Xate014859.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730481.1:12716259-12719289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0033 0.24 12.8 0.7 1 20 88 107 88 109 0.93 2 15 0.00018 0.013 16.8 2.3 3 23 119 140 117 140 0.95 3 15 7.6e-05 0.0056 17.9 0.2 1 23 141 163 141 163 0.96 4 15 3e-05 0.0021 19.2 2.4 1 23 169 192 169 192 0.97 5 15 0.18 13 7.3 1.7 2 23 198 219 197 219 0.96 6 15 0.0052 0.38 12.2 5.1 1 23 225 247 225 247 0.97 7 15 6.8e-06 0.0005 21.2 0.8 1 23 253 275 253 275 0.95 8 15 6.3 4.6e+02 2.4 3.3 1 21 281 304 281 306 0.63 9 15 4e-05 0.0029 18.8 1.6 1 23 321 343 321 343 0.99 10 15 0.0049 0.36 12.2 4.8 1 20 349 368 349 370 0.95 11 15 1.2e-05 0.0009 20.4 2.2 1 23 384 407 384 407 0.97 12 15 2.2e-05 0.0016 19.6 0.9 1 20 413 432 413 433 0.97 13 15 0.0057 0.41 12.0 0.7 1 23 442 464 442 464 0.96 14 15 8.4e-05 0.0061 17.8 5.5 1 23 470 492 470 492 0.98 15 15 0.00051 0.037 15.3 5.3 2 23 499 520 498 520 0.96
Sequence Information
- Coding Sequence
- atggaatatttaaatgaaaatgaagatcAAATAACCGAAATTCCAACCAGTGAAGATGAAGAGGCACATTCATCAAATGAAATAATCttggaagaaaccaatgatacAAATCATGATGaaattttgaatgattttgAATTTGTTGAATCATCTGAAACTAGTAATTTAGTTTTTGAATGTCctgaaaaatctaaaaatattttagatcaacATAATGAAgaatCAAATAATACATTAGAAACAAATGATAAGACAATATCATATAATTGTAATGATTGCCAAAAGATATTTCCAAATGAAATACTATTAAATGAACATAAATGCAACTTAACTGATAAAGTCGAACAAATCAATTGTTCACATTGTGAAAAacaatttacaaataaaactaaactagAAGAGCACATAACAAAAGtgcattttatttgtaaaatttgtGGACGAACTTTAAAAAGTGCGAATTCTTTACGATCACATTTAGGAGTTCATAATGCAAATGATTTATACAAATGTGATATTTGTAATCAAGGCTTTAAAACTCAGTATTATGTTCAAAGGCATAAGAAATCTTTACATGAAAAATCTGATTTAGAGTGTAAAACATGTTTTATGAAATTCGAAAGTATCCCGAAATTTCGATATCATTTAAAATCTCATGATCCAAGTAAAAaacattattgtaaatattGTGAGAAATCATTTTTACAacttattcatttaaaaaatcacGAACGAATCCATAATGGCCAGAGACCATTCCTTTGTAGTATTTGCGGTAAAGGTTTTAAACAGGATAGTTATTTAAAACTACATACAAGAATTCATAGTGGTGTTAAACCGTATGTTTGTAAAATTTGTGGAACAGGTCTTAAAAGTCTTTGCTTaataATATCTTATGATAGACACATGCAAAATCATGAGGGAATTACCAGTGACACCAATCATACCAATATTATACCATATCAATGTGAGATTTGTGGTAAAGGTTATCaaacaaaactttatttatataatcATAAAAGAACTCATACCGGCGAGACACCATACAAATGtgatttatgtaaaaaaacGTTTATGCAACAGCAACAATTAAATTATCATAAAtgtttcattaataaaaatgataatgaaattgaaattatcgATTGTTATAATTGTCCGATTTGTTCGAAAATCTTTAAATTATCATCATCTTTAACATCACATATAAATCGGTGTCATACTGGTGAACGGAAATATAGCTGTAATGAATGtggtaataaatttaaaagatcAGCTCATTTAAAATCGCATATTGATTGTGTTCATTTAAAATTACGACCGCATATAtgtaatatttgtaataaaGCATTCTTTCAAGCTGGTGAACGTGATATCCATGAAAAAACTCATATACataaaaatctACATAAATGTGAAATTTGTCATAAGTCttttaaaaatccaaaatcTATGAAACTACATAATCGTATtcatactggagaaaaaccatGTAAATGCAGAATATGTCCAATGGCTTTTACAAATCATAATTCGTTAAGTTatcATATGAGAAAACACACAGATGCCGAGAAAAAAGAAGAACGAAATCAACTAGTTGCAGAATTGCAGCATTTACGATAG
- Protein Sequence
- MEYLNENEDQITEIPTSEDEEAHSSNEIILEETNDTNHDEILNDFEFVESSETSNLVFECPEKSKNILDQHNEESNNTLETNDKTISYNCNDCQKIFPNEILLNEHKCNLTDKVEQINCSHCEKQFTNKTKLEEHITKVHFICKICGRTLKSANSLRSHLGVHNANDLYKCDICNQGFKTQYYVQRHKKSLHEKSDLECKTCFMKFESIPKFRYHLKSHDPSKKHYCKYCEKSFLQLIHLKNHERIHNGQRPFLCSICGKGFKQDSYLKLHTRIHSGVKPYVCKICGTGLKSLCLIISYDRHMQNHEGITSDTNHTNIIPYQCEICGKGYQTKLYLYNHKRTHTGETPYKCDLCKKTFMQQQQLNYHKCFINKNDNEIEIIDCYNCPICSKIFKLSSSLTSHINRCHTGERKYSCNECGNKFKRSAHLKSHIDCVHLKLRPHICNICNKAFFQAGERDIHEKTHIHKNLHKCEICHKSFKNPKSMKLHNRIHTGEKPCKCRICPMAFTNHNSLSYHMRKHTDAEKKEERNQLVAELQHLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -