Xate026643.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:45329202-45330614[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5.8 4.2e+02 2.6 3.6 1 23 65 87 65 88 0.93
2 13 2.8e-05 0.002 19.3 6.1 1 23 124 146 124 146 0.99
3 13 9.5e-07 6.9e-05 23.9 6.0 1 23 152 174 152 174 0.99
4 13 0.0053 0.38 12.1 3.8 1 23 180 203 180 203 0.96
5 13 5.2e-06 0.00038 21.6 1.8 1 23 215 237 215 237 0.99
6 13 1.3e-07 9.6e-06 26.6 1.4 1 23 243 265 243 265 0.99
7 13 0.00044 0.032 15.5 1.1 1 23 271 293 271 293 0.99
8 13 6.2e-06 0.00045 21.4 1.6 1 23 299 321 299 321 0.99
9 13 0.0069 0.5 11.8 2.7 1 23 328 350 328 350 0.99
10 13 7.4e-05 0.0054 18.0 4.9 1 23 357 379 357 379 0.99
11 13 3.5e-07 2.6e-05 25.3 0.5 1 23 385 407 385 407 0.99
12 13 0.19 13 7.3 4.8 1 23 414 436 414 436 0.98
13 13 0.00043 0.031 15.6 6.3 1 23 443 465 443 465 0.99

Sequence Information

Coding Sequence
atggcaggaaaaatgttaaaaacaGAAACTGTTTATTTTCTTGACGAAAATCGATCTGAACCTAAAACATATGAAATtgcaattaaacaagaaccggaaTTGATTATAGAGGACGAATTGGAAACTGAGAAAATCCGtgaatttttgcataaaaacgATATAACTGAAGAAGATCGAAATAATTTGGTTTGGCATAATTGTTTAATATGCGAAGAGCGTTTCTTAAGTGTCGAGGATTTATCATTGCATCACCAAAATCACCACAATACTGAAGAAACTTCAACGAGTTCTTTGAATTACAGGGAATCACATCCTAATAACAATTTACGTCTGCAATCCCATATAAAAATGAATActaaagaaaaaccatttaaatgcgatCGTTGCGATTGTTCCTATACGACAAGTAGTCATCTTACAGTCCATTATCGAATACATACTGGTGAGTGTCCTTACAAATGTCATCATTGCGATAAAGCGTTTATAGAAAGTTATTCTCTAAAAAGGCATTTAAAGACGCATTCTaacgaaaaaccatttaaatgcgatCGTTGCAGTCGTTCATATAAAGAAAAACGTCATTTATTAGAACATTATGATCGAATTCATCTGGGAAGACATTTGACTACTGCCGAAAAACGCTTTAAATGTGATCTTTgcgatttttcatttattaaaaacagTAGCCTAGTAACGCATTACCGAACACATACCGGTGAACGGCCCTACAAATGTCAATCTTGTGATAAAACATTTGTCCGAAATGCTGATCTTCGTAATCATATAAAAACTCATACTGACGAGAAACCGTTTAAGTGCGATCGTTGTGTTTCTTCATATATCAATAAAAGTTCCTTGGTAATACATTACCGAACGCATACCGGTGATCGACCATACAAGTGTGATTTATGTGATGAAGCGTTTATAAAAAATGATTCCCTTCACAGGCATTTAAAATCTCATACTTATGAAAAAGCACAATTTAAATGTGATCTTTGTGAATGTTCCTACTTTTCGAAACAAGGACTTGTAATCCATTATCAAACTCATACAACTAATGACagaccatttaaatgtgatcgtTGCGATTGTTCATATAGTCAAAAGAGAAACTTGGTAGTACATTACCGAAAGCATACCGGGGAACGACCATACAAGTGTGATTTATGTGATGAAGCATTTACACGAAATGATTTGCTTCAAAATCATCTAAAATCACATACGGCCGAAGAAtcaccatttaaatgtgatgtTTGCGAATGCTTATACGTTTCGAAACAAGAACTTGTAAAGCATTGTCGAACTCATACAAATAGTCAGAAGCGATTCAAATGTGATCGTTGCGATTGTTCATATACTAAGAAGAATAGTTTGGTGAGACATTATCGAAAGCATACTGATGAAGCTCAGTAA
Protein Sequence
MAGKMLKTETVYFLDENRSEPKTYEIAIKQEPELIIEDELETEKIREFLHKNDITEEDRNNLVWHNCLICEERFLSVEDLSLHHQNHHNTEETSTSSLNYRESHPNNNLRLQSHIKMNTKEKPFKCDRCDCSYTTSSHLTVHYRIHTGECPYKCHHCDKAFIESYSLKRHLKTHSNEKPFKCDRCSRSYKEKRHLLEHYDRIHLGRHLTTAEKRFKCDLCDFSFIKNSSLVTHYRTHTGERPYKCQSCDKTFVRNADLRNHIKTHTDEKPFKCDRCVSSYINKSSLVIHYRTHTGDRPYKCDLCDEAFIKNDSLHRHLKSHTYEKAQFKCDLCECSYFSKQGLVIHYQTHTTNDRPFKCDRCDCSYSQKRNLVVHYRKHTGERPYKCDLCDEAFTRNDLLQNHLKSHTAEESPFKCDVCECLYVSKQELVKHCRTHTNSQKRFKCDRCDCSYTKKNSLVRHYRKHTDEAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-