Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730485.1:19242566-19244579[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.096 7 8.2 0.6 1 19 184 202 184 203 0.96

2 12 0.00031 0.023 16.0 2.2 2 23 227 249 226 249 0.96

3 12 0.036 2.6 9.5 0.5 1 21 298 318 298 319 0.94

4 12 6.6e-07 4.8e-05 24.4 1.3 1 23 327 349 327 349 0.98

5 12 9.6e-07 7e-05 23.9 0.6 2 23 355 377 354 377 0.96

6 12 8.1e-06 0.00059 21.0 0.3 2 23 384 405 383 405 0.98

7 12 1.2e-05 0.00088 20.5 0.8 1 23 411 433 411 433 0.95

8 12 2.3e-06 0.00016 22.7 0.4 1 23 439 461 439 461 0.99

9 12 9.3e-06 0.00067 20.8 0.5 1 23 467 489 467 489 0.98

10 12 0.0002 0.014 16.6 0.6 1 23 495 517 495 517 0.98

11 12 0.00073 0.053 14.9 2.1 1 23 523 545 523 545 0.98

12 12 1.9e-05 0.0014 19.8 0.2 1 23 551 573 551 573 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.096	7	8.2	0.6	1	19	184	202	184	203	0.96
2	12	0.00031	0.023	16.0	2.2	2	23	227	249	226	249	0.96
3	12	0.036	2.6	9.5	0.5	1	21	298	318	298	319	0.94
4	12	6.6e-07	4.8e-05	24.4	1.3	1	23	327	349	327	349	0.98
5	12	9.6e-07	7e-05	23.9	0.6	2	23	355	377	354	377	0.96
6	12	8.1e-06	0.00059	21.0	0.3	2	23	384	405	383	405	0.98
7	12	1.2e-05	0.00088	20.5	0.8	1	23	411	433	411	433	0.95
8	12	2.3e-06	0.00016	22.7	0.4	1	23	439	461	439	461	0.99
9	12	9.3e-06	0.00067	20.8	0.5	1	23	467	489	467	489	0.98
10	12	0.0002	0.014	16.6	0.6	1	23	495	517	495	517	0.98
11	12	0.00073	0.053	14.9	2.1	1	23	523	545	523	545	0.98
12	12	1.9e-05	0.0014	19.8	0.2	1	23	551	573	551	573	0.97

Sequence Information

Coding Sequence: ATGTCGGAAGCATTTAATAATGTTTGTAGGACATGTTTGTCGTCGGGGAGTGCACTACTGTCTTTATTggagaataatattgttgagGCTTCTTCTAGTATCGCAGATATGTTAAAATCATTTACTTCGGTGATTatttccGATAGCGATGGATTACCATCAAAGGTTTGTTTATCCTGTATCAGTGAAATAAATAGTGCATAtgcatttaaaattaaatgtgaaaACTCGGAATTAACTTTAAAGCAATATTTGAATCAACAAAATggagaaataaaaattacaaaatttgaaaaagcagaagaaaatgATATAGAAATGATTGAAACACTAGAGGAACTTAGTCCTAGTAAAGACCAAACTGAAGatgatgaaaaattatttactgAAGAAGGTGCATCGGAGGAAATTTCCAATGAAGACAAAAATTGTGAAACGAATGTTATTGAGGTTCCAAAAAAGGAATATCATGAAGATGATGATAGTTCCGAAAAACAAGAAGTATTTGTTGAACAAAATGTAGAAACTCCAATTGAAAATGACATATTATTTGAATGTAGAGCGTGTggtaaacaatttaaaatcaaagaaaaatttactgCTCATTCAGTAGAATGTTGTATgaacgagaaaaaaaatatggaatataaagaaaaaaatcgtcATAAAGAACCAATCCAATGTCCACATTGTCCAGTTGATTTTGTACATAAGAAAAATCTCGATAAACATGTTCAAAAATATCATCGAGATTTAGgagaaaaagtaaaaatacaAAGTGATGAAGAGAAACAATCAGAGAATGAAGATTCGGATAGTGCCGGCAGTAATGTTGATAATATTCAAGCAAATGTTATTAAACATGAAATTGTTGAATTGCCTGAAAGTAATTTTCATTGTAAACATTGTAATGCTGGTTTCGCCAAAGAAATATCACTTGTTtatcatattaaaataaataaatgtactGAAAAACAGTTTCAATGTGATATTTGTAAACGTGTTTTTATAAATAGGAAGAATTTAAGCCGTCATATAAAATTGCATTCAAAACAAGTGCTGACGTGTAGCAAGTGTCCAAGGACATTTTCACGACAAGATAAATTAACAGAGCATATGAACGTTGCACATCGTggtattattaaaaatcaatgtCCAATTTGTAGTAaagTTTTTACAATGGTTTCAACACTTAAAGATCATTTACGTATTCATAATGGTGAGAAACCATTTTTATGTTCAATATGTGGCAAAGGATTTAGTCAAGGAACAAACTTGAAACAGCATACGATGCGTCATACAAATacaaaaccatttaaatgtaatATATGTGATTACACTTCCGTCAGTAAAGGAGAATTAAATGCCCATATTCGTAAACATACTGGAGATCATCCATTTGTTTGTGATACTTGCGGTTCTGGCTTTACAACATCAAGTTCATTAGTTAAACATAAACGTATTCATACCGGTGAACGTCCATATGCATGTGATTTTTGTCCAATGCGTTTTACAGCATTGGGAACATTAAAAAATCACCGACGGACGCACACCGGTGAGAAACCGTTTGTTTGTAAATATTGTGAACGTGGTTTTGCACAAAAAAGTGATTGCGTATCACATGttagaacgcatactggtgaacgTCCGTACATGTGTCCCATATGCGGTTTATCTTTTCAACAATCTGGCACATTGAAAAGCCACAGCCAGATTCATGCACGAGAATCTAAAGCTCCGAAACGTAAAAAATCTGATGATAAttcaaatacaacaaattcATCAATCGAGAAGGCCGACACTGAAAATAATACAACATCTGAATCGGAGTTATTTACTACACAAGATGAGATTTTGCCGTAa
Protein Sequence: MSEAFNNVCRTCLSSGSALLSLLENNIVEASSSIADMLKSFTSVIISDSDGLPSKVCLSCISEINSAYAFKIKCENSELTLKQYLNQQNGEIKITKFEKAEENDIEMIETLEELSPSKDQTEDDEKLFTEEGASEEISNEDKNCETNVIEVPKKEYHEDDDSSEKQEVFVEQNVETPIENDILFECRACGKQFKIKEKFTAHSVECCMNEKKNMEYKEKNRHKEPIQCPHCPVDFVHKKNLDKHVQKYHRDLGEKVKIQSDEEKQSENEDSDSAGSNVDNIQANVIKHEIVELPESNFHCKHCNAGFAKEISLVYHIKINKCTEKQFQCDICKRVFINRKNLSRHIKLHSKQVLTCSKCPRTFSRQDKLTEHMNVAHRGIIKNQCPICSKVFTMVSTLKDHLRIHNGEKPFLCSICGKGFSQGTNLKQHTMRHTNTKPFKCNICDYTSVSKGELNAHIRKHTGDHPFVCDTCGSGFTTSSSLVKHKRIHTGERPYACDFCPMRFTALGTLKNHRRTHTGEKPFVCKYCERGFAQKSDCVSHVRTHTGERPYMCPICGLSFQQSGTLKSHSQIHARESKAPKRKKSDDNSNTTNSSIEKADTENNTTSESELFTTQDEILP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -