAAAAGTCaaaagtgaaaaagaaaaattctgaGAAAGAAGTCATGGAAGAAAaatcccaaaagcgaatatataaAGCTAATCAGTGCCAAATTTGTGGTATAATGTCCAAAAAAATTGAGTTACATATGTTAATACATACGGGAGAGAAAAATTATAAGTGCACATTATGCGAACGGAGTTTTGCACAAAAAGGATATCTTAAAAAGCATATGGatcttcatttaaataatagagAATTTAAATGCGATGCATGTGAGAAAGCATTTAATACAGCGAAAGCCCTAAAAGTTCATTATGTTCGTCATACTGGTGAAAAGAATTTCATCTGTGATGTTTGTAATGAAGCATTCAAATATTTAAGTGTTTTACGCCGTCATAGACGTATTCATTTTGAGGATCGTCGTTATGAATGTAACATTTGTCATAAATGGTTCTATACAAGATATTGTGTTACAAAACACAATCGAATTCATACAGATGAAAGACCATACAAATTTTTTCTGAAGCCAATATTTCATGAAGAGGATAGCGAAGATGATGATTTTGCCTCCAACGATGGAAATGGAAACGAGAGTGTCACTGAAATGATTGAAAATTGTACAAGGATCgaaATCTGCTCAACGGATTCTTTACCGAAATTTATGTGTTCAAGCTGTTTGGATCAACTTTTGAATTGCAGTAATTTTCGTCGACAATGTCTTAAATccgatgaaattttaaaaagtatagTTAAACAGGGCAccgaaaatgaaaatgatatatCTGATGATAAACAACCAAAATTAGATACAATTAAAATGGAAGTTTATATAAAAGACGAAGAActtgaagaaataaataaagcaTCGGATGAACTATTTCCCATAAAACCATACAAAGTTGAAATAAGTGACGATAAACAAATGGAATTAGATAGTGAAGTAGATTCTCAAATAGCATCTTCTAATATGAAAAAGGACcaagaaaatgtcaaaaataaaattgaagagAAGTGTGCAAAATTTGAACAAGAAAATAATCACCAcgaaattataatagaaacagAATCAGGAaatacaaacacaaaaaaagaaggTATCCAACAAAAATCACGAAAGCCAAGGAAAAGATCTAGGCAATGTCAAGTATGCGGTTTAATGGTTTCATATCTCACTACGCACATGCTAACACATACGGGCGAGAAGAAATTTAAGTGCACGATGTgtgaaaaaagtttttctataaAAGGAGCTCTCACAATGCAcatgaaaaatcatttaaacACAAGagAATACAAATGTGATATATGTCAAAGAGCATTTAATAATCCAATTTCATTGAAAGTTCATTATATTGGTCATACCGatgaaaagaatttcatttGTGATGTTTGTAACGAAGCGTTCAAATATCCGACAACTTTACGACGTCATAGACTAGCACATTTTCAAGATCGTCGTTATGAATGCAGTATTTGTCATAAATGCTTTTACACAAAATATTGTCTCACGAAACATAATCGAACACATACAGGAGAGAAACCTTATCAATGCGAATATTGTCCAAAACGTTGTTCACAATCTGGAAGTTTAATAATGCATACAAAGATTCACACGAACGGAGCACCTTATAAGTGTTCCGTTTGTGAGAGCAGTTTTGTTTATAAAGCGGATTTGAAGGAACATTTGAAAAGTCATGAAATAACAGAAAATGAAGATAAGGCGGAGACAATCGATGAAAGTAATACAATCGGTAAAGAAATTCATATGCAAAATGGATTGTGTACATCATAA
Protein Sequence: MDYSENNIKFKHFDSICRFCLKSEISLRPIYTEDDLASEFGNANESVIEMIANCTRIEMSLNDSLPKLMCSGCLDQLLKCSNFRQQCLKSDEILKNIVINYRNDEIANELHMEQSKLNLDNTIKTEFGIKIEEEEVINKTGAQLCEIEITEEKEDKKSCLQLIEKKIKIRLSTKRKRAGKCKSDEKNLDQSEKSKVKKKNSEKEVMEEKSQKRIYKANQCQICGIMSKKIELHMLIHTGEKNYKCTLCERSFAQKGYLKKHMDLHLNNREFKCDACEKAFNTAKALKVHYVRHTGEKNFICDVCNEAFKYLSVLRRHRRIHFEDRRYECNICHKWFYTRYCVTKHNRIHTDERPYKFFLKPIFHEEDSEDDDFASNDGNGNESVTEMIENCTRIEICSTDSLPKFMCSSCLDQLLNCSNFRRQCLKSDEILKSIVKQGTENENDISDDKQPKLDTIKMEVYIKDEELEEINKASDELFPIKPYKVEISDDKQMELDSEVDSQIASSNMKKDQENVKNKIEEKCAKFEQENNHHEIIIETESGNTNTKKEGIQQKSRKPRKRSRQCQVCGLMVSYLTTHMLTHTGEKKFKCTMCEKSFSIKGALTMHMKNHLNTREYKCDICQRAFNNPISLKVHYIGHTDEKNFICDVCNEAFKYPTTLRRHRLAHFQDRRYECSICHKCFYTKYCLTKHNRTHTGEKPYQCEYCPKRCSQSGSLIMHTKIHTNGAPYKCSVCESSFVYKADLKEHLKSHEITENEDKAETIDESNTIGKEIHMQNGLCTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -