Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730485.1:19568689-19571722[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.088 6.4 8.3 2.8 1 20 209 228 209 230 0.93

2 15 2.8 2e+02 3.6 0.1 5 23 239 258 235 258 0.91

3 15 0.00041 0.03 15.6 0.4 1 23 262 284 262 284 0.94

4 15 0.0035 0.25 12.7 4.2 1 23 290 313 290 313 0.94

5 15 0.002 0.15 13.4 2.0 1 23 318 340 318 340 0.98

6 15 0.0056 0.4 12.1 6.1 1 23 346 368 346 368 0.98

7 15 6.7e-06 0.00048 21.3 0.9 1 23 374 396 374 396 0.95

8 15 3.5e-05 0.0026 19.0 3.3 1 23 402 424 402 424 0.97

9 15 7.2e-07 5.2e-05 24.3 1.5 1 23 430 452 430 452 0.99

10 15 0.00014 0.01 17.1 1.8 1 21 458 478 458 481 0.90

11 15 0.00071 0.052 14.9 1.3 1 23 516 539 516 539 0.97

12 15 7.1e-07 5.2e-05 24.3 1.6 1 23 545 568 545 568 0.96

13 15 1.9e-05 0.0014 19.8 0.5 1 23 574 596 574 596 0.99

14 15 2.1e-05 0.0015 19.7 0.6 1 23 602 624 602 624 0.98

15 15 0.00078 0.057 14.8 0.4 1 23 630 652 630 652 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.088	6.4	8.3	2.8	1	20	209	228	209	230	0.93
2	15	2.8	2e+02	3.6	0.1	5	23	239	258	235	258	0.91
3	15	0.00041	0.03	15.6	0.4	1	23	262	284	262	284	0.94
4	15	0.0035	0.25	12.7	4.2	1	23	290	313	290	313	0.94
5	15	0.002	0.15	13.4	2.0	1	23	318	340	318	340	0.98
6	15	0.0056	0.4	12.1	6.1	1	23	346	368	346	368	0.98
7	15	6.7e-06	0.00048	21.3	0.9	1	23	374	396	374	396	0.95
8	15	3.5e-05	0.0026	19.0	3.3	1	23	402	424	402	424	0.97
9	15	7.2e-07	5.2e-05	24.3	1.5	1	23	430	452	430	452	0.99
10	15	0.00014	0.01	17.1	1.8	1	21	458	478	458	481	0.90
11	15	0.00071	0.052	14.9	1.3	1	23	516	539	516	539	0.97
12	15	7.1e-07	5.2e-05	24.3	1.6	1	23	545	568	545	568	0.96
13	15	1.9e-05	0.0014	19.8	0.5	1	23	574	596	574	596	0.99
14	15	2.1e-05	0.0015	19.7	0.6	1	23	602	624	602	624	0.98
15	15	0.00078	0.057	14.8	0.4	1	23	630	652	630	652	0.98

