Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730480.1:10455895-10458711[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.21 15 7.1 1.4 1 23 65 87 65 87 0.96

2 24 0.044 3.2 9.2 7.0 1 23 114 136 114 136 0.99

3 24 0.013 0.93 10.9 2.5 1 23 146 168 146 168 0.98

4 24 3.7e-05 0.0027 18.9 4.2 1 23 174 196 174 196 0.99

5 24 0.001 0.076 14.4 2.0 1 23 203 225 203 225 0.98

6 24 0.58 42 5.7 1.7 1 23 246 268 246 268 0.96

7 24 0.047 3.4 9.1 4.1 1 23 295 317 295 317 0.98

8 24 0.0011 0.079 14.3 1.3 1 23 327 349 327 349 0.98

9 24 8.3e-06 0.0006 21.0 2.7 1 23 355 377 355 377 0.99

10 24 3.1e-06 0.00022 22.3 0.5 1 23 383 405 383 405 0.96

11 24 0.016 1.2 10.6 4.3 1 23 411 433 411 433 0.98

12 24 0.76 55 5.4 0.5 3 23 483 503 482 503 0.97

13 24 0.047 3.4 9.1 4.1 1 23 530 552 530 552 0.98

14 24 0.0011 0.079 14.3 1.3 1 23 562 584 562 584 0.98

15 24 8.3e-06 0.0006 21.0 2.7 1 23 590 612 590 612 0.99

16 24 3.1e-06 0.00022 22.3 0.5 1 23 618 640 618 640 0.96

17 24 0.016 1.2 10.6 4.3 1 23 646 668 646 668 0.98

18 24 0.76 55 5.4 0.5 3 23 718 738 717 738 0.97

19 24 0.047 3.4 9.1 4.1 1 23 765 787 765 787 0.98

20 24 0.00076 0.056 14.8 0.2 1 23 795 817 795 817 0.98

21 24 1.1e-05 0.00082 20.5 1.5 1 23 823 845 823 845 0.99

22 24 0.0057 0.41 12.0 0.5 2 23 852 873 851 873 0.97

23 24 0.13 9.4 7.8 0.4 5 20 882 897 880 900 0.92

24 24 1e-05 0.00075 20.7 1.9 1 23 906 928 906 928 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.21	15	7.1	1.4	1	23	65	87	65	87	0.96
2	24	0.044	3.2	9.2	7.0	1	23	114	136	114	136	0.99
3	24	0.013	0.93	10.9	2.5	1	23	146	168	146	168	0.98
4	24	3.7e-05	0.0027	18.9	4.2	1	23	174	196	174	196	0.99
5	24	0.001	0.076	14.4	2.0	1	23	203	225	203	225	0.98
6	24	0.58	42	5.7	1.7	1	23	246	268	246	268	0.96
7	24	0.047	3.4	9.1	4.1	1	23	295	317	295	317	0.98
8	24	0.0011	0.079	14.3	1.3	1	23	327	349	327	349	0.98
9	24	8.3e-06	0.0006	21.0	2.7	1	23	355	377	355	377	0.99
10	24	3.1e-06	0.00022	22.3	0.5	1	23	383	405	383	405	0.96
11	24	0.016	1.2	10.6	4.3	1	23	411	433	411	433	0.98
12	24	0.76	55	5.4	0.5	3	23	483	503	482	503	0.97
13	24	0.047	3.4	9.1	4.1	1	23	530	552	530	552	0.98
14	24	0.0011	0.079	14.3	1.3	1	23	562	584	562	584	0.98
15	24	8.3e-06	0.0006	21.0	2.7	1	23	590	612	590	612	0.99
16	24	3.1e-06	0.00022	22.3	0.5	1	23	618	640	618	640	0.96
17	24	0.016	1.2	10.6	4.3	1	23	646	668	646	668	0.98
18	24	0.76	55	5.4	0.5	3	23	718	738	717	738	0.97
19	24	0.047	3.4	9.1	4.1	1	23	765	787	765	787	0.98
20	24	0.00076	0.056	14.8	0.2	1	23	795	817	795	817	0.98
21	24	1.1e-05	0.00082	20.5	1.5	1	23	823	845	823	845	0.99
22	24	0.0057	0.41	12.0	0.5	2	23	852	873	851	873	0.97
23	24	0.13	9.4	7.8	0.4	5	20	882	897	880	900	0.92
24	24	1e-05	0.00075	20.7	1.9	1	23	906	928	906	928	0.99

Sequence Information

Coding Sequence: aTGACAGAAAAAATATTCGAATTAGAAACTGGTTTAGTTGCTGAAGGAAATCAATCGGACTTCATTTTAACAGAAGaagaaattaaacaagaaccagaattcattataaaagatgaaattgaaactgaaaatGTTCGTGAATACTTCGATAAGGACGATATATCTGAAGATGATCGAATGAATTTAGTTTGGCATGATTGTGAAATATGTGAAGAAAGTTTCTTAAACATCGAAGATTTATCATTGCATCACAAAAGTCATCGAAATTCTAAAGAATTTTCAACGAACATTTCGATTGAGGATGAATCTCGTCCTAAAAGCATTTATGGAAAGAAGGAGTTTCAATGCCATCGTTGCGATTGTTCCTATGATCAGGAAACTAGGCTAAGAGAACATTATCGACGGCATTTCGGTAAACGTTATATTAACTGGATATACTCATGCGTTCACTGCGATGAAGAATTTACACgtagaaatatttatgaaaagcATTTGACAACACATACTGCCGAAAAATCATACAAATGTGAATTTTGTGATCGTTCATATTGTGGAAAacgaaatttattgaaacataTACAAACCCATGCTGATGATAGAGAAGCATTTGAATGTGAAACTTGTCAACATCCATTTCGTAGTAAACGAGATTTATTATTACATTCACGAATACATGACGGTGAGTACTTGTATAAAGACGATGTAGCTGAAGATGATCCAATGAATTTAGTTTGGCATAATTGTGAAATATGTGAAGAACGTTTCTTAAACATCGAAGATTTATCATTGCACCACCAAAGTCATCAAGATTCTAAAGAATCTGCAACGAATATTTCGATTGAGAATGAATCGCCTCCTAAAAACATTTATGTAAAGAAAGAATTTCAATGCGATCGTTGTAATTGTTCATATGATCAGGAAACCAGGCTAAAAGAACATTATCGATTGCATCGCGGTAAACTTTATCCTAAAACGATACACAAATGTGCTCAGTGCGATGTAGCATTTACATATAGAATTGATTATGAAATGCATATGAAATCCCATCCAGGcataaaaccattcaaatgtgatattTGCGATCGTTCATTTTATGTAAACCATAATCTTGTAGTACATTACCGAAAACATACCGGTGAACGGCCTTATAAATGTCATATCTGTGATAAagcatttgcgggaagtagcAGTTTAAAAAACCATGTAGAGGCACATGGTGCcagaaaaccattcaaatgctcTCGATGCACGTGCTCATTTGATTCAAAAATTGGCCTCTCAAGACATTATCAATTGCATATTAAAACTTCAACGAATATTTCGATTGGAATTAAACAGGAACCAGAATTGATTATAGAAGATGAAGTTGAAAGTGAAAAAATTCGCAAATACTTACACAAAGATGATATAACTACAGAGGATCGAATGAATTTAGTTTGGCGTGATTGTGAAATATGTGAAGAACGTTTCTTAAACATCGAAGATTTATCATTGCACCACCAAAGTCATCAAGATTCTAAAGAATCTGCAACGAACATTTCGATTGAGAATGAATCGCCTCCTAAAAACATTTATGTAAAGAAAGAATTTCAATGCGATCGTTGTAATTGTTCATATGATCAGGAAACCAGGCTAAAAGAACATTATCGATTGCATCGCGGTAAACTTTATCCTAAAACGATACACAAATGTGCTCAGTGCGATGTAGCATTTACATATAGAATTGATTATGAAATGCATATGAAATCCCATCCAGGcataaaaccattcaaatgtgatattTGCGATCGTTCATTTTATGTAAACCATAATCTTGTAGTACATTACCGAAAACATACCGGTGAACGGCCTTATAAATGTCATATCTGTGATAAagcatttgcgggaagtagcAGTTTAAAAAACCATGTAGAGGCACATGGTGCcagaaaaccattcaaatgctcTCGATGCACGTGCTCATTTGATTCAAAAATTGGCCTCTCAAGACATTATCAATTGCATATTAAAACTTCAACGAATATTTCGATTGGAATTAAACAGGAACCAGAATTGATTATAGAAGATGAAGTTGAAAGTGAAAAAATTCGCAAATACTTACACAAAGATGATATAACTACAGAGGATCGAATGAATTTAGTTTGGCGTGATTGTGAAATATGTGAAGAACGTTTCTTAAACATCGAAGATTTATCATTGCACCACCAAAGTCATCAAGATTCTAAAGAATCTGCAACGAACATTTCGATTGAGAATGAATCGCCTCCTAAAAACATTTATGTAAAGAAAGAATTTCAATGCGATCGTTGTAATTGTTCATATGATCAGGAAACCAGGCTAAAAGAACATTATCGATTGCATCGCGGTAAAACTAAAACGATATACAAATGTGCCCAGTGCGATGTAGCATTTACATATAGAATTGATTATGAAATGCATATGGTAACCCATACAGGCGAAAAACCATACAAATGTGATCTTTGCGATCGTTCATATTATGCAAAATCAAATCTATTAAAGCATTTAAAAATGCATACTGATAGAGAAACATTACAATGCGAACGTTGTCAACGTCCATTTCGTACCAGACTAGCTTTATTATTACATTCACGAATACATAACAGTGACCGGGTTTTCAGATGTTATTGTGATAAAGCTTTTCTACGAAATGATTCTCTTCAAAAGCATATTTGGATTCATACTGGAGAAATTCCATTTCAATGTCCTTATTGTGCTAAGACGTTTTGTCAAGAAAATctccttcaaattcatataaataggCATATTAATGGAGAATCATTTAAAACTGATCACTGA
Protein Sequence: MTEKIFELETGLVAEGNQSDFILTEEEIKQEPEFIIKDEIETENVREYFDKDDISEDDRMNLVWHDCEICEESFLNIEDLSLHHKSHRNSKEFSTNISIEDESRPKSIYGKKEFQCHRCDCSYDQETRLREHYRRHFGKRYINWIYSCVHCDEEFTRRNIYEKHLTTHTAEKSYKCEFCDRSYCGKRNLLKHIQTHADDREAFECETCQHPFRSKRDLLLHSRIHDGEYLYKDDVAEDDPMNLVWHNCEICEERFLNIEDLSLHHQSHQDSKESATNISIENESPPKNIYVKKEFQCDRCNCSYDQETRLKEHYRLHRGKLYPKTIHKCAQCDVAFTYRIDYEMHMKSHPGIKPFKCDICDRSFYVNHNLVVHYRKHTGERPYKCHICDKAFAGSSSLKNHVEAHGARKPFKCSRCTCSFDSKIGLSRHYQLHIKTSTNISIGIKQEPELIIEDEVESEKIRKYLHKDDITTEDRMNLVWRDCEICEERFLNIEDLSLHHQSHQDSKESATNISIENESPPKNIYVKKEFQCDRCNCSYDQETRLKEHYRLHRGKLYPKTIHKCAQCDVAFTYRIDYEMHMKSHPGIKPFKCDICDRSFYVNHNLVVHYRKHTGERPYKCHICDKAFAGSSSLKNHVEAHGARKPFKCSRCTCSFDSKIGLSRHYQLHIKTSTNISIGIKQEPELIIEDEVESEKIRKYLHKDDITTEDRMNLVWRDCEICEERFLNIEDLSLHHQSHQDSKESATNISIENESPPKNIYVKKEFQCDRCNCSYDQETRLKEHYRLHRGKTKTIYKCAQCDVAFTYRIDYEMHMVTHTGEKPYKCDLCDRSYYAKSNLLKHLKMHTDRETLQCERCQRPFRTRLALLLHSRIHNSDRVFRCYCDKAFLRNDSLQKHIWIHTGEIPFQCPYCAKTFCQENLLQIHINRHINGESFKTDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -