Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730478.1:53875856-53881131[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.8 6.4e+02 2.0 0.4 2 9 190 197 189 199 0.88

2 20 8.8e-05 0.0064 17.7 0.4 1 23 207 229 207 229 0.95

3 20 1.7e-05 0.0012 20.0 1.6 1 23 235 257 235 257 0.98

4 20 0.021 1.5 10.3 7.9 1 23 263 285 263 285 0.98

5 20 2.3e-05 0.0017 19.5 1.9 1 23 291 313 291 313 0.99

6 20 0.00066 0.048 15.0 0.9 1 23 319 341 319 341 0.98

7 20 1.3 93 4.6 0.3 2 23 422 440 421 440 0.87

8 20 1.3e-05 0.00095 20.3 2.2 1 23 446 468 446 468 0.98

9 20 8.3e-05 0.006 17.8 1.8 1 23 474 496 474 496 0.98

10 20 0.00027 0.019 16.2 4.6 1 23 502 524 502 524 0.96

11 20 0.0097 0.71 11.3 7.8 1 23 530 552 530 552 0.99

12 20 2.2e-05 0.0016 19.6 2.1 1 23 558 580 558 580 0.99

13 20 0.0065 0.47 11.9 1.7 1 23 586 608 586 608 0.97

14 20 0.00044 0.032 15.5 1.1 1 23 632 654 632 654 0.96

15 20 0.00037 0.027 15.8 0.9 1 23 752 774 752 774 0.98

16 20 0.00025 0.018 16.3 0.3 1 23 780 802 780 802 0.97

17 20 3.1e-05 0.0022 19.2 3.1 1 23 808 830 808 830 0.98

18 20 0.066 4.8 8.7 8.6 1 23 836 858 836 858 0.99

19 20 3.4e-06 0.00025 22.2 2.4 1 23 864 886 864 886 0.99

20 20 0.0042 0.3 12.5 0.9 1 23 892 914 892 914 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.8	6.4e+02	2.0	0.4	2	9	190	197	189	199	0.88
2	20	8.8e-05	0.0064	17.7	0.4	1	23	207	229	207	229	0.95
3	20	1.7e-05	0.0012	20.0	1.6	1	23	235	257	235	257	0.98
4	20	0.021	1.5	10.3	7.9	1	23	263	285	263	285	0.98
5	20	2.3e-05	0.0017	19.5	1.9	1	23	291	313	291	313	0.99
6	20	0.00066	0.048	15.0	0.9	1	23	319	341	319	341	0.98
7	20	1.3	93	4.6	0.3	2	23	422	440	421	440	0.87
8	20	1.3e-05	0.00095	20.3	2.2	1	23	446	468	446	468	0.98
9	20	8.3e-05	0.006	17.8	1.8	1	23	474	496	474	496	0.98
10	20	0.00027	0.019	16.2	4.6	1	23	502	524	502	524	0.96
11	20	0.0097	0.71	11.3	7.8	1	23	530	552	530	552	0.99
12	20	2.2e-05	0.0016	19.6	2.1	1	23	558	580	558	580	0.99
13	20	0.0065	0.47	11.9	1.7	1	23	586	608	586	608	0.97
14	20	0.00044	0.032	15.5	1.1	1	23	632	654	632	654	0.96
15	20	0.00037	0.027	15.8	0.9	1	23	752	774	752	774	0.98
16	20	0.00025	0.018	16.3	0.3	1	23	780	802	780	802	0.97
17	20	3.1e-05	0.0022	19.2	3.1	1	23	808	830	808	830	0.98
18	20	0.066	4.8	8.7	8.6	1	23	836	858	836	858	0.99
19	20	3.4e-06	0.00025	22.2	2.4	1	23	864	886	864	886	0.99
20	20	0.0042	0.3	12.5	0.9	1	23	892	914	892	914	0.98

Sequence Information

Coding Sequence: ATGTTCCTTAAACCGATATTTGTTGATGAAAATAGTGAGCATCAAATTAATGAAGACGAATTAACAGAAAGAAGTATCAGCAATATGATCGAAAAGTGCactaaaataaaaATTCTTCGTATGGATCGTTTGCCAAAATATGCGTGTGGTGAATGTTTGGCTCAACTTTTAAAGTGTTACTACTTTCGTAAACAATGTATTAAATCCgatgaaatattgaaaaatatagtcGAACATTATAGAAAtgagaaaaatgaaatatttaccAATGATTTACCAATAgaaatttgtattaaaaatgaaGATATAGAAGAAACAAGCTCATATAGAAGTAATATTAGCGAAGAGCCCTTACGGGGTAGCGAAGAACAAACAGAGAATGAATCTGATAATCACACAATATCAGAAATACGGAGAAATAAGAAAAGAAGTCGACTGGGAATtaagaaaaaacgaaataaatgtGGAAATAGAGAAAGGAATCATAACAAATACGATTCATTAAAACATAAATCAGAGAGGATACATTCGGAAAAAGATGAATCAAATTCAAAAAGCCAATTAAAACAATGTCAAATTTGCGGTAAAATGGCAAAAGGTATTAAACTACATATagaatacAAATGTGATGTATGTGAAAAAGGATTTAATGATCCAAAATCATTGAAAGTTCATTCTGTTCGTCATACGGGTGAAAAGAATTTCGTTTGTGATGTTTGTCACGAAGCATTTAGATACCCGAACAGTTTGAGCCGGCACAGGCGAAGTCATTTTCAAGATCGTCGCTATGAATGCGATACATGTCATAAATGGTTCTATACGAAGTCCTGCCTGAAGAAACACAATCGTTCACATACTGGAGAGAAACCTTATCAATGCGAATATTGTCCAAAACGTTGCTCACAATCTGGAAGTTTAATtatgcatacaaaaattcacaCGAACGGAGCACCTTATAAATGTTCCGTTTGTGAAAGCAGTTTTGTTTATAAAGCAGATTTAAATGAACATTTCAAAAGTCATGACCGGGAAGATggcaaaatagaaaataatcaaactaaagaaaatattgattgtaatcaatcaatcaatttaGAGAGTGAAAAAACAAATGAAGTATCAGAACAAATGAATTTAGCTGAAGAATCTGAAAATATGAAGGATGATAGGAAAATATCAAAACTtccagaagaaaataaaaagcgGAGAGAGAGATATAGAAATAAAGCTTCAAGAACcggaataaaagaaattaaacggGATCAGTGCCAAATTTGTGGATTGATGGTGACACAATTAAAAACTCATATGATATCACATACTGGCGAAAAGAATCATAAATGCACGATTTGCGAGAAAACTTTTACCACAAAAGCAGAACAAATAAGACACATGAGTATTCATTTAAATCGTAGACAATTTAAATGTGATTTATGCGAAAAGGGGTTTAATACTTCGAAAACACTGAAGCTTCATTATGACACGCATTCaggtgaaaaaaaatttctttgtgaTGTATGCAAGCAACATTTTAGCACTAAGAACAGTTTGAGACTTCACAGGCGTACTCATTTTGATGATCGTCGATATGAATGCAGTATTTGTCATAAATTATTCTACACAAGCACTTGTGTAAAGAAGCACAAACGAACTCATACCGGCGAAAGACCATATCAATGTGAATATTGTCCAACACGTTGCACAAGCGCTGGAAATTTGAATAAGCACAAAATAACTCATACGAATGGAGCTCCGCACGAATGTAATCTCTGTGACAGTAAATTTTTCTACAAAGCTGAACTAGTAGATCATTTAAAAAGTCATAAGGCTGGGGAGCCGATTATTCATTCCGATAAATCGGCGAATAATATAAACAATTCAAATCGAAAAAGGTTTGCTTGTGATTTATGCTCTCAATCCTTTAACTATATGAGTAGTTTAAAGCGTCATAAGCTTATTCATTCTGAAGAGCGTCGTTATGAATGCAATGAAGAAGATAAGGATTCGAGTATGGGATTAGATCAAGGAAATTCAACGGAACAATCAGTAAACGGAAAGGAAAGCAAAGATTCAGATCAGGATATACCAAAAGTTAGACTAGAAAAGAACAGAAAGCAAAGAGAAAGATACTATAGAAATAAAGCTACTGGAATTGCAATTAAAAAGGAACTTAGACGGGATCAGTGCCAAATTTGTGGCTTGTTGGTGACACAAATAAAAGCTCATATGTTATCACATACCGgagaaagaaattataaatgtaCGTTTTGTGAGAAAGCTTTTAAAGCAAAAGGAGAACAAATGAGGCACATGAGTATTCATTTAAATCGTAGAGAATTTGAATGTGATATTTGTGCAAAAGCGTTTAATACTTCCAAAGCACTGAAACTTCATTCTGACACTCATTcagatgaaaagaaattttcttgtgATGTATGCAATCAACATTTTAGCTCTAAGAACAGTTTGAGAGTTCACAGGCGTATTCATTTTGATGATCGTCGTTACGAGTGCACTACTTGTCATAAATGGTTTTACACAAAGTCCTGCGTTACGAAGCACAAGCGAACGCATACCGGTGAGAAGCCATATAAATGCGAATATTGTCCAAAAAGCTATGGAAATTCATCAAATTTCGTTAAACACAAGAAAACTCATACCAATGGAGCTCCGCACAAATGCGTTATTTGtgaaagcaattttgtttatagaGCAGACTTAAACGAACATTTGAAAAGCCATAAAAACGATAAAGCTAAGGCTGTAAACGATAAGCGATCTGATACTAAAAGTGTTTTAAGTTAA
Protein Sequence: MFLKPIFVDENSEHQINEDELTERSISNMIEKCTKIKILRMDRLPKYACGECLAQLLKCYYFRKQCIKSDEILKNIVEHYRNEKNEIFTNDLPIEICIKNEDIEETSSYRSNISEEPLRGSEEQTENESDNHTISEIRRNKKRSRLGIKKKRNKCGNRERNHNKYDSLKHKSERIHSEKDESNSKSQLKQCQICGKMAKGIKLHIEYKCDVCEKGFNDPKSLKVHSVRHTGEKNFVCDVCHEAFRYPNSLSRHRRSHFQDRRYECDTCHKWFYTKSCLKKHNRSHTGEKPYQCEYCPKRCSQSGSLIMHTKIHTNGAPYKCSVCESSFVYKADLNEHFKSHDREDGKIENNQTKENIDCNQSINLESEKTNEVSEQMNLAEESENMKDDRKISKLPEENKKRRERYRNKASRTGIKEIKRDQCQICGLMVTQLKTHMISHTGEKNHKCTICEKTFTTKAEQIRHMSIHLNRRQFKCDLCEKGFNTSKTLKLHYDTHSGEKKFLCDVCKQHFSTKNSLRLHRRTHFDDRRYECSICHKLFYTSTCVKKHKRTHTGERPYQCEYCPTRCTSAGNLNKHKITHTNGAPHECNLCDSKFFYKAELVDHLKSHKAGEPIIHSDKSANNINNSNRKRFACDLCSQSFNYMSSLKRHKLIHSEERRYECNEEDKDSSMGLDQGNSTEQSVNGKESKDSDQDIPKVRLEKNRKQRERYYRNKATGIAIKKELRRDQCQICGLLVTQIKAHMLSHTGERNYKCTFCEKAFKAKGEQMRHMSIHLNRREFECDICAKAFNTSKALKLHSDTHSDEKKFSCDVCNQHFSSKNSLRVHRRIHFDDRRYECTTCHKWFYTKSCVTKHKRTHTGEKPYKCEYCPKSYGNSSNFVKHKKTHTNGAPHKCVICESNFVYRADLNEHLKSHKNDKAKAVNDKRSDTKSVLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -