Xate026631.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730484.1:45293574-45294902[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.27 20 6.7 1.2 1 23 65 87 65 87 0.94 2 12 0.00035 0.026 15.8 3.5 1 23 124 146 124 146 0.99 3 12 5.2e-07 3.8e-05 24.7 7.6 1 23 152 174 152 174 0.99 4 12 2.1e-06 0.00015 22.9 1.3 1 23 180 202 180 202 0.98 5 12 9.3e-07 6.8e-05 23.9 2.7 1 23 208 230 208 230 0.98 6 12 3.3e-05 0.0024 19.1 1.5 1 23 236 258 236 258 0.99 7 12 6.5e-07 4.7e-05 24.4 1.9 1 23 264 286 264 286 0.99 8 12 3.8e-07 2.8e-05 25.2 2.3 1 23 292 314 292 314 0.98 9 12 1.6e-06 0.00012 23.2 2.4 1 23 320 342 320 342 0.99 10 12 0.00087 0.063 14.6 0.2 5 23 352 370 351 370 0.96 11 12 0.00018 0.013 16.7 2.5 1 23 385 407 385 407 0.99 12 12 4.7e-05 0.0034 18.6 3.1 1 20 413 432 413 435 0.95
Sequence Information
- Coding Sequence
- atggCTGCAGAATTTTTGGAAacagaaacatttttatttgcGAACGAAAATCAGtctgattttattttaacagaaattgcAATAAAACAAGAACCGGAATTGATTATAGAGGACGAATTGgaaactgagaaaattcgtgaatatttacataaaaacgaTATAACTGAAGAAGATCGAATTAATTTAGTTTGGCATACTTGTCTAATATGCGACGAGCGTTTCTTAAGTGTCGAGGATTTATCATTGCATCACCAAGGCCACCGCAATACGGTGGAAACTTCAACGAGTTCTTCGAATTACAGTGAATCACATCCTAATAACAATTTACGTCGGCAATCCCATATGAACATGAATactaaagaaaaacaatttaaatgcgATCGTTGTAATTGTTCATATCAACGAAAGGGAAATTTAGTAGAACATGAACGAACTCATGACGGTGAACGGCCTTACAAATGTCATTATTGTGAGAAGACATTTAGACGAAATGATCATCTGCAAAAACATGAaatgacgcatactggtgaaaaaccattcaaatgtgatcaatgcgatcgttcatttattGACAAGCGTCAGTTGATAGCACATAATCGAAAACATACCGGCGAATGTCCGTACAAATgtcaattttgtgataaaaaattTACACAAAGTCGAGCTCTTCAAAAGCATATACAACTTCATACTGGTGAAAAGTCATTTAAATGCGATCTTTGCGATTCTTCATATACTGAGAAGGGAAACTTAGTAAAACATTATCGAAAGCATACTGGCGAACGACCTTACAAATGTCATCTTTGTGATGAAGCATTTATACGAAGTGATTACCTGCTAAAGCATCAAATGACACATACTAGTGAAAAATCATTCAATTGTGAtcaatgcgatcgttcattCATTGACAAGCATTACTTGACAGCACATATACGGACTCATACcggtgaaaaaccatttaaatgtgataaTTGTGATAAAACATTTGAACTCAATCGTAGTCTTCAAAGGCATCTAAAGACTCATACTAGAgggaaaacatttaaaagtgATCTTTGCGATCGTTCATATTCTCAAAAAAACGGCCTTGAAGTACATTATCGAAAACATACCGGCGAATGTCCTATAAAAACTCATACTAAAGATAAACCGTATAAATGCGATCTTTGCGATTGTTCATTCATTGACAAGCGTCAGTTGATAGGACATAATCGAAAACATACCGGCGAATGTCCATACAAATGTCATCACTGTGATAAAACATTTGCATATTTGCAATCTCTTAAAGAGCATATACCACTTCATACTGGCGAGAAACAATTCAAATGA
- Protein Sequence
- MAAEFLETETFLFANENQSDFILTEIAIKQEPELIIEDELETEKIREYLHKNDITEEDRINLVWHTCLICDERFLSVEDLSLHHQGHRNTVETSTSSSNYSESHPNNNLRRQSHMNMNTKEKQFKCDRCNCSYQRKGNLVEHERTHDGERPYKCHYCEKTFRRNDHLQKHEMTHTGEKPFKCDQCDRSFIDKRQLIAHNRKHTGECPYKCQFCDKKFTQSRALQKHIQLHTGEKSFKCDLCDSSYTEKGNLVKHYRKHTGERPYKCHLCDEAFIRSDYLLKHQMTHTSEKSFNCDQCDRSFIDKHYLTAHIRTHTGEKPFKCDNCDKTFELNRSLQRHLKTHTRGKTFKSDLCDRSYSQKNGLEVHYRKHTGECPIKTHTKDKPYKCDLCDCSFIDKRQLIGHNRKHTGECPYKCHHCDKTFAYLQSLKEHIPLHTGEKQFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -