Xate024556.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730484.1:2347990-2352393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00089 0.065 14.6 2.8 1 23 73 95 73 95 0.95 2 16 0.011 0.83 11.1 3.3 1 23 101 124 101 124 0.91 3 16 0.00068 0.049 14.9 0.5 2 23 128 150 127 150 0.95 4 16 0.004 0.29 12.5 0.1 1 20 158 177 158 179 0.93 5 16 0.025 1.8 10.0 0.2 1 23 187 209 187 209 0.97 6 16 1.3e-05 0.00093 20.4 4.5 1 23 215 237 215 237 0.96 7 16 0.00022 0.016 16.5 2.7 1 23 243 265 243 265 0.97 8 16 5.2 3.8e+02 2.7 2.9 1 22 271 292 271 292 0.94 9 16 0.014 1.1 10.8 0.5 2 23 620 642 619 642 0.95 10 16 0.0013 0.093 14.1 3.7 2 23 657 678 656 678 0.96 11 16 0.00032 0.023 16.0 0.1 2 23 714 736 713 736 0.95 12 16 0.046 3.3 9.2 0.5 3 21 760 778 758 779 0.93 13 16 0.00016 0.012 16.9 3.6 1 23 787 809 787 809 0.98 14 16 0.00031 0.022 16.0 3.0 3 23 817 837 815 837 0.95 15 16 5.3e-05 0.0039 18.4 0.6 1 23 843 865 843 865 0.97 16 16 0.0031 0.22 12.9 1.6 1 22 871 892 871 892 0.96
Sequence Information
- Coding Sequence
- atgggaaaatcaaaaaagaatacaaaaacTTGGTCAGAAGATGAAGATTCTGGAGATGAATCTGCAGGAAAAGTTCTATCGCACAGCGAAAGACGTTGCAAATTTTGTACAAAACTATTACGAAAACCCAGTGATATTTCAGTACATGAAAGTATATGTCCAAAAGCAATTTCCAATATCGAAAAAGTGATAATTTCTGAAGATGGTCGAAAAAtctttttatgtaaaatttgtttgaaaacatttaaatttttatccGGATTACTACGTCATAAGAAACGACATGAGCCACCTGGAGGCTATATATGTCGTTATTGTAATGAACGATTCTGCAAAGAAACTGACTTGATGAAGCACAAAGAAGATACTCATGAGgttttaaaatgcaaattatgtgatacgatatttaaaaatgattcaGAATTCTTAAAGCATATCGATTCTGTACATCAAGGACAAGATCGTGAACATTTTGTTTGTGAAACTTGCGGACAACAATTTCGAACACAAGCAATGCTTGGGATTCATACCGAATCAAAATGTGGTGCCGAAAAACCATATGAATGTTCAGAATGTGGTCTGAGATATATGACAAAAGGAAtattaaattcacataaattaattcataaaaatgaaaaatatcattGTTGTAGTTATTGTGGTAAAAGTTTTGTAAGCCGTGGTCAACTAACTGTCCATGAAAGACGACATACTGGTGAAAAGCCATATCATTGTGAAgtctgttcAAAATCATTTTCGCATCGTGAAAGTTTAGTTACGCATGCATCTGTACATACTGGAATAAAGCCATACGTTTGTGAATGCTGTAGTGCTACATTTTCTTGTATTGGAAATTTACAGAAACATCGTCGTACACGTCCATCAACATGTGGTCTTCCACAGTATAAAACTAATGCAAAAGCTGCACCAAGACCTTCTTTAAAAAtTCCTGGTTCATTGAGAATGAaaactttgaaaataaaaaaaattaataaagtggTATTAACACCGGAAAATGTGATTTTTCCTAAAGATGAACAAATTAACGTATCTAATGAGGAAAATAATTCTAAGGAAACTGAAGAAGTTTTTAATGATTTACATCCAAAAGCAGAagatcaaaattttataaaaatcgacAGTTTAGATCCGTTATTAAATGATTCTCCAacagaaaacaaatttaattattccGTTGAATTTGAAAACGCTGGAAGTGAAATCACTGAAGAAATTAATGaaacaaataacaaaacaattataaatGAAACTAAAGTAAATTTAGAACTCCAAAATGATATTATTTATGCAATTATTGAAAAAgttGAAGAACAATCAGAATATGTTGAAGAATTggacaataaattaaaaatttctgatATAACATTAATAAATGATTGTAATACAGAAACTAATTTAAATTCTACTGAAATACAATCAACAGAATATATTGTTGACGAAATAGTATCAGAAAATAATAATGAGAACTTCGATGATGACATTTTAAAGAACGAAACTAAGGAATCTGAATTGTCTAGAGATcaagatgaaattaataatgaaggatttattatatataaaatagaatgCCAAACTGAAtgtaaaaatgaagaaaataatgaaaaaatatcatCTGAAAATGATATTTCAATGGAAGAAGATACAACAATTCTTATGAAGAAACTTTTAAGCGACAATGAAGAAGACTATGATAATGATGTAACAATTGGCCAAGATAATAATGATAGCAatgatgaaaaattttcttctatatctCAAGAATCCATAAAAGAAACAATGAAAGATACAAAACCAATAAAAATGCCTATTACAAAGCGAAAAGAGAAAAAACTAATCGAATGTTCACTATGTGCGAAAGCATATTATCAACggaaaacatttataaaacatttacaaaatgaacatcaacaaaatttaaaagatcATGAAAAACCTGATGATATGATCAAATGTTCATACTGtgataaaaaatataaacattttggTTCATATAAAAagcatttagaagaacatggaccagatagaaaattaatttataaaagtgTTTGTTGTCGAGAATATTTTGCATCCGAAGAAGAAGCTACCAAACATACGGCAACGGTTCATTATGATCGTGTCACATGTTTTGAGTGTCAACGTACTTATTCTGATCCCGAATCATTAGCAGCACATAAACGTTACgcacataataataataataatatgaaagaAGATAAAAACGATACTGATAATAAAGTAGCCAAGAAAAAGTTAGCATGTAAAAAATGTAATCGAAAATTCTTCGCAAAAACTGCTCTAACAGATCATGAACGTTCGAATTGTGGCAAAAATCCACTATATAAATGCGATGATTGTGGAAAACATTATCATAGTGCTGGATCATTAAAAACTCATCGTACAATTCATACTGGAAATTTACCGCATTTATGTCAATATTGTGGTAAAGCGTTTCGAACAGAAGGCCAAGTAACTGTCCATCACAGACAACATAGTGGAGAAAAGCCATATAAATGTGAAATGTGTCCTAAATCATTTGCATATCGCGAAAGTCTTGTTACTCATTTTTCAATTCATACTGGGAAACGACGATATGAATGTAAAAATTGTGGACTTCGATTTTCATGTGTATCTAATCTTCAGGCCCATCGAAAAACGAATAGCTCAACATGTGGAGCTGTACCAAATAATACAAAAGCGGTTGGCGATTACATTGGTGTAGCATCTGGAACAATTTATCTAGGTCAAAAATATGATGATAAACATTGA
- Protein Sequence
- MGKSKKNTKTWSEDEDSGDESAGKVLSHSERRCKFCTKLLRKPSDISVHESICPKAISNIEKVIISEDGRKIFLCKICLKTFKFLSGLLRHKKRHEPPGGYICRYCNERFCKETDLMKHKEDTHEVLKCKLCDTIFKNDSEFLKHIDSVHQGQDREHFVCETCGQQFRTQAMLGIHTESKCGAEKPYECSECGLRYMTKGILNSHKLIHKNEKYHCCSYCGKSFVSRGQLTVHERRHTGEKPYHCEVCSKSFSHRESLVTHASVHTGIKPYVCECCSATFSCIGNLQKHRRTRPSTCGLPQYKTNAKAAPRPSLKIPGSLRMKTLKIKKINKVVLTPENVIFPKDEQINVSNEENNSKETEEVFNDLHPKAEDQNFIKIDSLDPLLNDSPTENKFNYSVEFENAGSEITEEINETNNKTIINETKVNLELQNDIIYAIIEKVEEQSEYVEELDNKLKISDITLINDCNTETNLNSTEIQSTEYIVDEIVSENNNENFDDDILKNETKESELSRDQDEINNEGFIIYKIECQTECKNEENNEKISSENDISMEEDTTILMKKLLSDNEEDYDNDVTIGQDNNDSNDEKFSSISQESIKETMKDTKPIKMPITKRKEKKLIECSLCAKAYYQRKTFIKHLQNEHQQNLKDHEKPDDMIKCSYCDKKYKHFGSYKKHLEEHGPDRKLIYKSVCCREYFASEEEATKHTATVHYDRVTCFECQRTYSDPESLAAHKRYAHNNNNNMKEDKNDTDNKVAKKKLACKKCNRKFFAKTALTDHERSNCGKNPLYKCDDCGKHYHSAGSLKTHRTIHTGNLPHLCQYCGKAFRTEGQVTVHHRQHSGEKPYKCEMCPKSFAYRESLVTHFSIHTGKRRYECKNCGLRFSCVSNLQAHRKTNSSTCGAVPNNTKAVGDYIGVASGTIYLGQKYDDKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -