Xate009972.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730480.1:10412572-10414680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.42 31 6.2 1.3 1 23 61 83 61 83 0.95 2 18 0.015 1.1 10.7 3.1 1 23 110 132 110 132 0.98 3 18 0.00036 0.026 15.8 3.0 1 23 142 164 142 164 0.98 4 18 1.5e-05 0.0011 20.1 2.9 1 23 170 192 170 192 0.99 5 18 4.1e-07 3e-05 25.1 0.7 1 23 198 220 198 220 0.97 6 18 0.011 0.83 11.1 4.3 1 23 226 248 226 248 0.98 7 18 0.092 6.6 8.2 0.4 1 23 296 318 296 318 0.96 8 18 0.004 0.29 12.5 5.3 1 23 345 367 345 367 0.98 9 18 4.3e-05 0.0031 18.7 1.1 1 23 377 399 377 399 0.98 10 18 4.1e-05 0.003 18.8 4.7 1 23 405 427 405 427 0.99 11 18 0.00028 0.02 16.2 0.5 1 23 434 456 434 456 0.98 12 18 0.42 30 6.2 1.7 1 23 477 499 477 499 0.96 13 18 0.0058 0.42 12.0 5.1 1 23 526 548 526 548 0.98 14 18 0.00011 0.0083 17.4 0.5 1 23 558 580 558 580 0.98 15 18 0.006 0.44 12.0 2.6 1 23 586 608 586 608 0.98 16 18 0.02 1.4 10.4 0.3 1 23 615 637 615 637 0.97 17 18 0.0076 0.55 11.6 0.3 5 20 646 661 644 664 0.92 18 18 7.2e-06 0.00052 21.2 1.6 1 23 670 692 670 692 0.98
Sequence Information
- Coding Sequence
- ATGTTGGAAACGAAAACTAGTTTATTTGCTGAAGAAAATCAATCGGAATTCATTTTAACCGAAGTtgaaattaaacaagaaccagaCTTGATTATAGAAGATGaatttgaaactgaaaaaattcgcAAATACTTACACAAAAACGATATAACTGAAGATGATCGAATGAATTTAGTTTGGCATGATTGTGAAATATGTGAAGAACGTTTCTTAAACATCGAAGATTTATCATTGCACCACCAAAGTCATCAAGATTCTAAAGAATCTTCAACGAACATTTCGATTGAGAATGAATCGCCTCCTAAAAACATTTATGTAAAGAAAGAATTTCAATGCGATCGTTGTAATTGTTCATATGATCAGGAAGCCAGGCTAAAAGAACATTATCGATTGCATCGCGGTAAGCTTTATCCTAAAACGATACACAAATGTGCTCAGTGCGATTTAGCATTTGCACATAGAAATGATTATGAAATGCATATGAAAACCCATCCAGGCGAAAAACCATACAAATGTGATCTTTGCGATCGTTCATTTTATGTAAACCATAATCTTGTAGTACATTACCGAAAACATACCGGTGAACGGCCTTATAAATGTCATATCTGTGATAAagcatttgcgggaagtagcagtttaaaaaaacatatagaggCACATGGTGCcagaaaaccatttaaatgctcTCGATGCACGTGTTCATTTGATTCAAAAATTGGCCTCTCAAGACATTATCAATTGCATATTAAAACTTCAACGAATATTTCGATTGGAATTAAACAGGAACCAGAATTGAGTATAGAAGATGAACTTCAAACTGAAAATGTTCGTGAATACTTCGATAAGGACGATATAACTGAAGATGATCGAATGAATTTAGTTTGGCATGATTGTGAAATATGTGAAGAACGTTTCTTAAACATCGAAGATTTATCATTGCATCTCAAAAGTCATCGAAATTCTAAAGAATCTTCAACGAACATTTCGATTGAGAATGAATCGCGCGCTAAAAGCATTTATGTAAAGAAAGAATTTCAATGCGATCGTTGCGATTGTTCATATGATCAGAAAACCAAGCTAAAAGAACATTATCAACGGCATTTCGGTAAACGTTATATTAACTGGATATATTCATGCGTCTACTGCGATGAAGAATTTACAAgtaaaagaaattatgaaaatcatGTAACAACACATACTGGCGAAAAACCATACAAATGTGAACTTTGTGATCGTTCATATTGTggaaaacgaaattttttgaaacataTGCAAACGCATGCTGATGATAGAGAAACATTTGAATGTGAACTTTGTCAACGCCCATTTCGTAGCAGACGAGCTTTATCATTACATTCACGAATACATGACGTTGAATACATGTATACAGAGGATATACCTGAAGATGATGGAATGGATTTAGTTTGGCATAATTGTGAAATATGTGAAGAACGTTTCTTAAACATCGAAGATTTATCATTGCACCACCAAAGTCATCAAGATTCTAAAGAATCTGCAACGAACATTTCGATTGAGAATGAATCGCGCCCTAAAaacatttatgtaaaaaaagaatttcaatgcGATCATTGTAATTGTTCATATGATCAGGAAAGCAGGTTAATGGAACATTATCGATTGCATCGCGGTAAACTTTATAATAAACCGATACACAAATGTCCTCAGTGCGATGCAGCATTTACATATAGAATTGATTATGAAATGCATATGGCAACCCATCCAGgcgaaaaaccattcaaatgtgatcttTGTGATCGTTCATATTATCTAAAACTAAGTCTATTAAGGCATTTCCAAAAGCATACTGATGATAGAAAACCATTTCAATGCGAACCTTGTCAACGTCCATTTCGTACCAGACTAGCTTTATTATTACATTCACGAATACATAACAGTGATAAGGTTTTCAGATGTTATTGTGACAAACCTTTTGAACGAAATGATTCTCTTCTAAAGCATATTTGGATTCATACTGGAGAAATCCCATTTCAATGTCCTTATTGTGCTAAGACGTTTTGTCAAGAAAATCTCCTTCAAATCCATATAAATAGTCATATTAATGGAGAATCATTTAAAACTGATCACTGA
- Protein Sequence
- MLETKTSLFAEENQSEFILTEVEIKQEPDLIIEDEFETEKIRKYLHKNDITEDDRMNLVWHDCEICEERFLNIEDLSLHHQSHQDSKESSTNISIENESPPKNIYVKKEFQCDRCNCSYDQEARLKEHYRLHRGKLYPKTIHKCAQCDLAFAHRNDYEMHMKTHPGEKPYKCDLCDRSFYVNHNLVVHYRKHTGERPYKCHICDKAFAGSSSLKKHIEAHGARKPFKCSRCTCSFDSKIGLSRHYQLHIKTSTNISIGIKQEPELSIEDELQTENVREYFDKDDITEDDRMNLVWHDCEICEERFLNIEDLSLHLKSHRNSKESSTNISIENESRAKSIYVKKEFQCDRCDCSYDQKTKLKEHYQRHFGKRYINWIYSCVYCDEEFTSKRNYENHVTTHTGEKPYKCELCDRSYCGKRNFLKHMQTHADDRETFECELCQRPFRSRRALSLHSRIHDVEYMYTEDIPEDDGMDLVWHNCEICEERFLNIEDLSLHHQSHQDSKESATNISIENESRPKNIYVKKEFQCDHCNCSYDQESRLMEHYRLHRGKLYNKPIHKCPQCDAAFTYRIDYEMHMATHPGEKPFKCDLCDRSYYLKLSLLRHFQKHTDDRKPFQCEPCQRPFRTRLALLLHSRIHNSDKVFRCYCDKPFERNDSLLKHIWIHTGEIPFQCPYCAKTFCQENLLQIHINSHINGESFKTDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -