Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730478.1:64446325-64451607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.1e-06 0.00045 21.4 4.2 1 23 251 273 251 273 0.99

2 13 0.017 1.2 10.6 2.1 1 21 273 293 273 295 0.92

3 13 0.0018 0.13 13.6 0.3 1 23 308 330 308 330 0.96

4 13 0.00021 0.015 16.6 3.8 1 23 336 358 336 358 0.98

5 13 8.7e-06 0.00063 20.9 0.5 1 23 364 386 364 386 0.98

6 13 0.00017 0.012 16.8 3.9 1 23 395 417 395 417 0.97

7 13 8.1e-07 5.9e-05 24.1 1.1 1 23 423 445 423 445 0.99

8 13 7.2e-07 5.2e-05 24.3 4.2 1 23 451 473 451 473 0.98

9 13 1.7e-07 1.2e-05 26.3 1.4 1 23 479 501 479 501 0.99

10 13 7.9e-05 0.0057 17.9 2.3 1 23 507 529 507 529 0.99

11 13 5.7e-06 0.00041 21.5 0.9 1 23 535 556 535 556 0.98

12 13 0.0006 0.043 15.1 0.4 1 23 562 584 562 584 0.98

13 13 1.9 1.3e+02 4.1 4.1 1 23 590 612 590 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.1e-06	0.00045	21.4	4.2	1	23	251	273	251	273	0.99
2	13	0.017	1.2	10.6	2.1	1	21	273	293	273	295	0.92
3	13	0.0018	0.13	13.6	0.3	1	23	308	330	308	330	0.96
4	13	0.00021	0.015	16.6	3.8	1	23	336	358	336	358	0.98
5	13	8.7e-06	0.00063	20.9	0.5	1	23	364	386	364	386	0.98
6	13	0.00017	0.012	16.8	3.9	1	23	395	417	395	417	0.97
7	13	8.1e-07	5.9e-05	24.1	1.1	1	23	423	445	423	445	0.99
8	13	7.2e-07	5.2e-05	24.3	4.2	1	23	451	473	451	473	0.98
9	13	1.7e-07	1.2e-05	26.3	1.4	1	23	479	501	479	501	0.99
10	13	7.9e-05	0.0057	17.9	2.3	1	23	507	529	507	529	0.99
11	13	5.7e-06	0.00041	21.5	0.9	1	23	535	556	535	556	0.98
12	13	0.0006	0.043	15.1	0.4	1	23	562	584	562	584	0.98
13	13	1.9	1.3e+02	4.1	4.1	1	23	590	612	590	612	0.96

Sequence Information

Coding Sequence: atgtcgaaaaaatcaattgaaaatggTGTTAATAATGTCATAATAAATGTGGATTTAAAAAGTTTGGATTTCGAAAGCGATGTATCGAGCGACATGAATCATGGGATTGAAACTCAAGTTCTTGATCGTCTCGTTACTGGTGATGATGATTTAACCGAGAAGTTGGAAAAAACTTGTAGATGTTGTTTAGCTGAGAATGATGAtttaaaaccgatttttgaTCCGGACGATTGTATTTCATCAATGATTGTTTTGTTGACATCCGTTCAGTTATCGCAAAATGATTGTCTTCCAACTAATATTTGCCTGGAATGTATTGAACaattaataaaatgtataaattttaaacaacaAGTTGAGACTGCCGATATGACTCTGAGGCATTATGTTACCGAGggATATTTTCAAGGAATGACGCTTCAAAAAGTTGATATTGAAGAATTAACAAAGAAATTaactgaATCACAAGAATTTGAATCAAGTGATTTAAAGAAGCCTTCATCAAACGGTGATCAAAATTATAACTTATCTTCGGTAAAGGAATCAGAAAATTGTATTGAAAACGAAAATATGATAAATGAAACACAAGAAAATGATATAACATCATCAAATCAAGAGGACGAAGAAATTGAATCaaatgataatgataataatgtttttttagaaaattatgaaaCCGAGTTAATTAAACAAAGTCATGATATTAATTCTCCAACAATTGTTTcaatgaagaaaagaaaacgaaaacaataCGAATGTACAATTTGTAATAAAACGTTTATtaatcaaaaattgtattttcatcATATGAAATCACATATATGTAATGTCTGTAATCGAAGTTTTAAAACAACAGAAATATTAAACAATCACATTAAATGCCATCGACAGGAATTAACTGCATCTAATATCGATGATAAATTTAAATGTAACGAATGTGATATGATTTTTacatttgaaaatgatttatataTTCATGGTTCGATTCATGTTGATAGTAAGAAATTTATTTGTCGAAAATGCGATAAAGAATTTCCAAATTGTTTGAAACTAAAACGGCATGTTCGGACACATTTTGAAGATAAACCATATAAATGCCCACAGTGTGGACGTGGTTTTCCAGAGATGAGTTCATTAACACGACATTTTCGTTTGCATTCAGGCGAAATACGTGAAAAGAAACATGTTTGTACGGATTGTGGAAAGCGTTATTATGATTTACATTCATTATCGGTTCACAGAAGAAATCATACCGGAGAAAAACCATATGTTTGTGAATTTTGTGATAAACGTTTTATTGATTCGCGTCTTTTAAATTCACACATGAAAACTCATATGGTTGAAAAATTATACGCTTGTGATAAATGTAATCGAAGATTTACTCATCAAAGTACTTTAACGACACATATTCGAACTCATACGGGAGAAAAACCATATGTTTGTGAATTTTGTAGTAAAACTTTTATACAATCATCAAATTTAAGTTTACATATGAGAACACATTCCGGAATTAAACCgtataaatgtaatttttgttcaaGTGCATTTGCCAGTTCATCAACATTAACATCACATAAACGAACGCACACGGGTGAGAAACCATATAGTTGTTCAGAATGTGGTAAAACATTTGCACGTTTCGATTTAAAAGCACATATGCGTACACATACCGGTGAAAAACCATTCGAGTGTTTAATATGTTTGAAGCGCTTCATAACAGGCGGACAATTGAATCAACATAAACGTATTCATAATCGTGAAAAAGTATTCTCATGTGATTGCTGTAATAAATGTTGGTCAactgaaattgaattaaaagagCATCTACAAAAACATTCAGATGATAATGAGAAATTAGATACAAATTATTTAGAACAACAACGAGAACATACTCTGCCGAATAAGGAGGAAGAATTACCAAGTGATGTTGAATTTAATGAGACTTCGGTACTTGTTAATGATTTATTAGCAGCCGTTGTTGATACAAACTCAGATCATTTAGTTGAAGCATCACCTACTCCTGTTCTAAATTGTGAAAATGATTCGAATAGTGGAAGTTTAGATatgaatgaaatttatattatagagacataa
Protein Sequence: MSKKSIENGVNNVIINVDLKSLDFESDVSSDMNHGIETQVLDRLVTGDDDLTEKLEKTCRCCLAENDDLKPIFDPDDCISSMIVLLTSVQLSQNDCLPTNICLECIEQLIKCINFKQQVETADMTLRHYVTEGYFQGMTLQKVDIEELTKKLTESQEFESSDLKKPSSNGDQNYNLSSVKESENCIENENMINETQENDITSSNQEDEEIESNDNDNNVFLENYETELIKQSHDINSPTIVSMKKRKRKQYECTICNKTFINQKLYFHHMKSHICNVCNRSFKTTEILNNHIKCHRQELTASNIDDKFKCNECDMIFTFENDLYIHGSIHVDSKKFICRKCDKEFPNCLKLKRHVRTHFEDKPYKCPQCGRGFPEMSSLTRHFRLHSGEIREKKHVCTDCGKRYYDLHSLSVHRRNHTGEKPYVCEFCDKRFIDSRLLNSHMKTHMVEKLYACDKCNRRFTHQSTLTTHIRTHTGEKPYVCEFCSKTFIQSSNLSLHMRTHSGIKPYKCNFCSSAFASSSTLTSHKRTHTGEKPYSCSECGKTFARFDLKAHMRTHTGEKPFECLICLKRFITGGQLNQHKRIHNREKVFSCDCCNKCWSTEIELKEHLQKHSDDNEKLDTNYLEQQREHTLPNKEEELPSDVEFNETSVLVNDLLAAVVDTNSDHLVEASPTPVLNCENDSNSGSLDMNEIYIIET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -