Xate026634.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:45302374-45304032[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.2 15 7.2 2.0 1 23 65 87 65 87 0.96
2 16 2.6e-05 0.0019 19.4 4.8 1 23 124 146 124 146 0.99
3 16 5.2e-06 0.00038 21.6 5.2 1 23 152 174 152 174 0.99
4 16 0.00042 0.031 15.6 1.4 1 23 180 203 180 203 0.96
5 16 5 3.7e+02 2.8 0.0 11 23 225 237 221 237 0.89
6 16 1.5e-06 0.00011 23.3 1.6 1 23 243 265 243 265 0.97
7 16 1.3e-06 9.4e-05 23.5 0.7 1 23 271 293 271 293 0.99
8 16 1.8e-06 0.00013 23.0 0.5 1 23 299 321 299 321 0.98
9 16 3.2e-05 0.0024 19.1 2.2 1 23 327 349 327 349 0.99
10 16 9e-07 6.5e-05 24.0 2.0 1 23 355 377 355 377 0.99
11 16 2.1e-05 0.0015 19.7 1.2 1 23 383 405 383 405 0.98
12 16 3.3e-06 0.00024 22.2 3.2 1 23 411 433 411 433 0.99
13 16 0.00021 0.015 16.5 2.5 1 23 439 461 439 461 0.99
14 16 9e-07 6.5e-05 24.0 1.4 1 23 467 489 467 489 0.98
15 16 9.3e-07 6.8e-05 23.9 1.2 1 23 495 517 495 517 0.98
16 16 3.3e-05 0.0024 19.1 1.9 1 23 523 545 523 545 0.97

Sequence Information

Coding Sequence
atggcAGAAGAATTTTTGGAAATGGAAACATTTCTATATGCGGACGAAACTCAAtctgattttattttaacagaaattgcaattaaacaagaaccggaCTTAATTATAGAGGACGAACtggaaactgaaaaaattcgtaaatatttacataaaaacgaTATAACTGAAGAAGATCGAATTAATTTGATTTGGCATAGTTGTCTAATATGCGACGAGCGTTTCTTAAGTGTCGAGGATTTATCATTGCACCACCGAAATCACCGAAATATTGAAGAAACTTCAACGAGTTCTTTGAATTACAGTGAATCACATGCTAATAACAATTTACGTCAGCAATCCCATATAAAAATGAATACTaaagaaaaaccatataaatgcgATCGTTGCGATTGTTCTTATACGACAAGTAGTCATCTTGCAGTTCATTATCGAATACATACTGGTGAGTCTCCTTACAAATGTCATCATTGTGATAAAGCATTTATACGAGGTGATTATCTTAAAAGGCATTTAACGACACATTctaaagaaaaaccatttaaatgcgatCGTTGCAATCGTTCATATATTGATAAACGTCAATTATCAGAACATTATGATCGAATTCATTCCGGGAGACTTTTAAATATTGCCGAAAAACGATTTAAATGTGATCTTAGCGATAGTTCATCTGCTAACAAGAGTGAATTAGTTGTACATTATCGAGCACATACTGGCGAACGACCGTATAAATgtcaattttgtgataaaacaTTTATCCGAAATGCTGATCTGCGGAGACATAAAATGgcacatactggtgaaaaaccatttaaatgcgatATTTGCGATTTTGCATTTATTAGAAACAGTAGCCTAGTAATGCATTACCGAACACATACCGGTGAACGGCCCTACAAATGTCAAACTTGTGATAAAACATTTATCGGAAATGCTGATCTGCGAAGACATCAAATGgcacatactggtgaaaaaccattcaaatgcgatcttTGCGATTGCTCATATACTGAGAAGGGAAACTTAGTTATACATTATCGAACTCATACTGGCGAACGACCTTACAAATGTCATCTTTGTGATGAGGCATTTATACGAAATGATTATCTGCTAAAACATCAAATGacacatactggtgaaaaaccattcaaatgtgacctTTGCAATTTATCATATTCTGATAAAAGTTCGTTAATAGAACATAATCGAAAACATAACGGTGAACTTCCTTACAAATGTCAAAATTGTGATAAAACATTTATACATATTAAATCTCTTCGAAGGCATATACAAATtcatacttttaaaaaatcatataaatgcGATCTTTGCGATTGTTCATATACTGAGAAGGGAACCTTAGTAGTACATTATCGAAAGCATACTGGCGAACGACCGTATAAATGCCATCTTTGTGATGAAGCATTTATACGAAATGATTATCTGCAAAGACATCAAATGGCGCATACTGCTGAGAAaacattcaaatgtgatcaatgcgatcgttcatttattGACAAGAGTCAGTTAATAGTACATAATCGAAAACATAACGGCAAACGTCCTTACAAATGTCAATATTGTGATAAATCATTTACACGAATTAAACCTCTTGAAAGTCATAAACAACTTCATATTGacgagaaaccatttaaatga
Protein Sequence
MAEEFLEMETFLYADETQSDFILTEIAIKQEPDLIIEDELETEKIRKYLHKNDITEEDRINLIWHSCLICDERFLSVEDLSLHHRNHRNIEETSTSSLNYSESHANNNLRQQSHIKMNTKEKPYKCDRCDCSYTTSSHLAVHYRIHTGESPYKCHHCDKAFIRGDYLKRHLTTHSKEKPFKCDRCNRSYIDKRQLSEHYDRIHSGRLLNIAEKRFKCDLSDSSSANKSELVVHYRAHTGERPYKCQFCDKTFIRNADLRRHKMAHTGEKPFKCDICDFAFIRNSSLVMHYRTHTGERPYKCQTCDKTFIGNADLRRHQMAHTGEKPFKCDLCDCSYTEKGNLVIHYRTHTGERPYKCHLCDEAFIRNDYLLKHQMTHTGEKPFKCDLCNLSYSDKSSLIEHNRKHNGELPYKCQNCDKTFIHIKSLRRHIQIHTFKKSYKCDLCDCSYTEKGTLVVHYRKHTGERPYKCHLCDEAFIRNDYLQRHQMAHTAEKTFKCDQCDRSFIDKSQLIVHNRKHNGKRPYKCQYCDKSFTRIKPLESHKQLHIDEKPFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-