Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730478.1:62124396-62128956[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00081 0.059 14.7 0.1 2 23 109 130 108 130 0.96

2 16 0.017 1.2 10.6 1.9 3 23 138 159 137 159 0.96

3 16 2.6e-07 1.9e-05 25.7 0.3 1 23 192 214 192 214 0.97

4 16 0.00023 0.017 16.4 2.5 1 23 220 242 220 242 0.96

5 16 1.9e-05 0.0014 19.9 0.1 1 23 248 270 248 270 0.98

6 16 6.6e-06 0.00048 21.3 1.8 1 23 276 298 276 298 0.99

7 16 1.7 1.2e+02 4.3 0.8 1 8 304 311 304 312 0.93

8 16 0.0029 0.21 12.9 2.0 1 23 368 390 368 390 0.96

9 16 0.00035 0.025 15.9 1.4 2 23 397 419 397 419 0.96

10 16 0.88 64 5.1 0.0 6 23 428 446 428 446 0.94

11 16 0.00043 0.031 15.6 0.5 1 23 451 473 451 473 0.97

12 16 2.7e-05 0.002 19.4 2.9 1 23 479 501 479 501 0.96

13 16 0.0012 0.087 14.2 1.8 2 23 508 529 507 529 0.96

14 16 0.00016 0.012 16.9 1.3 1 23 535 557 535 557 0.98

15 16 1.6e-05 0.0011 20.1 1.4 1 23 563 585 563 585 0.98

16 16 0.0011 0.08 14.3 1.0 3 23 593 614 591 614 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00081	0.059	14.7	0.1	2	23	109	130	108	130	0.96
2	16	0.017	1.2	10.6	1.9	3	23	138	159	137	159	0.96
3	16	2.6e-07	1.9e-05	25.7	0.3	1	23	192	214	192	214	0.97
4	16	0.00023	0.017	16.4	2.5	1	23	220	242	220	242	0.96
5	16	1.9e-05	0.0014	19.9	0.1	1	23	248	270	248	270	0.98
6	16	6.6e-06	0.00048	21.3	1.8	1	23	276	298	276	298	0.99
7	16	1.7	1.2e+02	4.3	0.8	1	8	304	311	304	312	0.93
8	16	0.0029	0.21	12.9	2.0	1	23	368	390	368	390	0.96
9	16	0.00035	0.025	15.9	1.4	2	23	397	419	397	419	0.96
10	16	0.88	64	5.1	0.0	6	23	428	446	428	446	0.94
11	16	0.00043	0.031	15.6	0.5	1	23	451	473	451	473	0.97
12	16	2.7e-05	0.002	19.4	2.9	1	23	479	501	479	501	0.96
13	16	0.0012	0.087	14.2	1.8	2	23	508	529	507	529	0.96
14	16	0.00016	0.012	16.9	1.3	1	23	535	557	535	557	0.98
15	16	1.6e-05	0.0011	20.1	1.4	1	23	563	585	563	585	0.98
16	16	0.0011	0.08	14.3	1.0	3	23	593	614	591	614	0.97

Sequence Information

Coding Sequence: ATGACGAAAGGCAAGAAAATGCGGCAACAATGTTTGCAAACTGAAATAACTTTAAAAGACATATTTCAAAGTCCTGATTTCATAAAGAAAGAAGACGGTTGTGAATGTGTTTTACCAAATTTGCCAGAAAATAATACAGAAGGTAcccaaaaaaaacgaagaaaAAGACTGACAAAGAATTTGGAATCACCTAAAGTTGGTCATCAGTATGGAGaagtaaaaaaagaagataGATGTGAAGATATTCCACCAAATCGAGAAGACAGTCATAAAACCAGCGGTGAAGAGTGCCAAAACAGaaaaataaaacataatttcccattACAATGTAATATATGTAACCGAGGATTCATCTATCAGGAATTACTTGACGGACATTTGAGGGAACACGATGGAAAAAACATCGCTATTTGCGAATTTTGTAGTAATGAGTATAGTACTTGGAATGGCCTTCGGCAACATATTAAAAAGTGTCATTTGGCTGAAACAAAATATCATTGTGATTGCGGCAAATTATATCTATTTGAAAGTTCTTTTGAAACACATCGTGCCTCACATTACGGCccacaaaaatatatttgtgaAACTTGTGGAAAGTCATTTCCTGATCAAAGTGATCTaaaaagacaTTTTCTTGTTCATACGGATGAGAGACCATTCCAATGCAAAACCTGTAACAAAACTTTTAAATCTGAACGTAATTTACGTCCTCATGAACTTCGTCATACCGGAATCGGTAAATTTCCATGCGAAGTTTGTGGAAAAGCATTTTGGAAACGTGCTGAATTAAAAAGACATATGCTGATTCATACTTTGCTGAAAGCATATAAATGTACACTTTGTGAAAAAGATTTCcgttataaaaatcaattagatGTTCATATGCGAATGCATACCGGGGAAACCCCTTTCAAATGTGAAATATGTGGAAAAGaagaaaattcaaatgaatCAGATGATGGTGGGAATAAAGACGACAATTCAAATGAAGAAGAATACTCTGAAGATAATTCTGATACAAGTGATGATGTTCCAAGGAAATCAAAACGCCAAAAAAGTGTGAAAAATCCTCGACCAAATAGGAAAAAAGTTAACTATCCATATCTATGTCATATTTGCAATAAAGGGTTTCGATTTGAACAACGTCTTAATGGTCACTTACGAGAGCATGAAGGAAAACCAatgGCGGTTTGTGAATTTTGTAGTCGGGAATACAGTCATTGGTCGGGTTTATTAAATCATCTTAGGAAAAATCATTCTGCAGAAACGGAATATCGTTGTTGTGGCAGAGCATTTTTAACTGAAAGTTTACTTGAAGCGCATCAAGTCTCACAACATGGTCCACGGGAATATATTTGTGAACTTTGTGGAAAAAGTCTACGTGATAAAACTAGACTCGATaaacatCGTCTTGTTCATACCGATGAAACTCCATTTAAATGTAATAACTGCGATCGTGCTTTTAAAACTCAGAAAAGCTTACGTGACCATGAATTTCGTCATACTGGAGTTAGAAATTGTGTATGCCAAATATGTGAAAAACCGTTTGTTACACGTGCGGAATTAAAATGTCATATGCTAGTTCATACGAATATGAAAGCATATAAATGTAATCTTTGTGAAAAAGAATACCGTTATAGAAATCAATTAATTATACATAAACGCGCCCATAGTGGTGAGAAACCATATAAATGTAATACTTGTGGTCAATCATTTACAATGATATCTTCTCTGAAGAGTCATAATCGAATTCATACTGGCGAAAGACCTTACGGTTGCGAATTGTGTGGTAGGACGTTTGTGTCACGACAAAGTCTAcgatttcatataaaaactaaACATGCAGAATCAGGAACTGAACCAGCAGGACCAGCTACAGcttcaaattga
Protein Sequence: MTKGKKMRQQCLQTEITLKDIFQSPDFIKKEDGCECVLPNLPENNTEGTQKKRRKRLTKNLESPKVGHQYGEVKKEDRCEDIPPNREDSHKTSGEECQNRKIKHNFPLQCNICNRGFIYQELLDGHLREHDGKNIAICEFCSNEYSTWNGLRQHIKKCHLAETKYHCDCGKLYLFESSFETHRASHYGPQKYICETCGKSFPDQSDLKRHFLVHTDERPFQCKTCNKTFKSERNLRPHELRHTGIGKFPCEVCGKAFWKRAELKRHMLIHTLLKAYKCTLCEKDFRYKNQLDVHMRMHTGETPFKCEICGKEENSNESDDGGNKDDNSNEEEYSEDNSDTSDDVPRKSKRQKSVKNPRPNRKKVNYPYLCHICNKGFRFEQRLNGHLREHEGKPMAVCEFCSREYSHWSGLLNHLRKNHSAETEYRCCGRAFLTESLLEAHQVSQHGPREYICELCGKSLRDKTRLDKHRLVHTDETPFKCNNCDRAFKTQKSLRDHEFRHTGVRNCVCQICEKPFVTRAELKCHMLVHTNMKAYKCNLCEKEYRYRNQLIIHKRAHSGEKPYKCNTCGQSFTMISSLKSHNRIHTGERPYGCELCGRTFVSRQSLRFHIKTKHAESGTEPAGPATASN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -