Xate009546.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730480.1:4427846-4429726[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3 2.2e+02 3.5 0.3 1 23 65 87 65 87 0.92
2 19 6.7e-06 0.00049 21.3 4.6 1 23 126 148 126 148 0.99
3 19 5.5e-08 4e-06 27.8 2.3 1 23 154 176 154 176 0.99
4 19 0.00058 0.042 15.2 6.7 1 23 182 204 182 204 0.99
5 19 2.2e-07 1.6e-05 25.9 0.9 1 23 210 232 210 232 0.99
6 19 0.00026 0.019 16.2 1.2 1 19 238 256 238 260 0.95
7 19 2.5e-07 1.8e-05 25.8 3.2 1 23 266 288 266 288 0.99
8 19 1.8e-05 0.0013 19.9 1.3 1 23 294 316 294 316 0.99
9 19 8.8e-08 6.4e-06 27.2 1.0 1 23 322 344 322 344 0.99
10 19 0.0001 0.0075 17.5 3.9 1 23 350 372 350 372 0.99
11 19 5.9e-05 0.0043 18.3 4.6 1 23 378 400 378 400 0.99
12 19 0.19 14 7.3 3.7 1 21 406 426 406 427 0.94
13 19 3.9e-05 0.0028 18.9 4.5 1 23 433 455 433 455 0.98
14 19 1.5e-06 0.00011 23.3 1.0 1 23 461 483 461 483 0.99
15 19 3.9e-08 2.8e-06 28.3 1.4 1 23 489 511 489 511 0.99
16 19 6.9e-05 0.005 18.1 3.8 1 23 517 539 517 539 0.99
17 19 0.00069 0.05 14.9 4.0 1 23 545 568 545 568 0.97
18 19 0.001 0.073 14.4 5.8 1 23 574 596 574 596 0.99
19 19 0.00075 0.055 14.8 4.1 1 23 602 625 602 625 0.95

Sequence Information

Coding Sequence
atGGCAGAAAATTTGCTTGAAAaggaaactattttatttactgACGAAAATCAatctgaatttattttaacagaaattgcaattaaacaagaaccagaaCTAATTATAGAGAATGaagatgaaattaaaaaaattcatgaattcTTAGATAAAACCGATATAACTGAAGAAGATCGAATGAATTTGATTTGGCATAGTTGTGCAGTTTGCGAAGAACGTTTCTTAAGTATCGAAGATTTATCATTGCACAACGAAACTCACGTAAAATCTGAAGAAATAATTTCAACTAGCATTTTGGATAATAGTGAAACAAATCCTAAAAACGATTTCGAATGTTCACAGTCACCAATAAAGACGGATACTAAAAAGAAACTATTCAAATGTAATCtctgcgatcgttcatttagtCAGAGAAAGCACTTTTTAGCACATGAACGAACGCATACAGGTGAACGTCCTTACAAATGTGATCTATGTAATAAATCATTTACACGAAAGGAAACTCTTGTAAGACATATTAAAACACATAATTCTGAAagaccatttaaatgtgatcgcTGTGATTGTTCATATAAATACAACAATAGTCTTAAAACGCATTATCGAACGCATACAAATGAACGTCCTTACAAATGTGATCTGTGTGATAAATCATATCCGCGAAAGGAAACTCTTGTAAGACATATTAAAACACATAGTTCTGAGagaccatttaaatgtgatcattgcgatcgttcatttattGAGAGGAAGAACTTATTGGCACACGATTTATTGCATACAGGTGAACGTCCTTACAAATGCGATCTTTGTGATAAATCATATACACGAAAGGAACATCTTGTAAATCATATTAAAACACATAATTCTGAAAGGCTATTTAAATGTGATCtctgcgatcgttcatttaatGAGAGAAATAACTTTTTGGCACACGAACGAACGCATACAGGTGAACGTCCTTACAAATGTGATATTTGTAATAAATCATTCACACGAGAGGAAACTCTTGTGAACCATATCAAAACACATAGTtctgaaaaacgatttaaatGTGATCtctgcgatcgttcatttaattttaagaatCTGTTTGAAACACATTATCGAAAGCATACTGGTGAACGTCCTTATAAATGTCATCTTTGCGATTCAGCATTTAGAGGAAAGGACCATCTTTACACTCATATGATGACGCATAATGTCGAGAGATCTTTTAAATGTGATCGTTGCGATCGATCATTTCTTGTAAAACGATATCTGCATAAACATAAAAAGAATTGTGGAAAAAACCATCACAAATGCCTTCAATGTGATGAAACATTTAGGAATAAACTTCATCTTCAAGCTCATATAAAATCCCATATTAAAAATGAAGTATTTAAATGTGATCTTTGTGATCGTTCATTTAGTGAGAGAAAGAACTTATTAGCACACGAACGAACGCATACAGGTGACCTTCCTTACAAATGTGAAATTTGTGATCAATCATTTACACGAAAGGAAACTCTTGTAAACCATATGAAAACACATAGTTCTGAGagaccatttaaatgtgatcttTGCGATCGTTCATATTCTGTGAAAAAACATCTAGTATTACATTATCGAAAGCATACCGGCGAACGACCTTACAAATGTGATCATTGTGATAAAGCGTTTATACAAAATGATCCACTTCAATGTCATATAAAAAGGTTCCATAGtgatgaaaaattatttagatGTGATCTTTGTTATCGATCGTTTGTTAAGAAACATGAATTTGAAACACATTATCGAAAGCATTCCCTCGAACAACCTTACATATGTCATCATTGTAAAACAGCATTTTTACGAAAAGATTatcttcaaaggcatatgaCGTTGGCTCATCCTTAA
Protein Sequence
MAENLLEKETILFTDENQSEFILTEIAIKQEPELIIENEDEIKKIHEFLDKTDITEEDRMNLIWHSCAVCEERFLSIEDLSLHNETHVKSEEIISTSILDNSETNPKNDFECSQSPIKTDTKKKLFKCNLCDRSFSQRKHFLAHERTHTGERPYKCDLCNKSFTRKETLVRHIKTHNSERPFKCDRCDCSYKYNNSLKTHYRTHTNERPYKCDLCDKSYPRKETLVRHIKTHSSERPFKCDHCDRSFIERKNLLAHDLLHTGERPYKCDLCDKSYTRKEHLVNHIKTHNSERLFKCDLCDRSFNERNNFLAHERTHTGERPYKCDICNKSFTREETLVNHIKTHSSEKRFKCDLCDRSFNFKNLFETHYRKHTGERPYKCHLCDSAFRGKDHLYTHMMTHNVERSFKCDRCDRSFLVKRYLHKHKKNCGKNHHKCLQCDETFRNKLHLQAHIKSHIKNEVFKCDLCDRSFSERKNLLAHERTHTGDLPYKCEICDQSFTRKETLVNHMKTHSSERPFKCDLCDRSYSVKKHLVLHYRKHTGERPYKCDHCDKAFIQNDPLQCHIKRFHSDEKLFRCDLCYRSFVKKHEFETHYRKHSLEQPYICHHCKTAFLRKDYLQRHMTLAHP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-