Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730480.1:5812026-5813699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2 1.6e+02 3.9 0.1 1 23 73 95 73 95 0.89

2 15 0.24 17 6.9 0.7 1 20 134 153 134 155 0.92

3 15 0.00064 0.047 15.0 5.7 1 23 163 185 163 185 0.99

4 15 0.0012 0.084 14.2 1.5 1 21 191 211 191 212 0.96

5 15 4.6e-06 0.00033 21.8 1.1 1 23 218 240 218 240 0.98

6 15 0.00083 0.06 14.7 1.6 1 21 246 266 246 267 0.96

7 15 0.00011 0.0082 17.4 7.0 1 23 297 320 297 320 0.98

8 15 1.9e-06 0.00014 23.0 5.1 1 23 325 348 325 348 0.98

9 15 0.085 6.2 8.3 1.4 1 23 357 379 357 379 0.99

10 15 2.9e-05 0.0021 19.2 6.0 1 23 385 407 385 407 0.99

11 15 0.0029 0.21 13.0 4.2 1 23 414 436 414 436 0.98

12 15 0.00011 0.008 17.4 8.5 1 23 442 465 442 465 0.98

13 15 0.0055 0.4 12.1 4.7 1 23 474 496 474 496 0.97

14 15 4.9e-06 0.00036 21.7 5.8 1 23 502 524 502 524 0.99

15 15 0.00016 0.012 16.9 4.7 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2	1.6e+02	3.9	0.1	1	23	73	95	73	95	0.89
2	15	0.24	17	6.9	0.7	1	20	134	153	134	155	0.92
3	15	0.00064	0.047	15.0	5.7	1	23	163	185	163	185	0.99
4	15	0.0012	0.084	14.2	1.5	1	21	191	211	191	212	0.96
5	15	4.6e-06	0.00033	21.8	1.1	1	23	218	240	218	240	0.98
6	15	0.00083	0.06	14.7	1.6	1	21	246	266	246	267	0.96
7	15	0.00011	0.0082	17.4	7.0	1	23	297	320	297	320	0.98
8	15	1.9e-06	0.00014	23.0	5.1	1	23	325	348	325	348	0.98
9	15	0.085	6.2	8.3	1.4	1	23	357	379	357	379	0.99
10	15	2.9e-05	0.0021	19.2	6.0	1	23	385	407	385	407	0.99
11	15	0.0029	0.21	13.0	4.2	1	23	414	436	414	436	0.98
12	15	0.00011	0.008	17.4	8.5	1	23	442	465	442	465	0.98
13	15	0.0055	0.4	12.1	4.7	1	23	474	496	474	496	0.97
14	15	4.9e-06	0.00036	21.7	5.8	1	23	502	524	502	524	0.99
15	15	0.00016	0.012	16.9	4.7	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGGCAGTCGAATTATTAGAAACggaaaacattttatttgcTGATATTAAAACTGACTTATTCGACGGCGAAGAAGGCGAATTATCTGAATTTATTATAACTGAAATTAAGGAAGAACCAGAATTAATTATAGAGGATGAAATCGAAAATGAAaagattcataaatttttaaatgaaaacgaTCGAACTAAAGAGGATCGAATGAATTTAGTTTGGTATAGTTGTGCAGTTTGCGAAGAACGTTTCTTAAGTATTGAAGATTTATCATTGCACAACGAAAGTCACATAAAATCTGAAGAAGAAATTTCAACTAGCATTTCGAATACCAGTAAAACACATCCTAAAAACGTTTCCAAATGTCCGCAGTTCAATATAAAGGCGAATACTGAAACGAAACGATTTAAATGCGATAATTGCAATTCTTCATATGTTaacaaaaacatattaataaaacataaattaaagaatatttgtgGACGACGACCTTACAAATGCCTTCATTGTATTAAATCATTTGATCACAATGATCAACTTCGAAATCATTTGAAATCTCATATTCAAGTGAAACCATATAAATGCGATCTTTGCGATCGTTCATATGCTTTGAAGAATAGTCTATTAAGACATCGAAAGCATTGTGGTGAAAGTCATTTCAGTTGCCGTGAATGTAATGAAACATTCGAGTCCAGAACTGATCTTCAAGTTCATATGAAATCGCATATTAAAATGAAACTATATAAATGCGATAGTTGTGACCGTTCATATGTTTTGAAAAAAAGTCTATTTAGACATCAAAAGCAATGTGGTGAAACACATTACAATTATTTTGAAAGTAATAAATCATTTGGGCACAGAGCTCATCTTCAAGCTCTTATTATTAGGAAGCCATATAAATGCGATCTTTGCGATCATTCATTTCGTGTGAAAAGTCACTTAGTAACACATCATCGAATGCAACATGGTGGACGAGCTTACAAATGTCATCAATGCGATGAATCATTTACACGCCGTTATTCTGTTCAAAGGCATATAAGAAGATTTCATAATAGACAAAGACCTGAAAAACCTTTTAAATGCGATCGTTGCAATTCTTCATATATTGAGGAAAAAAGGCTAGTAATACATTATCGAAAACATACTGGAGAACGACCTTACAAATGTCAGCATTGTAATGAAACATTTATGTACAGTCGCGCTTTCCGAAGACATATGAAGACTCATCCGGCTGATacgaaaccatttaaatgcgatCGTTGCGAACGTTCATATTGTTTGAAGAGAAGTCTAGCAAGACATTATCTAATGCATACCGGTAAACAGTCTTACCAATGTCATCAATGTGATAAATCATTTAAACGAAATTATTACCTTCAATGTCATATAagaaaaactcatattgttGGAAAACttgaaaatcaatttcaatgTGATCATTGTGATtgtttctttaatgaaaaagatAGTCTGGTAACACATTCACTATCGCATACCAATGAACGATATTACAAATGTTATCATTGCAGTGAAACATTTGTACACAGTGATGGTCTTCGAAGGCATATGAAGACTCATACTATcgtaaaacaatttaaatgtgGTCATTGTGATTGTTCATTTGTTGAGAAAAGTAGCCTAGTGAAACATTACCTCTCGCATACTAATGACCAGTCGTAA
Protein Sequence: MAVELLETENILFADIKTDLFDGEEGELSEFIITEIKEEPELIIEDEIENEKIHKFLNENDRTKEDRMNLVWYSCAVCEERFLSIEDLSLHNESHIKSEEEISTSISNTSKTHPKNVSKCPQFNIKANTETKRFKCDNCNSSYVNKNILIKHKLKNICGRRPYKCLHCIKSFDHNDQLRNHLKSHIQVKPYKCDLCDRSYALKNSLLRHRKHCGESHFSCRECNETFESRTDLQVHMKSHIKMKLYKCDSCDRSYVLKKSLFRHQKQCGETHYNYFESNKSFGHRAHLQALIIRKPYKCDLCDHSFRVKSHLVTHHRMQHGGRAYKCHQCDESFTRRYSVQRHIRRFHNRQRPEKPFKCDRCNSSYIEEKRLVIHYRKHTGERPYKCQHCNETFMYSRAFRRHMKTHPADTKPFKCDRCERSYCLKRSLARHYLMHTGKQSYQCHQCDKSFKRNYYLQCHIRKTHIVGKLENQFQCDHCDCFFNEKDSLVTHSLSHTNERYYKCYHCSETFVHSDGLRRHMKTHTIVKQFKCGHCDCSFVEKSSLVKHYLSHTNDQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -