Xate028362.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730485.1:24801735-24803453[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.07 5.1 8.6 1.1 3 23 101 122 99 122 0.95
2 16 1.3e-05 0.00093 20.4 0.5 2 23 140 161 139 161 0.97
3 16 0.01 0.76 11.2 5.0 1 19 167 185 167 189 0.95
4 16 0.00015 0.011 17.1 0.6 2 23 196 217 196 217 0.98
5 16 0.00023 0.017 16.4 2.1 1 23 223 245 223 245 0.98
6 16 1.2e-08 8.7e-07 29.9 2.4 1 23 251 273 251 273 0.99
7 16 0.00015 0.011 17.0 3.4 1 23 279 301 279 301 0.98
8 16 0.0043 0.31 12.4 5.2 1 23 307 329 307 329 0.99
9 16 5.4e-07 3.9e-05 24.7 5.0 1 23 335 357 335 357 0.98
10 16 0.12 8.4 7.9 4.2 1 23 363 385 363 385 0.98
11 16 1.7e-06 0.00013 23.1 1.3 2 23 392 413 391 413 0.97
12 16 0.0002 0.015 16.6 5.4 1 23 419 441 419 441 0.99
13 16 3.5e-08 2.5e-06 28.4 1.0 1 23 447 469 447 469 0.99
14 16 1.1 77 4.9 3.9 1 23 475 497 475 497 0.98
15 16 9.3e-05 0.0068 17.7 0.3 2 21 504 523 504 524 0.94
16 16 0.00017 0.012 16.9 4.5 1 23 531 553 531 553 0.97

Sequence Information

Coding Sequence
ATGTTAGAAATGAATAGTATATTATTTTCGGAAAATAACAGTGAAGAAAGCCAATCATCCGAATTTATTTTTCCTACAGTTTCTATTAAACAAGAGCCTGAATTAGTAATAGAGGATGAATTagaaactgaaaaaattcgtaaatttttacaaaaaaacgatataactGAAGAAGATCGATTAAATTTAGTTTGGCATGATTGTATAATATGTGAGGAACGCTTTTTAAGTATCGAAGAAGTCTCACTGCACAAGGAAAGTCATATAAGCGCCGAAGTAGATTCTACAAAAGTAATTAACTGTGATATGTGTGAagcgaaatttttcttttacaactCTTTACTTAAACATAAACGTATTTTTCATCAAAACTGCCATGACTCTGACCAAATGACAACCAATCATCTTTCCAATTTGAAATGTCCACAATGTAAGAACACCTATTCTACCAAGGAGGATCTAGAAATTCATCAGCGAGTTCATATTGGGGAAAGTTCTTTCAAATGCGATGAATGTGACAAACATTTTCAAAgtgaaatttctttaaaacgaCATTGCTATGGACACTCTCGGATGAAACCACGTACTTGTAAAACTTGTGGATTCACTACAAAATATTTGGGAAATTTAGCATTACACATGAGAATACATACTGGAGGAAAACGTTTTGAATGTGACCGTTGTAATCGTtcatttgttgaaaaaaaacGCCTGGTAACGCATTATCGAACGCACACCGGTGAACGTCCATACCAATGTTCTGAATGTGATAAATCATTTATACGAAGTGATCATCTTCAAAATCATATGAAGGTACATACAGGCGAGAAACCATTTACATGTAACCAATGTAATCGTTCATTTGCACGAAAAGCTGATTGTCAAACTCATATGATAACACATTCAGTCGATAAACCGTTTAAATGCCATCACTGCGATAATTCATATGTCGAAAGAAATCGCCTAGTAACACATTTACGCACACATACCGGTGAACGTCCTTTTGAGTGCCCTCATTGTGAAAAAACATTTACAAGGTGTGATGGCCTTAAAAATCATATGAAGATGCATACGGgcgaaaaatcatttaaatgcgATTGCTGTGATAATTCATATGTTGATAAGAAACGTTTATTAACCCATTTGCGTAAACATACAGATGAACGTCCTTCCGAGTGTCCTCATTgtgataaaatatttacaagaaGAAAGAGTCTTGACCGACATATATTGATACATAATAaagagaaaccatttaaatgtgatcactgcGATCATTCATATGTTGATAAAAAACGCCTAGTAACACATTTACGTACACATACCGGTGAACGTCCTTTTCAGTGTCCCCAATGTGATAAAACATTTATAAGACGTGATGGCCTCAAAAGCCATATGAAGATGCATATGGGTGAGAAACCATATAAATGCGATTGCTGTGATAATTCGTATGTTGAAAAGAATCGTCTAGTAACACATTATCGTAAACACATTGGTGAAAATAGTGGGCGATGCCCTCGTTGTGATGAAACATTCAAAGGGAAAGATGATTTTCAGAAACATATGAGTATAAATACTGGCAAGAAAGCATTCAAATGTGAAAAATGTCCAAAATCATTTGCCCGTAAATGTACGTACAATCAACATGTAAAAGATCATTCCTTTAAAAGAGATAATCAATGTTCGACAGCAGATATGgacaaaatagaaattaaatag
Protein Sequence
MLEMNSILFSENNSEESQSSEFIFPTVSIKQEPELVIEDELETEKIRKFLQKNDITEEDRLNLVWHDCIICEERFLSIEEVSLHKESHISAEVDSTKVINCDMCEAKFFFYNSLLKHKRIFHQNCHDSDQMTTNHLSNLKCPQCKNTYSTKEDLEIHQRVHIGESSFKCDECDKHFQSEISLKRHCYGHSRMKPRTCKTCGFTTKYLGNLALHMRIHTGGKRFECDRCNRSFVEKKRLVTHYRTHTGERPYQCSECDKSFIRSDHLQNHMKVHTGEKPFTCNQCNRSFARKADCQTHMITHSVDKPFKCHHCDNSYVERNRLVTHLRTHTGERPFECPHCEKTFTRCDGLKNHMKMHTGEKSFKCDCCDNSYVDKKRLLTHLRKHTDERPSECPHCDKIFTRRKSLDRHILIHNKEKPFKCDHCDHSYVDKKRLVTHLRTHTGERPFQCPQCDKTFIRRDGLKSHMKMHMGEKPYKCDCCDNSYVEKNRLVTHYRKHIGENSGRCPRCDETFKGKDDFQKHMSINTGKKAFKCEKCPKSFARKCTYNQHVKDHSFKRDNQCSTADMDKIEIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-