Xate022246.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730483.1:9970112-9972928[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 0.12 13.7 1.0 1 23 131 154 131 154 0.94 2 14 0.0019 0.14 13.6 1.6 2 23 160 182 160 182 0.95 3 14 4.3e-05 0.0031 18.7 0.5 2 20 192 210 191 212 0.93 4 14 0.4 29 6.2 1.3 2 20 237 255 236 257 0.90 5 14 6e-05 0.0044 18.3 6.7 1 23 383 405 383 405 0.96 6 14 6.4e-05 0.0046 18.2 6.1 1 23 411 433 411 433 0.97 7 14 6.1e-05 0.0044 18.2 1.1 1 23 439 462 439 462 0.96 8 14 0.00013 0.0098 17.2 1.3 3 23 474 494 473 494 0.98 9 14 0.0001 0.0075 17.5 1.1 2 23 500 521 499 521 0.96 10 14 4.2e-06 0.00031 21.9 0.4 1 23 527 549 527 549 0.96 11 14 3.1e-06 0.00022 22.3 0.7 1 23 555 577 555 577 0.98 12 14 2.4e-06 0.00018 22.6 0.7 3 23 585 605 583 605 0.96 13 14 7.2e-06 0.00053 21.1 2.1 1 23 611 633 611 633 0.99 14 14 0.00085 0.061 14.6 0.9 1 23 638 661 638 661 0.98
Sequence Information
- Coding Sequence
- aTGGAAGAAATAAAACTTGATAAACGAAACATTTGCCGTACTTGTTTGCGATGTGATGtccaattaaaatcaatttttattgaaaatgacTCGGAGGATGGTGAACAACAACAACCCTATGTGGAGGATTTGATACCAATTTCACAAATGATTTCAGCATGCACAGTTTATccaGTGAAGAAAAATGATAATTATCCAACTCAGATATGTGTAACTTGTTTGGGAACTGTTAAAATTGCATATGATTTTAAATTGCAATGCCAAAAAGCCTATGAGAAACTTTCAATATTATTTGGTGTagattataaagaaaatttcattaaagcCGAAGATTTATATGAAGAAATAGCGCCTTCCGATAAATCAACACAAACCGATGAAATGGGATTATATCCATGTGAAAAATGTGAAGAGAAATTTTTCAGTTATGAATCTTTAAagCAACATCGTCAAGATGAGCATAAAGGTAGTGAGAATCGATGTCGTGTATGTTCGAAAACTTATGGTCGTATAACACATTTGAAACGACATATTGCAAGTGCACATCCTGAAATGGGTTTCAAAGCTGATATTGAATGTAAACATTGTGAGAAACGTTTTACAAGACCGGAACGTTTAAAAAGACATTTAGCTGTATGCCAACAAAAACCACCACAACCAGAAGAAGAAATGTCTCAATGTGACAACATGGCGGATTCAGTAAAAACTGAATGTAAGGATTGTAAAATGATATTTACAAATGATAATGAATTTGTCGAACATAAATGTAACGCAAATGATTCAAACACttcattacaaattgaagaaaattcagaactttATGAAGCAGAAATTCCATTTACAAATAATGATggtttattattaattgaacaAGAAGCAGAAGAAGCAGAAGACGATGGTGGACATTTTGATGCTGAACCATATTTAAGCGTTTCATATGAGAAAAAGGTTGAACTAATGAAAGAAGAGGAAATGAGCaccgatgatgatgatgattataaACCACTTtctgaattaaaaactcagggcGAAACAAAAtctgaagaaaataattatttaggaaaagaaaataataaaactgtTGTTCGGAAATCgggaaattcaaataaaacacagaaaaaaaatcgTAAATCCAGTGAAAAAGAGCATCGTTGTGAAATATGTAGTAAAGTTTTTACACGTTCGACACATTTAAAACGTCATTCATTTACACATTTAGATGAGAAACCATTTTCATGTAATGTTTGTAATAAAGGTTTCACCCGTTTGGATCATCTCAATATTCATATGCATCATCATTCTGATACAAAACCATATACATGTGATTTATGTGATCGTGGTTTTATCCGTGCAAATCATTTACGTGCTCACAAAGAGTCACGTCATGGTGAGAAAATAGTCTCACCGAAAAAAGAGTTTTGTGAAATCTGTAAAAAAGGTTTTACCACAATgaaatatttacaaatccaTCTAAAAAGTCATACGAATCGTGCATGGAATTGTAAATTTTGTCCAGAACAATTTCAAACGAAAACCGAATTAACAGATCACATGAAAACTCATGCAAatgaaaaaccatttttatGTTCTGAATGTGGTTTAAGATTTGTACGAAATGATTATTTAGTTATTCATATGAGACGTCATAAAGGTGAGAAACCATATAAATGTAAATTCTGTGGTAAAGGTTTTCCGCGTGCAACCGATTTAACTGTACACGAAAGATATCATACCGGTGAAAAGACACATTTATGTACAGTTTGTGGTAAAGGTTTTCAACGTGCCTACAATTTATTGGTACATATGCGAGTGCATACTGGTGAACGTCCATATCAATGTACACATTGTTCAAAAAGTTTTGCACAAGGTAATGATTTAAAAGCACACGTTCGTCGTCATACCGGTGAACGTTTTAAATGTGAAATATGCGGTGACGGTTTTATACAAGGTTATCATTTAACACAACATAAACGTTCAGTACATGGTATCGACGTTAAATCACATATAAGACGTGTTGCGAAATTTACAACACCAACTGAACAACAATTACAAATTCATATACAACATCAATTGGCTACAGATCCGAAATCGAATGAGGATGATTGTGAAATCGAAGGACAAATTATGTTGCCAGAAGaaagtaatataaaaattgaaagaattgAAGAAGGTGTTAAATTCGAAGATGGAAGTGATAATTCTGtgCATAATCAAATAATCGATTCTGAACATGGAGAAATTCTACAAAGTGAACAACATAATACAATTTCGGTTCTTGATGAAACCGGATTAAGAATGATAGCTCCGGTATTTTTACAATTagatcaaaaattcaaatatgaaaatgattga
- Protein Sequence
- MEEIKLDKRNICRTCLRCDVQLKSIFIENDSEDGEQQQPYVEDLIPISQMISACTVYPVKKNDNYPTQICVTCLGTVKIAYDFKLQCQKAYEKLSILFGVDYKENFIKAEDLYEEIAPSDKSTQTDEMGLYPCEKCEEKFFSYESLKQHRQDEHKGSENRCRVCSKTYGRITHLKRHIASAHPEMGFKADIECKHCEKRFTRPERLKRHLAVCQQKPPQPEEEMSQCDNMADSVKTECKDCKMIFTNDNEFVEHKCNANDSNTSLQIEENSELYEAEIPFTNNDGLLLIEQEAEEAEDDGGHFDAEPYLSVSYEKKVELMKEEEMSTDDDDDYKPLSELKTQGETKSEENNYLGKENNKTVVRKSGNSNKTQKKNRKSSEKEHRCEICSKVFTRSTHLKRHSFTHLDEKPFSCNVCNKGFTRLDHLNIHMHHHSDTKPYTCDLCDRGFIRANHLRAHKESRHGEKIVSPKKEFCEICKKGFTTMKYLQIHLKSHTNRAWNCKFCPEQFQTKTELTDHMKTHANEKPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTVCGKGFQRAYNLLVHMRVHTGERPYQCTHCSKSFAQGNDLKAHVRRHTGERFKCEICGDGFIQGYHLTQHKRSVHGIDVKSHIRRVAKFTTPTEQQLQIHIQHQLATDPKSNEDDCEIEGQIMLPEESNIKIERIEEGVKFEDGSDNSVHNQIIDSEHGEILQSEQHNTISVLDETGLRMIAPVFLQLDQKFKYEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -