Xate026649.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:45615896-45623988[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.4 1e+02 4.5 1.9 6 23 106 123 106 123 0.99
2 26 3.7e-05 0.0027 18.9 4.1 1 23 129 151 129 152 0.96
3 26 0.00013 0.0097 17.2 1.7 1 23 160 182 160 182 0.99
4 26 0.0012 0.084 14.2 5.8 1 23 190 213 190 213 0.96
5 26 0.0076 0.55 11.6 0.5 1 23 219 241 219 241 0.96
6 26 0.12 8.4 7.9 0.6 2 23 250 271 249 271 0.97
7 26 1.1e-05 0.00078 20.6 0.7 1 23 278 301 278 301 0.95
8 26 1.7e-06 0.00013 23.1 1.5 1 23 307 329 307 329 0.99
9 26 3e-05 0.0022 19.2 4.3 1 23 335 358 335 358 0.98
10 26 5.2e-06 0.00038 21.6 3.7 1 23 523 545 523 545 0.97
11 26 8.2e-06 0.0006 21.0 0.7 1 23 551 573 551 573 0.97
12 26 1.4e-05 0.001 20.3 2.1 1 23 581 604 581 604 0.97
13 26 0.005 0.36 12.2 0.9 3 23 612 632 611 632 0.97
14 26 0.018 1.3 10.4 2.8 2 23 641 662 640 662 0.97
15 26 4.2e-05 0.0031 18.7 0.4 2 23 669 691 668 691 0.95
16 26 0.15 11 7.6 0.2 1 23 697 719 697 719 0.96
17 26 3.3e-06 0.00024 22.2 3.3 1 23 725 748 725 748 0.98
18 26 0.12 8.5 7.9 0.6 2 23 882 904 881 904 0.96
19 26 0.00098 0.071 14.4 7.1 1 23 936 958 936 958 0.99
20 26 0.002 0.14 13.5 3.2 1 23 966 988 966 988 0.95
21 26 0.00037 0.027 15.8 4.7 1 23 996 1019 996 1019 0.97
22 26 0.013 0.92 10.9 0.9 3 23 1027 1047 1026 1047 0.97
23 26 0.025 1.8 10.0 1.5 2 23 1056 1078 1055 1078 0.95
24 26 0.0025 0.18 13.2 0.0 1 23 1084 1107 1084 1107 0.96
25 26 0.00023 0.016 16.4 0.2 1 23 1113 1135 1113 1135 0.99
26 26 3.9e-05 0.0028 18.8 1.6 1 23 1141 1164 1141 1164 0.97

Sequence Information

Coding Sequence
atgcGTAAGAATTCAccgaaaaaattattaaaatccaCTAACTCCACAGATACTGAGTCGGATaagaatgatgatgatgatgataaaaatGAAGAAGATCCAAACGTGGAAGagaatttaattgataaaattgataatgatggaaaatcaaaaaaatctgaATCCGAATTTGTTCGTAAATCAAAAGAAGATGATGAAGAAATCGCAAAATTTATGAAACTGAAATGTGATTTTTGTTCAGatgaatttattatattcgCTGAAATTAAACGCCATTATAGAATTCAGCATAATATGAAAGGATACGTGATTTGTTGTAgtaaaaaattccataaacgtgtATATCTTTTAGATCATGTACGAATGCACGTAAATCCAGAATGTTTTAAgtGTTACGAGTGTAATAAAACTTTTAGAGATAGACGAGGTCTACAAACTCATATTTTATATCATCATGAGTCCGAAGATAATAAAATCTATAAATGTGATCAGTGTCCAAAAAGTTATGCAAAACTATATACATTGAATTATCATAAAAGAATTCATATAGCAAAAGAGGAGAGACATTTTTATTGTGAattatgtcaaaaatcATTTGCAACATATCATACATTACTCAAACATCGCCGTCATATTCATGAGAATTTCGAAGGACATATGTGTGATATTTGTGCACGTGTAATACGTGATAAAGGTGCatttaaaaatcatatgttACAACACACTGGTATTGTGGAACCAAAAATTCAATGTAAAGAATGTGGAATTtggttaaaaaatatttatagttttcgTAAACATGTTAAACGACATGCTGAAATTTCCGATGAACATGTTTGTAATGTTTGTGGTAAAGTTACACCAACAAAAAGTCTACTACAACGTCATGTTAAATATGTTCATTCACTTGAAAGAACATTTAAATGTAGTCTTTGTCCGAAAGCATTTAAAAGAtcattgaatttaaaaGAACATATGACAACCCATACGGGTGAAGTACTTTATACATGTCCACATTGTCCAAAAACATTTAATTCAAATGCAAATATGCATTCGCATCGGAAAAAAGCACATCCAAAAGAATGGGAAGAAGGACGTCGTCAACGTTTAGGATTTGAAATTATACTGGATATAAATTATGATGAATCCCAATTAGAACTACAGCAACAATCAACATCAAAACGATTAACACGAAGTTCTCATAATTTAGTATCCAACAATGAAAGTAATCTAACAGGCCGAGTTAattataatgataatgatgaaagtgattttaatgatgaaaattcaaaaagaaaatttattaaaaattttaaaagaaaaacgaagaaTTCGAAATCTAAATCAGAAACAGTTTGTAATATTAAGAAAAACGATGAAGAAATCGCTAATTTCATGAAATTGAAATGTCATCTTTGTATAGACGAATTTAAGACTTTCACTGAAATTACACATCATTATAGAAGTAAACATAACAGAAGAGGATATATTGTTTGTTGTAATAAAAAGTTATTTGAACGTGCAAGCGTTTTAGATCATGTTCGAATGCATTTAAATCCAGATTACTTTAAATGTAATGATTGCAATAAAACATTTGCGGATAAAAAATGCCTAAGAAGTCATATGTTAGGACATGAATCTGAGAAAATGTTTAAATGTGATCAATGTCCAAAAACGTTTGCCAGACAGTATGGTCTAACAACTCATAAAGCAGTTCATGTGCCACCAGAAGAAAGAACTTTTTATTGTGAGCTATGTAAAAAATCatTTTCAACAAACAAAGTTTTACAAAATCATCAACGTTCTGTTCATGAAAATGATTATGCAAAAATTTGTCATATTTGTGCTAAAGTGATACGTGATAAGACCTCATTTAATAATCATATATTAATGCATACTGGTATTGTGGAACCAAAACTTCAATGTGAAGAATGTGGTAGTTGGTTGAAGAATCGTCATAGCttaaaaaaacatatgaaaaaaCATACAGAAATATCGAATCTTGTTTGTAGTATTTGTAGTAAAGTGTTTACAACAAAGCCGGGATATCAAACTCATATGAAAAATGTTCATTCACTTGAGAGAACTTTTAAATGTATCTTATGTCCGAAAGCATTTAAAAAAGCACtaattttaaaaGAACATATGGCAACACATACCGGTGAAGCACTTTATACATGTCCACATTGTCCAAAATCATTTAATTCAAATGCAAATTTGTATACGCATCGTAAAAGTTTTCATCCAAAAGAATGGGAAGAAGGACGTCGACAACAAATAAGACTTAAAACAAATACTGAAGAAACATTATTGTTAGAAGAACAGTCATCAAGAAGATTAACCCGAAGTTCATATAATTTTGTAAATCAACAATTTTCAAAAGACAAAAATCTTCTAATAAAAAGACGAGGAAATAGGAAAAAGTTTCCTAAAAAATCTCAAGAAATTCAAAAGTTTAAACCGAAAAGATTATTAAAAACTATTGAAAATTCGTATatgaatgaaattgaaaatataaattcaaatagtAATAATTTGGATGAAAATCCTGCTGgccaaaaacgaaaaacaatgAAAACTGAATCAGAATATGTTCGCAAATCAAAAGAATACGATGAAGAAATTGCTAATTTCATGaaattgaaatgtaatctttgtATAGAAGAATTTAAGACATTCGCTGAAGTTAAAAAACATTACCGAATTAATCATAATACAACTGGATATGTTGTTTGTTGTAATAAGAAATTACTTAAACGTGTACTTATTTTAGAGCATGTACGAATGCACTTAAATccagattattttaagtgtcatgaatgtaataaaacatttttagatAGAAAATGTTTACAATCTCATATGTTAACTCATGAATCtgatgatataaaaattttcaaatgtgaTCTATGTCCAAAAAAATTCTCAAGACAATATGCATTAGAGTGTCATAAAGAAATGCATGTACCATCAGAAGAGAGAAATTTTTGTTGCGAATTATGTAAAAAATCaTTTGCATCAAAAAGAACTTTACAATATCATCGACGTTCTGTTCATGAAAATGATTATGCAAAAATTTGTCATATTTGTGCTAAAGTTCTACGTGATAAATATTCATTTGATAATCATTTATTAATGCATTCCGGTATTACAGAACCAAAAGTTCAATGTGATGAATGTGGTAGTTGGTTGAAAAATCGTCATAGCTTAAGAAAACATATGAGAGAACAACATAATGAAATATCGAATTATATTTGTGGTACTTGTGGTAAAGTAGCACCAACTAAAGGTGCACTTAATATTCATGTAAAATATGTTCATTCCCTGAAAAGAACATTTAAATGTAGTCTTTGTTCGAGAGCATTTAAAGAGGCGATCGGTTTAAagGAACATATGGCAACACATACCGGTGAAGCACTCTATAATTGTTCATATTGTCCAAAAACATTCAGTGCAAATTCAAGTTTGTATTCACATCGAAAAAAAGCTCATCGAAAAGAATGGGAAGAAGCACGGCAGCAACGTTTTGGAAATGTTTCGAATACAACAATTTCTGAACAAAATACAAAAGATAATTAA
Protein Sequence
MRKNSPKKLLKSTNSTDTESDKNDDDDDKNEEDPNVEENLIDKIDNDGKSKKSESEFVRKSKEDDEEIAKFMKLKCDFCSDEFIIFAEIKRHYRIQHNMKGYVICCSKKFHKRVYLLDHVRMHVNPECFKCYECNKTFRDRRGLQTHILYHHESEDNKIYKCDQCPKSYAKLYTLNYHKRIHIAKEERHFYCELCQKSFATYHTLLKHRRHIHENFEGHMCDICARVIRDKGAFKNHMLQHTGIVEPKIQCKECGIWLKNIYSFRKHVKRHAEISDEHVCNVCGKVTPTKSLLQRHVKYVHSLERTFKCSLCPKAFKRSLNLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKAHPKEWEEGRRQRLGFEIILDINYDESQLELQQQSTSKRLTRSSHNLVSNNESNLTGRVNYNDNDESDFNDENSKRKFIKNFKRKTKNSKSKSETVCNIKKNDEEIANFMKLKCHLCIDEFKTFTEITHHYRSKHNRRGYIVCCNKKLFERASVLDHVRMHLNPDYFKCNDCNKTFADKKCLRSHMLGHESEKMFKCDQCPKTFARQYGLTTHKAVHVPPEERTFYCELCKKSFSTNKVLQNHQRSVHENDYAKICHICAKVIRDKTSFNNHILMHTGIVEPKLQCEECGSWLKNRHSLKKHMKKHTEISNLVCSICSKVFTTKPGYQTHMKNVHSLERTFKCILCPKAFKKALILKEHMATHTGEALYTCPHCPKSFNSNANLYTHRKSFHPKEWEEGRRQQIRLKTNTEETLLLEEQSSRRLTRSSYNFVNQQFSKDKNLLIKRRGNRKKFPKKSQEIQKFKPKRLLKTIENSYMNEIENINSNSNNLDENPAGQKRKTMKTESEYVRKSKEYDEEIANFMKLKCNLCIEEFKTFAEVKKHYRINHNTTGYVVCCNKKLLKRVLILEHVRMHLNPDYFKCHECNKTFLDRKCLQSHMLTHESDDIKIFKCDLCPKKFSRQYALECHKEMHVPSEERNFCCELCKKSFASKRTLQYHRRSVHENDYAKICHICAKVLRDKYSFDNHLLMHSGITEPKVQCDECGSWLKNRHSLRKHMREQHNEISNYICGTCGKVAPTKGALNIHVKYVHSLKRTFKCSLCSRAFKEAIGLKEHMATHTGEALYNCSYCPKTFSANSSLYSHRKKAHRKEWEEARQQRFGNVSNTTISEQNTKDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-