Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730483.1:6791458-6793281[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.3e-06 9.7e-05 23.5 0.8 1 23 195 217 195 217 0.98

2 12 6.2e-05 0.0045 18.2 1.1 1 23 224 246 224 246 0.96

3 12 2.1e-06 0.00015 22.8 1.3 1 23 263 285 263 285 0.99

4 12 1.9e-06 0.00014 23.0 1.1 1 23 294 316 294 316 0.98

5 12 5.9e-06 0.00043 21.4 5.2 1 23 322 344 322 344 0.98

6 12 5.5e-05 0.004 18.4 6.7 1 23 350 372 350 372 0.98

7 12 1.4e-06 0.0001 23.4 0.3 1 23 378 400 378 400 0.95

8 12 6.2e-06 0.00045 21.4 0.3 1 23 406 428 406 428 0.98

9 12 0.0014 0.1 13.9 1.7 1 23 434 456 434 456 0.98

10 12 2.5e-06 0.00018 22.6 0.4 1 23 462 484 462 484 0.98

11 12 4.6e-06 0.00034 21.8 1.2 1 23 490 512 490 512 0.98

12 12 0.0021 0.16 13.4 0.3 1 23 518 540 518 540 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.3e-06	9.7e-05	23.5	0.8	1	23	195	217	195	217	0.98
2	12	6.2e-05	0.0045	18.2	1.1	1	23	224	246	224	246	0.96
3	12	2.1e-06	0.00015	22.8	1.3	1	23	263	285	263	285	0.99
4	12	1.9e-06	0.00014	23.0	1.1	1	23	294	316	294	316	0.98
5	12	5.9e-06	0.00043	21.4	5.2	1	23	322	344	322	344	0.98
6	12	5.5e-05	0.004	18.4	6.7	1	23	350	372	350	372	0.98
7	12	1.4e-06	0.0001	23.4	0.3	1	23	378	400	378	400	0.95
8	12	6.2e-06	0.00045	21.4	0.3	1	23	406	428	406	428	0.98
9	12	0.0014	0.1	13.9	1.7	1	23	434	456	434	456	0.98
10	12	2.5e-06	0.00018	22.6	0.4	1	23	462	484	462	484	0.98
11	12	4.6e-06	0.00034	21.8	1.2	1	23	490	512	490	512	0.98
12	12	0.0021	0.16	13.4	0.3	1	23	518	540	518	540	0.94

Sequence Information

Coding Sequence: atggAAACAGTGCTACaaagatttgaaaatatttgtcgTGCCTGTATGGCAAAAGCTGCAGAAATGCAGTGTTTATTCAATCCACAAATGGACTCAATGCCaatatcaaaaatgttttcACTTATTTGTACTATAAATATTTCTCCCGATGATGGTTTACCAAATACAATTTGTTCAAATTGTTTAAGTCTTCTAATAACTGCTCATGATTTTCAACAAATGTGTTTAAATTCAGAAACAGAAATGCGGAATATTTTGACTTCTCTGCCAGATTATAAACAAAATGAAcaggaaaaatttattttaactacaaaaaaatgtgaaaatataGAAGAGGAATCAAATAAAAGCGTTGATGTTCAGGAACAAACATCATTTTTGGACGATATTAAACCATCCGAAATATTTAATATGGAATCTCAACAACCAATAGAAAATATTACGGAATTCCTCAAGGTGGAACAATTTTCCGATCATGATGGTGATAATGATCCTCCGGAAAGCGATGATATCAGTAAAAATTCCGAAGATAATATCCAGaaTTCACCgaaagttaaaaaagaaaagaaaactccaaaatCTCATGAATGTGAAATATGTAAGAAAATTTTTGCTAAAAGATCTGGTTTAATTCGTCATATGAATGTTCATAATGCTGAAGGTAGACCGTTCGAATGTGATATTTGCAAACAACGATTTACAACAGAGAGTCTTTATAAAAGGCATTCGATTATCCACAGTGAGACGCTCACGAAACTAACAACAATAATGAAAAAGCCAGAAATATATAAATGCTCCGAGTGTCCGAGAGAATTCCAAAAACAAGAATCGTTGTCTTCTCATATGCGAACACATAAAGATGTTATGTCGAATAGGGAGTTTTCATGTGAAATATGTTCGAAAATCTTTCCCAAATTAAATTCACTAACAAGGCATATGAAAACACATGATGAAATGAAAAGACATAAATGCAatttatgtaataaaacattttctctCAGTTCACATTTGATAGATCATATGAACAGGCACAATGGTGTAAGACCGCATGTTTGTCATGTTTGCCAGAAAAgTTTTCAACATTCAGGCACATTAAAAGATCATTTAAGAACCCATAGCGGTGAAAAACCATTTCTATGTGCAGAATGTGGTAAAGCTTTCAACAATAGCGGTAATCTTCGGCAACATTTGTTACGGCATACGGGAGTTAAACGATTTCCTTGTCCGGAATGTCCTAGTAAATTTACATCGAAAGGTGGTTTAAAGTCTCACATGACAACACATACCGGCATTAAACCCCATACATGTGATGTTTGCGGATCTTCATTTACAAAAGGATATTCACTAGGGAAACATAAAAGAATTCATACAGGAGAAAAACCGTATGCATGCGAAGTTTGTGGAATGagGTTTATTTCGTCGTATTACGTTAAGCGTCATATGCGAATTCATACAGGTGAAAAACCATACAGTTGTAAGTTTTGTGATCGTGCTTTCTCTCAAAGCAATGATCTTGTTAAACATACTCGTGGACATATTGGTGAAAAAACATATCAATGTTCAGAATGTCCGGAAGCATTTCGTTTATACAATGAACTACGTATGCATAATCAAGACCATTACAAACAGCAACAAATGGCGAATGAATAA
Protein Sequence: METVLQRFENICRACMAKAAEMQCLFNPQMDSMPISKMFSLICTINISPDDGLPNTICSNCLSLLITAHDFQQMCLNSETEMRNILTSLPDYKQNEQEKFILTTKKCENIEEESNKSVDVQEQTSFLDDIKPSEIFNMESQQPIENITEFLKVEQFSDHDGDNDPPESDDISKNSEDNIQNSPKVKKEKKTPKSHECEICKKIFAKRSGLIRHMNVHNAEGRPFECDICKQRFTTESLYKRHSIIHSETLTKLTTIMKKPEIYKCSECPREFQKQESLSSHMRTHKDVMSNREFSCEICSKIFPKLNSLTRHMKTHDEMKRHKCNLCNKTFSLSSHLIDHMNRHNGVRPHVCHVCQKSFQHSGTLKDHLRTHSGEKPFLCAECGKAFNNSGNLRQHLLRHTGVKRFPCPECPSKFTSKGGLKSHMTTHTGIKPHTCDVCGSSFTKGYSLGKHKRIHTGEKPYACEVCGMRFISSYYVKRHMRIHTGEKPYSCKFCDRAFSQSNDLVKHTRGHIGEKTYQCSECPEAFRLYNELRMHNQDHYKQQQMANE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01540698;
90% Identity: iTF_01540698;
80% Identity: -