Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730479.1:46960026-46961867[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.2 15 7.2 0.7 1 23 64 86 64 86 0.95

2 18 1.5e-05 0.0011 20.1 0.5 1 23 110 132 110 132 0.98

3 18 5.8e-06 0.00042 21.4 4.0 1 23 138 161 138 161 0.98

4 18 0.0025 0.18 13.1 4.2 1 23 167 189 167 189 0.99

5 18 4.8e-06 0.00035 21.7 1.6 1 23 206 228 206 228 0.99

6 18 0.18 13 7.3 5.5 1 23 233 255 233 255 0.98

7 18 3.3e-05 0.0024 19.1 2.6 1 23 261 283 261 283 0.98

8 18 4.2e-06 0.00031 21.9 1.6 1 23 290 312 290 312 0.99

9 18 0.00031 0.023 16.0 4.1 1 21 318 338 318 340 0.96

10 18 9.8e-05 0.0071 17.6 5.7 1 23 346 368 346 368 0.98

11 18 3.3e-07 2.4e-05 25.4 0.8 1 23 374 396 374 396 0.99

12 18 0.00099 0.072 14.4 1.8 1 23 407 429 407 429 0.97

13 18 7e-06 0.00051 21.2 1.3 1 23 433 455 433 455 0.99

14 18 1.4e-06 9.8e-05 23.4 2.2 1 23 461 483 461 483 0.98

15 18 8.6e-06 0.00063 20.9 3.3 1 23 489 511 489 511 0.98

16 18 0.00024 0.018 16.3 0.4 2 23 518 539 517 539 0.97

17 18 0.023 1.7 10.1 4.6 1 23 545 567 545 567 0.98

18 18 4.1e-05 0.003 18.8 2.8 1 21 569 589 569 590 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.2	15	7.2	0.7	1	23	64	86	64	86	0.95
2	18	1.5e-05	0.0011	20.1	0.5	1	23	110	132	110	132	0.98
3	18	5.8e-06	0.00042	21.4	4.0	1	23	138	161	138	161	0.98
4	18	0.0025	0.18	13.1	4.2	1	23	167	189	167	189	0.99
5	18	4.8e-06	0.00035	21.7	1.6	1	23	206	228	206	228	0.99
6	18	0.18	13	7.3	5.5	1	23	233	255	233	255	0.98
7	18	3.3e-05	0.0024	19.1	2.6	1	23	261	283	261	283	0.98
8	18	4.2e-06	0.00031	21.9	1.6	1	23	290	312	290	312	0.99
9	18	0.00031	0.023	16.0	4.1	1	21	318	338	318	340	0.96
10	18	9.8e-05	0.0071	17.6	5.7	1	23	346	368	346	368	0.98
11	18	3.3e-07	2.4e-05	25.4	0.8	1	23	374	396	374	396	0.99
12	18	0.00099	0.072	14.4	1.8	1	23	407	429	407	429	0.97
13	18	7e-06	0.00051	21.2	1.3	1	23	433	455	433	455	0.99
14	18	1.4e-06	9.8e-05	23.4	2.2	1	23	461	483	461	483	0.98
15	18	8.6e-06	0.00063	20.9	3.3	1	23	489	511	489	511	0.98
16	18	0.00024	0.018	16.3	0.4	2	23	518	539	517	539	0.97
17	18	0.023	1.7	10.1	4.6	1	23	545	567	545	567	0.98
18	18	4.1e-05	0.003	18.8	2.8	1	21	569	589	569	590	0.95

Sequence Information

Coding Sequence: ATGGAAGAAAACATTTTAGAGATTCAAACTTATTTCTTGACAGAAAAGGAACAAGCACAAGAAATTCAATCCTATGAGTTTAtttcatcaaaagttttaattaaagaGGAACCAGAATTAATATTAGAAAATGATCTTGTGACAGAAAATATCGATATAGCTCGAGAAGAtcgattaaatttaatttggtataATTGTCAAAACTGTGATGAACGTTTTTTAAGTACACAAGATTTATTATTGCACGAAAAAAATCATACAAATATTGATCGTTGTCCATCTTCCGAAATTCAAGATGAAGCACCAAAAAGGCATTGCgataaattttttgaatgtAACAAATGTGAAGAGTTCTTTGTATTTGCAGATAATTTAAGAATACATCGTCgtattcatataaataaaaaaggatataaatgtaaatattgTGATTTCATCACAAGAAGATCAgatcatttaaaaattcatatgcGAAAGATACATACTGGAGTGAAAGTATTTAAATGTAGTCGCTGTAAAAGTACATTTAGTAAAAGGAAACTTTTAGTTATTCATTATCGAAAGCATCGAGTTTATCGACAACCTGTTGATAGTCGAAAGCTTGGCGAAAAGAAATACAAATGTTCAAATTGTGATAGAAAGTTTATTGAAAAATCACGTTTAGCTCGACATATGAGAGAACatggtgaaaaaccatttaaatgtgatcgtTGCAAAAGTTCATTTTGTAAAAAGGATCGTCTAGATGTTCACTATCTTAAACATATCGGTGATTTTTCTTATCAATGTTCGAATTGTGATAAAAAATTTACACGTAAAAGTGTACGTGATCGACATATGCGAGGTCATAATACTGAAgataaaccatttaaatgtgatcgtTGCGATTATTCGTTTGTTGATAAGTATCTACTGGAAATACATTATCGAAAACATACTGGTGTAAATCCTTATAAATGTTCTCGTTGTGAGAAAACATTTCCACGGTATAATGCTCTTCAAAGGCATATCAAATGTCATACTGGTGACAAAGAACATAAATGTGATCGCTGCGATCGTCAATTTTCTGATAAAACTCATCTAGTAACACATTATCGAATTCATACTGGTGAACGACCTTTTAGATGTTCACAATGTGATAAAGGATTTGTACGTAAAAGTGCTCTTGATAGGCATATGGAAACTCATACCGGGAGGTCATTACCTGAAGGTAGTCTTTATGCATGCCCACATTGTGATAAGAAAATGAAACGAAAACAATATCTAGATAATCATTTATTAATTCATGCGAGAAATTACAAATGTACCTATTGCGTACGTTCATATATTACACAGAAAGATTTGGAAATACATCTTCGACGACATAGTAATGAACGTCCTTATCAATGCcctaaatgcaataaaaaatttaaaagaagtattaattttgaaaagcaTGTAAATGAACATTCTGCCGAGAAACTATTTAAATGTGATCATTGCGATAAATCATTTAGTCAAGAGAAAAAGCTAGAAGTACATAGTCGATTGCATCTAacgaattatataattaaatgtCCTTATTGTCCTCGGAAATTTAAAAAGGACGGTGGTATCGAAAGGCATATGAGTAAACATCCCGGAAAGAAACTATTTAAATGCGATCGCTGTACTAGTACATTTCGTAAAGATAAACAACTAAAAACACATTCTCGATCACATACTTATGATTGTACGAAATGTGATAGGAAATTTAAACGAAATgctaattttgaaaaacatatttGTGAATCTATAGAAGAGAATCTCGTCAAATCTAATTCCGACGACCAAGTAGAGATTAATTCTAACAAAAACTTATAA
Protein Sequence: MEENILEIQTYFLTEKEQAQEIQSYEFISSKVLIKEEPELILENDLVTENIDIAREDRLNLIWYNCQNCDERFLSTQDLLLHEKNHTNIDRCPSSEIQDEAPKRHCDKFFECNKCEEFFVFADNLRIHRRIHINKKGYKCKYCDFITRRSDHLKIHMRKIHTGVKVFKCSRCKSTFSKRKLLVIHYRKHRVYRQPVDSRKLGEKKYKCSNCDRKFIEKSRLARHMREHGEKPFKCDRCKSSFCKKDRLDVHYLKHIGDFSYQCSNCDKKFTRKSVRDRHMRGHNTEDKPFKCDRCDYSFVDKYLLEIHYRKHTGVNPYKCSRCEKTFPRYNALQRHIKCHTGDKEHKCDRCDRQFSDKTHLVTHYRIHTGERPFRCSQCDKGFVRKSALDRHMETHTGRSLPEGSLYACPHCDKKMKRKQYLDNHLLIHARNYKCTYCVRSYITQKDLEIHLRRHSNERPYQCPKCNKKFKRSINFEKHVNEHSAEKLFKCDHCDKSFSQEKKLEVHSRLHLTNYIIKCPYCPRKFKKDGGIERHMSKHPGKKLFKCDRCTSTFRKDKQLKTHSRSHTYDCTKCDRKFKRNANFEKHICESIEENLVKSNSDDQVEINSNKNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -