Xate024748.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730484.1:6137459-6141769[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.9 2.1e+02 3.5 0.1 3 21 55 73 53 74 0.90 2 18 0.00067 0.049 15.0 3.2 1 23 242 265 242 265 0.98 3 18 0.0002 0.014 16.6 1.7 1 23 273 295 273 295 0.97 4 18 3.6e-05 0.0026 18.9 1.2 1 23 304 327 304 327 0.95 5 18 5e-06 0.00036 21.7 0.4 1 23 333 355 333 355 0.96 6 18 0.00019 0.014 16.7 0.9 1 23 361 383 361 383 0.97 7 18 0.0013 0.096 14.0 0.2 1 23 388 410 388 410 0.98 8 18 0.00018 0.013 16.8 0.4 1 23 416 438 416 438 0.98 9 18 0.0041 0.3 12.5 4.0 1 23 444 467 444 467 0.95 10 18 5.1 3.7e+02 2.7 0.3 3 20 542 559 540 561 0.81 11 18 8.6e-06 0.00063 20.9 1.3 1 23 753 776 753 776 0.98 12 18 0.0037 0.27 12.6 1.2 1 23 784 806 784 806 0.96 13 18 4.3e-05 0.0031 18.7 1.6 1 23 815 838 815 838 0.95 14 18 4.9e-06 0.00035 21.7 0.2 1 23 844 866 844 866 0.96 15 18 0.00068 0.049 14.9 2.5 1 23 872 894 872 894 0.97 16 18 6e-05 0.0043 18.3 0.3 1 23 899 921 899 921 0.98 17 18 3.4e-05 0.0024 19.0 0.4 1 23 927 949 927 949 0.98 18 18 0.0023 0.17 13.3 3.7 1 23 955 978 955 978 0.96
Sequence Information
- Coding Sequence
- ATGTTAAATTCATGGCAGCAATTTTGCCGTTTATGTGCGAAAGAAAATGGTTCCGAAGTAGATGTATTTCTGAAAAGTGAAAATGGTGCTAATTTGGCTCAAGCAattcaaaaatactttttaattacgATTAGCCCATACGAGCAGTCCCCAACAATGATTTGTACAACTTGTTACAAATCCATAACAAATTTAGTTCTTTTTGCTGAACACACAAACAAAGTTGAAGCAATGTTTACTAAAATagttttcaatgaatttaatatgatcGAGActgatataaataatttaaagtttgaatttggtttatctgaatttgtattttcatttccGGATCTTGTTCAAAAATGTGATCAAGGAACTGACACGACTGGTTTAATGCACGAAGATTCCGTGTATATTAGTGATAACGTTAAAAGAGctataaaaacaagaaagagTTCCAGCGAAGACAATACACCAAGTATAAGCCCCAGAAAAAGAAAACAGGTAcaaaataatgatgaaatttCGGGTAAAAAATCAGATCtttgtataaataaatttgaagatgAGAAAGATCAATCAGCGAATGAGGATGATAATATAGGTGatgattttcatgaaataaaGGATGAAAGCGTCGACACTGAAAATGAATCAGAGAAGAGTTGTTGGAAACCAATTAAGAAGCGTACGAAAAGAATCAGGAAAGTaagcaaaatcaaaaagataGATGAACAATTTCAATGCGATAAATGCGCAAGAATTTTCAAACGGGAATGCTCACTTGAACAACACATCAAGAAATCTCATTCATCAGACGAACCGCAAACGTATTCGTGTACGAAATGTGAAAAGGTGTTTCAAAACAAAAAGAGATTACAACGGCATGAAATTGTCCATTTGCCACCTGAATTAAAGTTTAAACATTCATGTTTGTATTGCGATAAGAAATTTTCAACATCTACGAATGCTCAAGCTCATATTAGAGCTATTCATATTGGAGATAAGCCATTTGTTTGTGAAGAATGTGGAAAAGCATTCAAAACAAACGGTACTTTAAAAGAACACAAATATATCCATGTAGAAGATACGCctttcgaatgtcaaaaatgcCCCAAAAAATTCAAGACTATGGTTCTTTTAAAAatacatGAGGACACACATAATGACACTATATACACTTGTCCAGAATGTGGTcttaaattgaatacaaaacgAATATTACGCAGGCATATGGTTGTTCATTctgatcaaaaaaaatacaaatgtgATTACTGTGGAAACGAGTATAAGCGAGTGAAAGCTCTAAAAAATCATTTGATAATTCACACTGGTCTGAGACCATACACATGTCCATTCTGTGATAAAACCTTTgcaaatggttcaaattgccggaaacataaaaaattatcacatcCAGTTGAACTAGCTGCAATGGAAGCTTCAGGTGAAGTGCAACCTGCCACAAACATTCCAAAATTATCACAATTGAGGATTGCacCTGCTATATCAGATTCAATATCGCTATCAGAACATATAACAAATAGTACATCTAATATATCTGACACCTCGCATTACATGAATCAGCCGGCATCCTCTACAATCATTAGCCCGTACGAGCAGTCTCCAACGATGATTTGTACAACTTGTTATAAATCTCTCAcgaatttaattctttttgatCAACACACATCCAAAGTTGAAGCAATGTTTGCTAAAGTAATGTTcaatgaatttaatatgatcACGACtgatataaataatttgaaatttgaacacGGTTTATCTGAAATTGTATTTTCATTTCCATATATTCAAAAATGTGATCAAACAACTAATACAAATGatatattgaatgaaaatttcggAAATATTGACAACGTTGAAAAAGATGTGAAAACTAATATAAGTTTTAACGAGACCATTACGAACCAAAGTAAAAGATcaagaaaacgaaaacaaaatgaCGAAGATCAGTCCATAATTGAAATTAAACCATTGAATGATCCGAAATTATCAAGATCTAAAGAATTACTTCAAAATGAATCAACAGATGAAGgtgaaaattttataagtgaagatttacttgaagtgAAATGCGAAAATGTAGATACTGATAATGACTCTGAACAAAGTGATACAAAACCGATCAAAAAACGTTCGAAAAGAATTAGGAATGTCAAGGAAATCAATATCGAATATGAATCTGAAGAAGATGATAAAAAACCGGTTAAAATAAGGtcgaaaaaaatgaagaaagttGCCGAACAATTTCAGTGTGATAAATGCGCTAAAATTTTTAAGCGCGAATCTTCACTCGAACAACACATCAAGAAATCTCATTCTACAGACGAGCAGCAATCATATTCATgcacaaaatgtgaaaaagagTTCCAAGataaaaaacgattaaaattaCATGAAGCTGTTCATTTGCCACCTGAATTGAAGTTTAAACATTCATGTTTGTATTGCGATAAGAAATTTTCCAAATCGACAAATGTTCAAGCTCATATTAGAGCCATTCATATTGGAGATAAATCATTTGTTTGTGAAGAATGTGGTAAAGCATTCAAAACAAACGGAGCCCTAAAAGAGCATAAATATGTGCATGTAGAGGATACACCTTTTGAATGTCGAAAATGTCCCAAAAAGTTCAAAACTATggtatttttaaaaAGACATGAAGATACTCATGATGACACATTTTACACTTGCCCAGAATGTGGACTAAAATTAAACACTAAACGAACATTACAAAGTCATATGGTTGTTCATTctgatcaaaaaaaatacaaatgtgATTACTGCGGAAATGAATATAAACGAGCAAAAGCTCTTAAAAATCATTTGATTATTCATACTGGCCTGAGACCTTACACATGTCCGTTCTGTGATAAAACATTTGCAAATGGTTCCAATTGTCggaaacatacaaaattatcaCATCCAGTTGAATTGGCTGCAATGGAAGCAGCTGGAGAGGTGCTACCACAAACCAACATTCCAAAGTTATCGCAATTAAAAACAGTACCTGTTATACGGGATTCAGTATCATTATCTGAACACATTGCAAAAAATACTtcatcaaatatttaa
- Protein Sequence
- MLNSWQQFCRLCAKENGSEVDVFLKSENGANLAQAIQKYFLITISPYEQSPTMICTTCYKSITNLVLFAEHTNKVEAMFTKIVFNEFNMIETDINNLKFEFGLSEFVFSFPDLVQKCDQGTDTTGLMHEDSVYISDNVKRAIKTRKSSSEDNTPSISPRKRKQVQNNDEISGKKSDLCINKFEDEKDQSANEDDNIGDDFHEIKDESVDTENESEKSCWKPIKKRTKRIRKVSKIKKIDEQFQCDKCARIFKRECSLEQHIKKSHSSDEPQTYSCTKCEKVFQNKKRLQRHEIVHLPPELKFKHSCLYCDKKFSTSTNAQAHIRAIHIGDKPFVCEECGKAFKTNGTLKEHKYIHVEDTPFECQKCPKKFKTMVLLKIHEDTHNDTIYTCPECGLKLNTKRILRRHMVVHSDQKKYKCDYCGNEYKRVKALKNHLIIHTGLRPYTCPFCDKTFANGSNCRKHKKLSHPVELAAMEASGEVQPATNIPKLSQLRIAPAISDSISLSEHITNSTSNISDTSHYMNQPASSTIISPYEQSPTMICTTCYKSLTNLILFDQHTSKVEAMFAKVMFNEFNMITTDINNLKFEHGLSEIVFSFPYIQKCDQTTNTNDILNENFGNIDNVEKDVKTNISFNETITNQSKRSRKRKQNDEDQSIIEIKPLNDPKLSRSKELLQNESTDEGENFISEDLLEVKCENVDTDNDSEQSDTKPIKKRSKRIRNVKEINIEYESEEDDKKPVKIRSKKMKKVAEQFQCDKCAKIFKRESSLEQHIKKSHSTDEQQSYSCTKCEKEFQDKKRLKLHEAVHLPPELKFKHSCLYCDKKFSKSTNVQAHIRAIHIGDKSFVCEECGKAFKTNGALKEHKYVHVEDTPFECRKCPKKFKTMVFLKRHEDTHDDTFYTCPECGLKLNTKRTLQSHMVVHSDQKKYKCDYCGNEYKRAKALKNHLIIHTGLRPYTCPFCDKTFANGSNCRKHTKLSHPVELAAMEAAGEVLPQTNIPKLSQLKTVPVIRDSVSLSEHIAKNTSSNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -