Xate017165.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730481.1:43076405-43078513[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.9e-05 0.0014 19.8 2.8 2 23 241 262 240 262 0.92
2 12 7.8e-07 5.7e-05 24.2 0.3 1 23 268 290 268 290 0.98
3 12 6.5e-05 0.0047 18.1 1.8 1 23 296 318 296 318 0.98
4 12 1.3e-06 9.4e-05 23.5 1.1 1 23 324 347 324 347 0.97
5 12 0.00063 0.046 15.1 3.3 1 23 355 377 355 377 0.98
6 12 7.8e-05 0.0057 17.9 5.7 1 23 385 407 385 407 0.98
7 12 1.8e-07 1.3e-05 26.2 0.9 1 23 413 435 413 435 0.99
8 12 3.7e-05 0.0027 18.9 4.5 1 23 441 463 441 463 0.99
9 12 6.1e-05 0.0044 18.2 1.7 1 23 471 493 471 493 0.98
10 12 0.00013 0.0092 17.2 1.0 1 23 501 524 501 524 0.93
11 12 0.01 0.75 11.2 0.1 2 23 533 555 533 555 0.91
12 12 0.00037 0.027 15.8 1.4 2 23 561 582 561 582 0.96

Sequence Information

Coding Sequence
ATGAACTTAAAATTGGATATTAAAGTTTGTCGGGTTTGTTTAAAGTCCGATCGTGGGATTTCTTTATACAGTGAAATTAATTTGGCTGAGAAATTTCAATATAGTACGCAAATTAAGatAAAACCGGATGATGGCATGCCAACAATACTTTGTGAACGTTGTTTTACACGATTAAAAATTGCTTATGAATTTAAACGGCAAAGTATTATATCAGATCAACATTTGCGTACTTTTATATCAAAAGTtaataatcaatttaaagaagtcGCGAATACAACAATATCTGATAATAAAGAAGTCATGACAATAAACGAAGATGAAATGGAAATTCTTATAGAAGAGGGTTATAAGCCGGACATGAGAATAGAATCGTGTGATGCTATTACAAAAATTGAAGATATCGATCACGTAGAAGAACAACTTGCTGAACATATCGAAGATAATTTCAATGGTTTAATTCAAGAAGATGATTGCAGTGGAAATTTTACCGATGAAAATTCaaatgataatgataataataataatgatgaagaAGATGATGAAGAAATACAtcttgaagaagaagaagatagTATAAATAGTGATGCACAAATTGATGATAATGGTGAAAATTCTGAAAATGTTCTATTAGAAGTTAACACATTACCATCAGAAGATTATATTGTTCCCGAAATAAAATCAGATCCATTggaaaagataaaaaatgaaaatcgttCACATATTTGTATAAAATGTGATAAAGATTTTAGTACTAAAACGAATCTAATGCGACATATGCTTACACATGATGGTGTAAAACCATTTCAATGTAACATTTGTGGAAATGGTTTCACTCAGAATGGTTCACTTAAACAACATATGCTAATACATACTGGTGAAAGACCGCATAAATGTGATGTATGCGGACGTGGTTTTACACAAGCAAAATCATTAGTTTTTCATATGAGAcggcatactggtgaaaaaccttTTACATGTGAAAAATGCGGTTTAACATTTCGACAAAAAGATGGATTAAAGcGTCATGTATTAATGAAACATTCTGGTGGCGCAGCCGATATACATGTTTGTTCGATATGTCAAAGAGTTTTACATTCGAAATATTCTTTAGCCTTACATATGAGAAAACATTTAGGAAACGAAGATTTAAATCATAAATGTGAAATATGTGAGAAAACATTTTCATCGAAAACATCTTTAGATAATCATCATAGACAGCATACCGGTGAAAAACCTTTTAAATGTGATTCATGTGGAAAAGAATTTTCACGTAAAGGTTCACTTATATCACATATTAAAACACATTTAGATGTTAAACCATTTCGTTGTCCAAAATGTGAAAAAGGTTTCATTCATAAACATCAAGTAATGTCTCATATGCAAACGCATAAAAATCATTCAGCAAAAAGTTTTCAATGTGGAAAATGTTATAAAAGTTTCGCTATAAAACGAAATCTTCTTCAACATCTAAGAAATCATAATATGGAAAGTATGACAATATATAAATGTGATGATTGTAATATTGCGTTCAATACAAAACGTGGATTAAAGTTACATCGTTTTAATGAACATAAGGAAACCGTTTCCGATTTGAATGAATGTGATATTTGTCATATACCTTTTGTTTCTGTAAATGATCTTAATCAACATACAATTGCGGTTCATGATAGTATCGATGAACGATGCGAAATTTGTGATCATCAGTTTACATCGAAAAAGCTTTTAGAAGATCATTTATTAGAGCATGAACTTATGACGGTGAATTGA
Protein Sequence
MNLKLDIKVCRVCLKSDRGISLYSEINLAEKFQYSTQIKIKPDDGMPTILCERCFTRLKIAYEFKRQSIISDQHLRTFISKVNNQFKEVANTTISDNKEVMTINEDEMEILIEEGYKPDMRIESCDAITKIEDIDHVEEQLAEHIEDNFNGLIQEDDCSGNFTDENSNDNDNNNNDEEDDEEIHLEEEEDSINSDAQIDDNGENSENVLLEVNTLPSEDYIVPEIKSDPLEKIKNENRSHICIKCDKDFSTKTNLMRHMLTHDGVKPFQCNICGNGFTQNGSLKQHMLIHTGERPHKCDVCGRGFTQAKSLVFHMRRHTGEKPFTCEKCGLTFRQKDGLKRHVLMKHSGGAADIHVCSICQRVLHSKYSLALHMRKHLGNEDLNHKCEICEKTFSSKTSLDNHHRQHTGEKPFKCDSCGKEFSRKGSLISHIKTHLDVKPFRCPKCEKGFIHKHQVMSHMQTHKNHSAKSFQCGKCYKSFAIKRNLLQHLRNHNMESMTIYKCDDCNIAFNTKRGLKLHRFNEHKETVSDLNECDICHIPFVSVNDLNQHTIAVHDSIDERCEICDHQFTSKKLLEDHLLEHELMTVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-