Sequence Information

Coding Sequence: aTGAATATTGAACAAGACGATTCAAAATTTGGAATCCATCAACTTTGTCGAGGATGTGCTAGAGTTGGCGATGAAACAACACTCTTCCCTTTATTTGAAGATTGGAATAGAAAGAAAGACACTTTATTTCAGGAAGATATTTCCTTAAAAACCAAACCAATTGATTTAATACGAAAATTggatttcattaatttaaaggttaaaGAAAACGATGGACTTCcacaaaaaatttgtaatttttgtatTGCACATTTATCAGACATCGAGAATTTTCGAAAAGCATGTGAAAaatcacaaattattttaaaggaaTATTTTTTAGACCATTTGAATAAAAAGGATGACAGCGACGAAAAAGAATATGATGAACTggaatatttaaatgaatatgaAGATCaaataaAAGACATCTGTGATTATGAAGAGGATCATTCGAATGATAGTAAAAATGATTACGAACATTGTGTAGAAGATGTAGAAGAAAATACTGTTTCATCTCTTGATTATGACAATATCCAAAATTCTGAAGATCCCAAAAATATATTAGTTATACGCAGCAATGAAAATGAGGCGAATAAAGAAgAACCGGACAATACACTTGAAacaatcgaaaaaacaatattacataGATGTGATGACTGTAAAGAGTATTTTCCCAATGAATTCCTATTACAAGAACATAAATGCAATTTAAGTGCTAATGAAGGACAACAACATTGTACGAATGATTATGTTAACAAACAGGAATTGGAAGAGCACATAACAAATGTACATAATGAATCTCATATTTGTGAAATTTGTGAAAGAAGTTTTACAAAtgctatcaaattaaaaattcattcagaAGTTCATAATGCTAAAGATACGTTTAAATGTGATATTTGTAATCAAGGTTTTCGAACTCGACATTATGTTAGTAGACACAAAAAGTTTGTTCATGAGAGAGGTGATTTTGAGTGCGAAACGTGTTCGATGAAATTCGAAAGTTCAATGAAATTAAGATATCACTTGAAATCGCATGATCCAAGTAAACAATTTCATTGTAAATATTGTGAGAAATCATTTTTGCAAAGTACTCATTTATCAAATCACGAACGAATACACACCGGCTTAAAACCATTCCTTTGTAATGTTTGTGGAAAAGgTTTCAAACAAGATTACTATTTAAAAACACATTTAAGAATTCATAGTGGAGATAAACCACATGTTTGTAACATTTGTGGAAAAGATTTTAATCATCGGATCTCTTACACAACACATATGCAAATTCATGAAGGAATTGTACCATTTCAATGTGAAATTTGTGGTAAAGGTTTTCAAAAAAAGTTCACATTAAACAATCATATACGAACTCATACCGGTGAAAAACCATTTGAATGTGATCTATGCGATAAGAGTTTTGTACAACAGCAACaattaaaatatcataaatttttcgCACATGAAAAGAAAACAGAGAATTCTAAAAATAATGATGATACGGAAGAAAtcaataatgatgatgatgataataaaaatgatgatgGAATTGAAACTAGAAGTGGTTATAATTGTCCACTTTGTTCGAAAGTATTCatattatcattatcattaacATCTCATATAAATCGTTGTCATACGGGCGAACGGAAATACAGTTGTAACGAATGTGGCTACTCATTTAAAAGAGCAACGCATTTACAATCGCATATTGATCGTGTTCATTTAAAACATCGACCATATAAATGTGATATTTGTAATAAATCATTTGCACAAGCTGGTGAACGTAATAGTCATGAAAAAACTCATACAAataAAAGATTATATGAGTGTAAAATTTGtaacaaaacatttaaaaatgaaaaatctatAATTGCACATGAACGGCTTCATACTGGAGAAAAGCCTTTCGAATGCGGAATTTGTTCAATGGGTTTTGCAAGTTATAGTTCACTTTATACTCATACGACCACTCATTCTGAAGCCGAACGAAAAGAAGAACGTGATAAAAAACTTACAGAGTTACAAAATTTAATCGTTGTTGATGAAATTGAAGTTGAAGAAATTAACTTAGATACAAATGATAGCTTGAGCAATTATGAAACCAAATGGTCTTAG
Protein Sequence: MNIEQDDSKFGIHQLCRGCARVGDETTLFPLFEDWNRKKDTLFQEDISLKTKPIDLIRKLDFINLKVKENDGLPQKICNFCIAHLSDIENFRKACEKSQIILKEYFLDHLNKKDDSDEKEYDELEYLNEYEDQIKDICDYEEDHSNDSKNDYEHCVEDVEENTVSSLDYDNIQNSEDPKNILVIRSNENEANKEEPDNTLETIEKTILHRCDDCKEYFPNEFLLQEHKCNLSANEGQQHCTNDYVNKQELEEHITNVHNESHICEICERSFTNAIKLKIHSEVHNAKDTFKCDICNQGFRTRHYVSRHKKFVHERGDFECETCSMKFESSMKLRYHLKSHDPSKQFHCKYCEKSFLQSTHLSNHERIHTGLKPFLCNVCGKGFKQDYYLKTHLRIHSGDKPHVCNICGKDFNHRISYTTHMQIHEGIVPFQCEICGKGFQKKFTLNNHIRTHTGEKPFECDLCDKSFVQQQQLKYHKFFAHEKKTENSKNNDDTEEINNDDDDNKNDDGIETRSGYNCPLCSKVFILSLSLTSHINRCHTGERKYSCNECGYSFKRATHLQSHIDRVHLKHRPYKCDICNKSFAQAGERNSHEKTHTNKRLYECKICNKTFKNEKSIIAHERLHTGEKPFECGICSMGFASYSSLYTHTTTHSEAERKEERDKKLTELQNLIVVDEIEVEEINLDTNDSLSNYETKWS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -