Xate028008.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730485.1:19547912-19555090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0015 0.11 13.8 2.3 2 23 233 254 232 254 0.95 2 15 0.00054 0.039 15.3 5.6 1 23 257 279 257 279 0.98 3 15 0.00021 0.016 16.5 5.1 1 23 283 305 283 305 0.99 4 15 7e-06 0.00051 21.2 2.0 1 23 311 333 311 333 0.96 5 15 0.0069 0.5 11.8 1.0 1 23 339 361 339 361 0.97 6 15 0.0048 0.35 12.3 0.8 2 23 507 528 506 528 0.96 7 15 0.00046 0.033 15.5 6.6 1 23 531 553 531 553 0.98 8 15 4.9e-05 0.0036 18.5 3.3 1 23 557 579 557 579 0.99 9 15 5.2e-06 0.00038 21.6 1.5 1 23 585 607 585 607 0.96 10 15 0.0091 0.66 11.4 1.5 1 23 613 635 613 635 0.95 11 15 6 4.3e+02 2.5 0.1 13 23 648 658 644 658 0.81 12 15 0.00045 0.033 15.5 1.6 1 23 664 687 664 687 0.91 13 15 6.4e-06 0.00047 21.3 1.4 1 23 693 715 693 715 0.98 14 15 5.2e-05 0.0037 18.5 0.6 3 23 722 742 720 742 0.98 15 15 1.1 80 4.8 0.1 1 16 748 763 748 765 0.90
Sequence Information
- Coding Sequence
- ATGAATTGCGTAAAGAAAACATTAGAACTTATTAAAACTGAACCAGCCAATATATCATCACTTGATTGTAAACTATCTTCATATGAAATGTCAAACACTCGACAAATATCTACATCAAAGCCATCAGCCAATCATATTCAAAAAGTGATCTTATCACCAAGAATGGATTACAATCTGACAAACGGCAATTATTTGAATTGCTCGTCAAGTTTTGACGCTTCATCGTGCCAAGGATCTGAAGAATCCAATATATTTATAACTACAACGACCCCGCCTAGTAGTGTATCAGTAATGCCTTCTACTCAGCAAGTTCGAGTAATTTGTGACGGTCGATTTTATGATGAATCAAGACAAAATTCAATATCACCACCACCTCTACCTCAATTAAATAAGCCCGCAATACAAGCATTTGAAAACGAAAGGGATTCACGTCAACTATACAAACAACAATCGGCCATACTccatgttaaattttcaattcgatttgaagtcgatctggATACAAGTGCAGACGTCACAACTAACTCGGTTCTAGAATTATGCGATAGAAATGACCAAAAATACGAAACTACGGAAATGGTAAAAATTGAATGTCCCGACATTGAAGAAAATGTTAAGAATTTATTAGAGTTGGCGAATTCAGAAGATAAGGAAAAATtggaaatagaaaagaaaactcaTATTGAAGACAATTTAGAATGTAAAATTTGCGGTAAAAAATTTGATGCCTCAAAGAAATTGAAGATTCATTTTCATATGCACAAGGAATATTTTTGTAAGCATTGTGGAAAATCTTGTAGTGGACTTAATCAATTATTGAGGCACGAGAAAACACATACTGAATCTTATAAATGTCATATTTGTCAGAAaaATTTGCATAACGCTAGCAGTTTACGAACTCATCTTCAAACACATACTGAAATTAAATCGTACCTTTGCGACATTTGTGGAAAAAgtTTCGCTCGTGCCACTTGCTTAAAAAAGCATAAACAAATTCATGCGGATAGTCGATCATTCGAATGTGATATGTGTGGTAAACGTTTTTTGACAAATACTGTTTTAGCccaacacaaaaaatatcattgCCGGAAAAATATCGCAGAAAATGATGGACTACCACAGCAAATTTGTGAAGTCTGTTTCGAAAGCTGgtcaaaacttaaaatttttcgaGAAACATGCAAAACATCACAAATcactttaaaagaaaagttttcaaaGAATTTAAGTTCGTTGAGTCAGGAGGAACAAAATGATAATTGGATGGACGAAGAAGCTTTCATagagaaatttgaaaatgaaATAGATACAAGTGCAGACGTCACAACTAACTCGGTTCTAGAAGTATGCGATAGAAATGACCAAAAATATGAAACTACGGAAATGGTAAAAATTGAATGTCCCGACATTGAAGAAAATGATAAAGATTTAATAGAGTTGGCAAATTCCGAAGATAAGGAAAGTTCATTTAAGGATAAATTGCGTCTAAAAGAAAGAATTTATATTGAAGGTGATTTAGAATGTAAAGTTTGCGTTAAAAAATTCGATACTGTAAGAAAATTCAAAGTTCATCTTAATATTCACAAGGAGTATTTTTGTAAACATTGTGGAAAAACTTGTAGCGGACGTAATCAATTATTGAGACACGAGAAAACACATACTGAATCTTACAAATGTCATATTTGTCAGAAAAGTTTGCAATATGCTAGCAGTTTAAAAAGTCATCTTCAAACACATACTGGAATAAAATCGTACCTTTGCGACATTTGTGGAAAAAGTTTTGCTCGTGCCACTTGCCTAAAAAAACATGAACTAACTCATGCGGATAGTCGATCATTCGAATGCGATATGTGTGGTAAACGTTTTTTGACAAAAACTGTTTTAGTCAAACACAAACAATTTCATTGTcgcaaaaatatatttaagtctGCTTTTCGAGTAGGAACTTCGCTAACTCTGCATATGCAAACACATTCAAAGGATCGAAATCATGCCTGCAATATGTGCGAAAGTCGATTCAAAAGAGCTGCTCACTTACAAAGGCATATTACAGCTGTTCATTTGAAAGAAAGACGATATTCGTGTGAACACTGTAATAAAACCTTTGCTGAAATAGATGGACTAAATAGGCATATGACAACTCATACTGGTAAAAAATTTGGATGTCCACATTGTGATAAGTCTTTCGCTTACGCCAAAGACATGCGTATACACGAGAGGATTCATACCGGCGAGAAACGATACTTATGTGGTATTTGTTTAATGAGCTTTGTCGATTCTAAAAATCTTTATAGTAATTATAAATAA
- Protein Sequence
- MNCVKKTLELIKTEPANISSLDCKLSSYEMSNTRQISTSKPSANHIQKVILSPRMDYNLTNGNYLNCSSSFDASSCQGSEESNIFITTTTPPSSVSVMPSTQQVRVICDGRFYDESRQNSISPPPLPQLNKPAIQAFENERDSRQLYKQQSAILHVKFSIRFEVDLDTSADVTTNSVLELCDRNDQKYETTEMVKIECPDIEENVKNLLELANSEDKEKLEIEKKTHIEDNLECKICGKKFDASKKLKIHFHMHKEYFCKHCGKSCSGLNQLLRHEKTHTESYKCHICQKNLHNASSLRTHLQTHTEIKSYLCDICGKSFARATCLKKHKQIHADSRSFECDMCGKRFLTNTVLAQHKKYHCRKNIAENDGLPQQICEVCFESWSKLKIFRETCKTSQITLKEKFSKNLSSLSQEEQNDNWMDEEAFIEKFENEIDTSADVTTNSVLEVCDRNDQKYETTEMVKIECPDIEENDKDLIELANSEDKESSFKDKLRLKERIYIEGDLECKVCVKKFDTVRKFKVHLNIHKEYFCKHCGKTCSGRNQLLRHEKTHTESYKCHICQKSLQYASSLKSHLQTHTGIKSYLCDICGKSFARATCLKKHELTHADSRSFECDMCGKRFLTKTVLVKHKQFHCRKNIFKSAFRVGTSLTLHMQTHSKDRNHACNMCESRFKRAAHLQRHITAVHLKERRYSCEHCNKTFAEIDGLNRHMTTHTGKKFGCPHCDKSFAYAKDMRIHERIHTGEKRYLCGICLMSFVDSKNLYSNYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -