Xate026562.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:43938533-43946108[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.0012 0.089 14.1 0.2 1 23 63 85 63 85 0.98
2 31 0.0012 0.085 14.2 0.2 1 20 110 129 110 132 0.94
3 31 0.00074 0.053 14.8 2.9 1 23 138 160 138 160 0.99
4 31 7.9e-05 0.0057 17.9 1.3 1 23 173 195 173 195 0.99
5 31 0.16 12 7.4 0.4 1 21 201 221 201 221 0.97
6 31 0.019 1.4 10.4 1.0 1 23 227 249 227 249 0.99
7 31 0.026 1.9 10.0 1.6 1 23 254 276 254 276 0.98
8 31 0.013 0.95 10.9 0.5 2 23 281 302 280 302 0.91
9 31 0.041 2.9 9.4 3.8 1 23 337 359 337 359 0.97
10 31 0.007 0.5 11.8 3.0 1 23 365 387 365 387 0.94
11 31 0.11 8.3 7.9 7.0 1 23 391 414 391 414 0.95
12 31 0.0012 0.089 14.1 0.2 1 23 505 527 505 527 0.98
13 31 0.0012 0.085 14.2 0.2 1 20 552 571 552 574 0.94
14 31 0.0023 0.17 13.3 2.2 1 23 580 602 580 602 0.98
15 31 0.0008 0.058 14.7 0.8 1 23 614 636 614 636 0.99
16 31 0.12 9 7.8 0.3 1 22 640 661 640 661 0.96
17 31 0.0017 0.12 13.7 0.6 1 23 695 717 695 717 0.95
18 31 0.023 1.7 10.1 4.4 1 23 721 743 721 743 0.99
19 31 0.00031 0.023 16.0 2.4 1 23 749 771 749 771 0.98
20 31 0.0012 0.089 14.1 0.2 1 23 789 811 789 811 0.98
21 31 0.0012 0.085 14.2 0.2 1 20 836 855 836 858 0.94
22 31 0.0091 0.66 11.4 4.0 1 23 864 886 864 886 0.98
23 31 0.0043 0.31 12.4 2.2 1 23 898 920 898 920 0.98
24 31 0.027 1.9 9.9 7.1 1 21 926 946 926 949 0.95
25 31 0.14 10 7.7 4.3 1 23 952 974 952 974 0.98
26 31 6.2e-05 0.0045 18.2 2.6 1 23 981 1003 981 1003 0.98
27 31 0.0069 0.5 11.8 6.3 1 23 1007 1029 1007 1029 0.97
28 31 0.0014 0.1 14.0 5.6 1 23 1064 1086 1064 1086 0.98
29 31 0.0047 0.34 12.3 2.9 1 23 1092 1114 1092 1114 0.94
30 31 0.38 28 6.3 6.9 1 23 1118 1141 1118 1141 0.95
31 31 0.0065 0.47 11.9 4.6 1 23 1154 1177 1154 1177 0.97

Sequence Information

Coding Sequence
atgaAAACTATTTCtgagaaatatgatttttcatCGGAAAACCAATCATCGGAATTTATTTTATCggaattttcaattaaacaagaaccagaattaataatagaaaatgaatttgaGACTGAAAAGATTCAAAACTATTTACAAAAATCGGATATAACTTCAGACGATCGATTGGGATTAGTTTGGTATGATTGTGAAATATGTGAAGAACGTTTTTTAAGTCAGGAAGAtttatcatcacatattaaaaCTCATGAAAATCCAGAATTATATTATACAGCTTCAGCTAACGAAATTGAAGAGAGTCATATCAATAATGATAACAAATTCAAATGCAATGTGTGCGATCGTACTTTCGATGCAAAAGAATCTCTAGAAATACATTATCCAATACATCTAAAAGAAGGTTCTTTTCAATGTGAACAATGCCACGAATCTTTTCAATATTTACGTTACTTAATTGCACATCGTCAAACCCATATTATTAATGAAACGGATCCAGttgaattaaatgaatataaatgttatttttgtgatctttCTTTTGATACCGAAGATAATCTGTTACAACATTATCTAACACACACACGATACGGTCGTTATAAATGTGAATCTTGTATTGAATCTTTTGAATCTTATGATTCTTTACGTTTACATCGTCGATGTCCTCAAAGTCCATATAAATGTGATCGTTGCGATTCTTTATTTActacaaagaaaattttaaatgcacATCTTTTAACGCATAAAGAACAACAATTTAAATGTGAATTCTGTAGAGAATCTTTTTTATCTTTAGCTAATTTAATGACACATTATCAATATCATAAAAGTCTAAATAAATGTGATTATTGTAATTTCACCTTTACTACAAAGAGGGCTATAGAAATTCATTCTGTAATACATAAAAAAGATAATTGCGGTAAATGTAAATGTTGTAACGAATATCTTCGATCTTTAGATACTTTAGGTATATGTCGTAAATGTCGTAAAAGTCGTCAAAATCGATATAATTGTGATCGTTGTGATTGTTCCTTTACTACAAAGCAATTTTTAGATGAACATTCTTTAACACATAAACAAGAACTTCCTTTTAAATGTGAATATTGTAGTGAATCTTTTCAATCTTTAGCTAATTTAATGACACATTGTCAAAGTCATAAAACTGAATATAAATGTGATCATTGCCCTTGTACCTTTATTAAAGAAGAGTTTTTAAAAACACATTATCATCAAGGGCATACATCCAATACAGAGCTTTTCAAGAAAACTATTATTCCCTTATTAATAgaaaattggaaaaaaatggCAGAAAACATAAACGAAATGAAAACTATTTCtgagaaatatgatttttcatCGGAAAACCAATCATCGGAATTTATTTTATCGGAATtctcaattaaacaagaaccagaattaataatagaaaatgaatttgagactgaaaaaattcaaaactattTACAAAAATCGGATATAACTTCCGAAGATCGATTGGGATTAGTTTGGTATGATTGTGAAATATGTGAAGAACGTTTTTTAAGTCAGGAAGACTTATCATCGCATATTAAAACTCATGAAAATCCGGAGTTATATGATACAGCTTCAGCTAACCAAGATGAACAGAGTCATATCAATAATGATAACAAATTCAAATGCAATGTGTGTGATCGTACTTTCGATGCAAAAGAATCTCTAGAAATACATTATCCAATACATCTAAAAGAAGGTTCTTTTCAATGTGAACAATGCCACGAATCTTTTCAATATTTACGTTACTTAATTGCACATCGTGAATCCCATAATAAGAAAGAGATGCTAGTTGAATATGATGGATTTAAATGTTATTCTTGTGATCTTTCTTTTGATACCGAAGATAGCCTGGTACTACATTATCAAACGCACACACGTTTTTATAAATGTGAATCTTGCGGTGAATGGTTTGAAACTATTGATTCTTTACATATACATCGTCGTCGATGTCTGGGAATTCCATATAAATGTGATCGTTGTGATTTTTCGTGTTTTGCAAAGAAATTTTTAGATGAACATTCTTTAACACATAAAAAAGAATTGCCTTTTAAATGTGAATATTGTAGCGAATCTTTTCAATCTTTAGCTGATTTAATGACACATTCTGATAGTCATCGAAGTCCATATAAATGTGATCGTTGCAATCGATTCTATCAATCAAAGTTATTTCTAAAAAGGCATTATATAACACATGGAAAAGAACGTCCTTTTAAATGTGAATTTTGTGGCTTTAGTTCAAACCATGCATCTAATTTGTCACAACATATGgtaaaacataagaaaatccgTAAGAAAGGCATTATAACTAATCGATTGGGATTAGTTTGGTATGATTGTGAAATATGTGAAGAACGTTTTTTAAGTCAGGAAGACTTATCATCGCATATTAAAACTCATGAAAATCCGGAAAATTGTGATAGAGCTTCAGCTAACCAAGATGAACAGAGTCATATTAATAATGATAACAAATTCAAATGCAATGTGTGTGATCGTACTTTCGATGCAAAAGAATCTCTAGAAATACATTATCCAATACATCTAAAAGAAGGTTCTTTTCAATGTGAACAATGCCACGAATCTTTCcaatttttacattatttaattgCACATCGTGAATCccataataagaaaattattcaagTTGAATATGATGGATTTAAATGTTATTCTTGTCATCTTTCTTTTGATACCGTAGATAACCTGGTACTACATTATCTAACGCACACACGAGACGGTCCTTATAAATGTAAAGATTGCCGTGAatcttttaaaagttttgaTTCTTTAAGTATGCATCGTCGATGTCATCATAGTCCATATAAATGTGATCGTTGCGATTTTTCGTGTACTACAAAGCAATTTTTAGATGAACATTCTTTAACACATAAAAAAGAAGAACGTCTTTTTAAATGCAAATATTGTAGCGAATCTTTTCAATCTTTAGCTAATTTAAAGACACATTACCAAAGTCATAAAACCGAATATAAATGTGATCGTTGCGATTGCACCTTTACTACAAAGAAGTTTTTAAAAACTCATTCTGTAACACATAAAAAAGATCATTACAGTAAATGTAAATGCTGTGGCGAATGCTTTCCAATTTTAGATGCTTTAGGTATATGTCATAAATGTCGTAAAACTAGTCACTATGTATATAATTGTGGTCGTTGCGATTGCACCTTTACTACAAAGAAACTGCTACGAAAGCATTTTTTAACACATAAAAAGGAACGTCCTTATAAATGCGAATATTGTAGCGAATCTTTTCAATCTTTAGCTAATTTAATGACACATTGCCAAAGTCATACAAATGAATATAAATGTGAACATTGCGTTTGTACCTTTACTAAAGAAGTGTTTTTAAAAGCACATTATCATCAAGTGCATACAGGCAATACAAATCCTTATactaaagaaaaatcatttaaatgcaAATATTGTGATTTTACTACAAACCGAGAATGGAATTTGTCACAACATCATTTGCGAAGACATGAGACAGCCCTCTAG
Protein Sequence
MKTISEKYDFSSENQSSEFILSEFSIKQEPELIIENEFETEKIQNYLQKSDITSDDRLGLVWYDCEICEERFLSQEDLSSHIKTHENPELYYTASANEIEESHINNDNKFKCNVCDRTFDAKESLEIHYPIHLKEGSFQCEQCHESFQYLRYLIAHRQTHIINETDPVELNEYKCYFCDLSFDTEDNLLQHYLTHTRYGRYKCESCIESFESYDSLRLHRRCPQSPYKCDRCDSLFTTKKILNAHLLTHKEQQFKCEFCRESFLSLANLMTHYQYHKSLNKCDYCNFTFTTKRAIEIHSVIHKKDNCGKCKCCNEYLRSLDTLGICRKCRKSRQNRYNCDRCDCSFTTKQFLDEHSLTHKQELPFKCEYCSESFQSLANLMTHCQSHKTEYKCDHCPCTFIKEEFLKTHYHQGHTSNTELFKKTIIPLLIENWKKMAENINEMKTISEKYDFSSENQSSEFILSEFSIKQEPELIIENEFETEKIQNYLQKSDITSEDRLGLVWYDCEICEERFLSQEDLSSHIKTHENPELYDTASANQDEQSHINNDNKFKCNVCDRTFDAKESLEIHYPIHLKEGSFQCEQCHESFQYLRYLIAHRESHNKKEMLVEYDGFKCYSCDLSFDTEDSLVLHYQTHTRFYKCESCGEWFETIDSLHIHRRRCLGIPYKCDRCDFSCFAKKFLDEHSLTHKKELPFKCEYCSESFQSLADLMTHSDSHRSPYKCDRCNRFYQSKLFLKRHYITHGKERPFKCEFCGFSSNHASNLSQHMVKHKKIRKKGIITNRLGLVWYDCEICEERFLSQEDLSSHIKTHENPENCDRASANQDEQSHINNDNKFKCNVCDRTFDAKESLEIHYPIHLKEGSFQCEQCHESFQFLHYLIAHRESHNKKIIQVEYDGFKCYSCHLSFDTVDNLVLHYLTHTRDGPYKCKDCRESFKSFDSLSMHRRCHHSPYKCDRCDFSCTTKQFLDEHSLTHKKEERLFKCKYCSESFQSLANLKTHYQSHKTEYKCDRCDCTFTTKKFLKTHSVTHKKDHYSKCKCCGECFPILDALGICHKCRKTSHYVYNCGRCDCTFTTKKLLRKHFLTHKKERPYKCEYCSESFQSLANLMTHCQSHTNEYKCEHCVCTFTKEVFLKAHYHQVHTGNTNPYTKEKSFKCKYCDFTTNREWNLSQHHLRRHETAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-