Xate004250.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730478.1:48406534-48410155[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.11 8.2 7.9 3.2 2 23 169 190 168 190 0.96 2 18 7e-05 0.0051 18.1 0.5 1 23 196 219 196 219 0.96 3 18 0.011 0.77 11.2 1.5 1 23 226 251 226 251 0.95 4 18 4.5e-05 0.0033 18.6 0.8 2 23 263 284 262 284 0.92 5 18 0.0013 0.097 14.0 6.8 1 23 290 312 290 312 0.94 6 18 0.0026 0.19 13.1 1.8 1 23 318 340 318 340 0.97 7 18 0.08 5.8 8.4 0.8 1 23 346 369 346 369 0.96 8 18 2.5e-06 0.00018 22.6 2.0 1 23 375 397 375 397 0.99 9 18 0.002 0.15 13.5 0.7 1 22 403 424 403 424 0.94 10 18 0.00012 0.0084 17.4 2.7 2 23 493 514 492 514 0.96 11 18 0.0001 0.0076 17.5 0.4 1 23 520 543 520 543 0.96 12 18 0.0079 0.58 11.6 0.5 1 23 550 575 550 575 0.95 13 18 4.7e-05 0.0034 18.6 1.7 2 23 587 608 586 608 0.95 14 18 0.00061 0.044 15.1 5.3 1 23 614 636 614 636 0.92 15 18 0.032 2.3 9.7 2.8 1 23 642 664 642 664 0.97 16 18 0.01 0.73 11.3 0.9 1 23 670 693 670 693 0.97 17 18 5.3e-06 0.00039 21.6 4.1 1 23 699 721 699 721 0.99 18 18 0.002 0.15 13.5 0.7 1 22 727 748 727 748 0.94
Sequence Information
- Coding Sequence
- ATGGATTTGCACAGATTCTCAACAGAACATATTTGCAGAGTGTGTTTAAAAGaacttgaaaataataaatttggtATATTCGATATTCAAAGTTTACAGAAAATGTTCTTCGCCTGTACTTCAATGGAAATTGTCGAAGATGATGTTCACACGAAATTCTTGTGTGAAATTTGTTATAATACAATTGAGAAATTTTACAAGTTCCGAGAAATGTGTAAAGCTTCATATAATAAGTTACAGAACATGTTAAAAGTACATAACGAAGGAAAAAGTAAGAAAACTAGTGATGGTTTAACAAACTTTCTTAAAGTAGAATTAAAATATGACCAAAAAGAGGGAAACAATTTAGATTTCACGTCAGAATTTGTTATTAAGGAAGAATCaagtgataataaaaatgagTATATAGATGGAAACAATTCAAATATATCAGAAAGTGAAAGAGATTGTACAGAAAACAACCAACAGACTGCTTCTGAAGGTGCTAAACCACACAAAATGCTGAGCTGTGAATTTTGTACACAGAAGTTTCTGAAAGAGTCACGTCTTCATGCGCATATGAGAACACATAAAGGTTTGAAGCCATACCCTTGTAACGAGTGtgataaacaatttaataagaaaCATGGATTAGCTGTTCATTATGAAGTCGCCCACAGTAATTCGAATAAACTTTACCATTGTTCAGAGCCTGACTGTGATAAAGCGTACAGAACAAAAAGAGTTTTAGATTCGCATTTTAGGAAAATACACGTTTTAAAAGGTAGCACATCTCATACCGAATGTGTTTGTGATGCGTGTGGAAAAGTTTTCGCGAATAAAGCGAATTTGAGAAAGCATTCATACATTCATACCGGTGAGTTGCCATTTAAATGCAGTAAATGCCCAAAACGGTTTACAACTCGTTACAAATTGAAAGAACATTGTATGCGTCATGATGGAATAAAAAATTTCGTTTGTCCTCACTGCggcttaaaaaaaacaacaaacaaggAGTtgaaagttcatttaaattatcaTACAAAAGAGAAAGTCCATTATTGTCCTCATTGTTCTTCATCCTTTCTAGGCGCCGCAAATCTTAGTCTTCATATTAAAATAGTTCATAAAGGAATTCGAGCCTATTCATGCACATATTGTGATAGATCTTTTGGGAAGCCAGGAACATTGAAACACCACATTATgacacatactggggagaaaccaCATGAATGTAAATCTTGTGGGAAACGTTTCATACAGGGAACTGCTCTTAAGATGCATTTAAAACGAAATGCCAAATATAACGAAGAATTAGACGATGATGATTTAGATTCTACTGCTGAGTTAAGTAacaattttaaagaagaaataaGCCAGACAGAAGATGAATTAGATCATACCAAATCCAGTTCTAATTTATCGGAATCCAAAGAAAAgcttaaaagaaataatatcaaCACGAATCCCAATAGTACAAAATCACAGAAAATGTTAAATTGTAAATTATGTACAAAGAAGTTTTTTAAACAATCACGTCTTAATGCTCATATTAGAACACATGAAGGGTTGAAGCCATATCCTTGCAGCGACTGTGACAAACAGTTTAATAAAAACCATGGATTAGCTGTTCATTATGAAGTCGTTCACAGTAATTCGAATAAACGTTATTGTTGTTCGGAGCCCGGCTGTGATAAAGCGTACAGAACAAAACGGGTCTTAGATGGTCATATTAGAAGTGTACATGTTTTGAAAGGTAGAAAAACTCCAACATCATGTATTTGTGAGACATGTGGGAAAATTTTCGCGAATAAAgcgaatttaaaaAGTCATTCATACACTCACACTAAAGAATTACCATTCAAATGTACTAAATGCCCAAAACGATTTCCATATCAATACAATTTGAAGGAACATTGTTTGCGTCACGATGGAATCAAAAATTTCGTTTGCCTTCATTGCGGcttaaaaaaaacgacgaaaaagGAATtgaaagttcatttaaattatcaTACAAAAGAGAAAGTCTATTATTGCCCTCATTGTTCTTCATCCTTCCTAAACACTGGAAATCTTAGTCTTCATATTAAAATAGTTCATAAAGGAATTCGCGCGTATTCATGTACACACTGTGATAGATCTTTTGGGAAACCAGATACTTTGAAACACCACATTATgacacatactggggagaaaccaCATGAATGTAAATCTTGTGGGAAACGTTTTATACAGGGAACTGCTCTTAAGATGCATTTAAAACGAAATGCCAAATGTAAATCAGATAATGCTATAAactga
- Protein Sequence
- MDLHRFSTEHICRVCLKELENNKFGIFDIQSLQKMFFACTSMEIVEDDVHTKFLCEICYNTIEKFYKFREMCKASYNKLQNMLKVHNEGKSKKTSDGLTNFLKVELKYDQKEGNNLDFTSEFVIKEESSDNKNEYIDGNNSNISESERDCTENNQQTASEGAKPHKMLSCEFCTQKFLKESRLHAHMRTHKGLKPYPCNECDKQFNKKHGLAVHYEVAHSNSNKLYHCSEPDCDKAYRTKRVLDSHFRKIHVLKGSTSHTECVCDACGKVFANKANLRKHSYIHTGELPFKCSKCPKRFTTRYKLKEHCMRHDGIKNFVCPHCGLKKTTNKELKVHLNYHTKEKVHYCPHCSSSFLGAANLSLHIKIVHKGIRAYSCTYCDRSFGKPGTLKHHIMTHTGEKPHECKSCGKRFIQGTALKMHLKRNAKYNEELDDDDLDSTAELSNNFKEEISQTEDELDHTKSSSNLSESKEKLKRNNINTNPNSTKSQKMLNCKLCTKKFFKQSRLNAHIRTHEGLKPYPCSDCDKQFNKNHGLAVHYEVVHSNSNKRYCCSEPGCDKAYRTKRVLDGHIRSVHVLKGRKTPTSCICETCGKIFANKANLKSHSYTHTKELPFKCTKCPKRFPYQYNLKEHCLRHDGIKNFVCLHCGLKKTTKKELKVHLNYHTKEKVYYCPHCSSSFLNTGNLSLHIKIVHKGIRAYSCTHCDRSFGKPDTLKHHIMTHTGEKPHECKSCGKRFIQGTALKMHLKRNAKCKSDNAIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -