Xate026709.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:46713317-46717906[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.4 2.5e+02 3.3 0.2 1 21 66 86 66 90 0.84
2 16 0.0044 0.32 12.4 0.5 1 23 111 133 111 133 0.98
3 16 1.1e-06 8.3e-05 23.7 0.7 1 21 139 159 139 160 0.96
4 16 2.9e-05 0.0021 19.2 4.9 1 23 167 189 167 189 0.98
5 16 1.5e-06 0.00011 23.3 0.9 1 23 195 217 195 217 0.98
6 16 0.00048 0.035 15.4 6.0 1 23 223 245 223 245 0.98
7 16 2.6e-05 0.0019 19.4 2.6 1 23 251 273 251 273 0.99
8 16 0.15 11 7.6 0.2 2 23 346 367 346 367 0.96
9 16 2e-06 0.00014 22.9 0.8 1 23 390 412 390 412 0.99
10 16 6.2e-09 4.5e-07 30.8 2.1 1 23 418 440 418 440 0.99
11 16 3.4e-07 2.5e-05 25.3 1.2 1 23 446 468 446 468 0.99
12 16 1.6e-06 0.00012 23.2 1.7 1 23 474 496 474 496 0.99
13 16 9.1e-08 6.6e-06 27.1 2.2 1 23 502 524 502 524 0.99
14 16 5.9e-06 0.00043 21.4 0.6 1 23 530 552 530 552 0.99
15 16 1.3e-05 0.00096 20.3 3.5 1 23 558 580 558 580 0.99
16 16 2.9e-06 0.00021 22.4 4.5 1 23 586 608 586 608 0.99

Sequence Information

Coding Sequence
ATGGCTGAAGACGAAACTAGTCTACTGGTTGAAATGTACAGTGAGAAATACGAATCATCAGAATTTCTATTAACGGACGTTTTTATTAAAGAGGAACCAGAActaattattgaagatgaacttgaaactgaaaaaattcgtaaatatttaaataaaaacgataTAACTGAGGACgatcgattaaatttgatttggcataGTTGTGCAATATGTGAAGAACGGTTTTTAAGCATCGAAGATTTATCATTACATGTTCAAAATTATGGACATTCTGAATTTGGTACATTTTCTCAAAATACGATGGATGAAGTTTCAcaatctaaagaaaatttccaatgTTCGGAATGTGAGGAAGTATGCAGTACCAAAGAAATTCTAGATATTCATCTCAGAATTCATACTGAAGATAAACTGTTCAAATGTAACCactgcgatcgttcatttataGAAAATAGTAATCTACAAgctcatttaaaaatatatactgGTGAAGAACTGTTCACTTGCGACTTCTGCTATAGATCATTTGCACAGAAATGTAATCTTAAAAAGCACATTATGATGCATACTAAAGAAGACTCATTCAAATGTAACTATTGCGATCTTTCATTTGCATATAATTATGATCTTCGAAACCATATAAGCATTCATACTGGAGAAAAATCATTCAAATGCAAATATTGCGATAAGTCATTTACACAATTAAATAGTCATAAAAAACATGTAATGACGCATACTGAAGAAAAACTCTTCAAATGTGGCCATTGCGATTATTCATCTGCACAAAAAAGTAGTTTTGAAAGCCATATGCTGACACATACTGgaaaaaaaccattcaaatCAGAAGGAATGTCGCAAATCAAAAATGTCTTATTTCCTGAAAAAGGTGGATCATCTGAGTTCATTTTAACggaattttcaattaaacaagaaccagaaTTACTAATTGAAGATGAACTTGAAACTGACAAAATTCCTAAAGATTCACACAAAAAAGATATAACTCCAgaagatcgattaaatttgGTTTGGCCTAGTTGTACAATGTGTGAAGAACGATTTTTAACAACCGAAGATTTAGAATTGCACATTGAAAATCACGAAAATTCTGGATTTAATGAGTTTCATCAAAATATGATGgatgaagattcaaaaattgaaaagaatttccAATGTTCGCAATGTGAAAAAGTATTTGCTTACAAACAGAATCTTGTTACCCATCTAAGGATTCATACCGGCGataaaccattcaaatgcgatcactgTGATCGTCCATTTGCACGGAGTAGTAATCTTCAAATCCACATGAGGacacatactggtgaaaaaccatacAAATGTGATTACTGTGAACGTTCCTTTGCACAAAATAAAAGTCTTCAAATTCATGTACGAacacatactggtgaaaaaccatataaatgcgACTATTGTGACCTTTCATTTACTGTGAGTAATACTCTTCGATATCATATAAGGACACACACTGGAGAAAAACCGTACAAATGTAATCATTGTGATCGTTCCTTTGCAAGAAATAATGGTCTTCAAATTCATATTCGGACACATACTGGTGAAagaccatttaaatgtgatcaatGTGATTCTTCTTTTGCACAAAATAGTACTCTTCGAGATCATGTCCGGGTACATACTGGTGAAAGACCATTTAAGTGTGATCATTGCAATTCTTCCTTTGCACAAAAAAGTACTCTTCGAGATCATACAAGAATACATACTGGTGAGAGACCATTTAAATGTCACCtttgcgatcgttcatttgcgCATAGTAATAGTCTGCAAATTCATGTGAGGACACATACTGCTAAGTGTATAGTTACAACAAAATCAGTAGCATGA
Protein Sequence
MAEDETSLLVEMYSEKYESSEFLLTDVFIKEEPELIIEDELETEKIRKYLNKNDITEDDRLNLIWHSCAICEERFLSIEDLSLHVQNYGHSEFGTFSQNTMDEVSQSKENFQCSECEEVCSTKEILDIHLRIHTEDKLFKCNHCDRSFIENSNLQAHLKIYTGEELFTCDFCYRSFAQKCNLKKHIMMHTKEDSFKCNYCDLSFAYNYDLRNHISIHTGEKSFKCKYCDKSFTQLNSHKKHVMTHTEEKLFKCGHCDYSSAQKSSFESHMLTHTGKKPFKSEGMSQIKNVLFPEKGGSSEFILTEFSIKQEPELLIEDELETDKIPKDSHKKDITPEDRLNLVWPSCTMCEERFLTTEDLELHIENHENSGFNEFHQNMMDEDSKIEKNFQCSQCEKVFAYKQNLVTHLRIHTGDKPFKCDHCDRPFARSSNLQIHMRTHTGEKPYKCDYCERSFAQNKSLQIHVRTHTGEKPYKCDYCDLSFTVSNTLRYHIRTHTGEKPYKCNHCDRSFARNNGLQIHIRTHTGERPFKCDQCDSSFAQNSTLRDHVRVHTGERPFKCDHCNSSFAQKSTLRDHTRIHTGERPFKCHLCDRSFAHSNSLQIHVRTHTAKCIVTTKSVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-