Xate026633.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:45299047-45300666[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4.7e-05 0.0034 18.6 3.6 1 23 8 30 8 30 0.99
2 18 6.6e-07 4.8e-05 24.4 7.6 1 23 36 58 36 58 0.99
3 18 2.6e-06 0.00019 22.5 1.3 1 23 64 86 64 86 0.98
4 18 1.2e-06 8.6e-05 23.6 2.7 1 23 92 114 92 114 0.98
5 18 0.0001 0.0076 17.5 1.7 1 23 120 142 120 142 0.99
6 18 1.1e-06 8e-05 23.7 2.2 1 23 148 170 148 170 0.99
7 18 0.0022 0.16 13.4 2.9 1 23 176 198 176 198 0.98
8 18 4.2e-06 0.0003 21.9 1.7 1 23 204 226 204 226 0.98
9 18 7.5e-06 0.00054 21.1 1.0 1 23 232 254 232 254 0.99
10 18 1.9e-06 0.00014 23.0 1.9 1 23 260 282 260 282 0.99
11 18 0.00096 0.07 14.5 0.2 5 23 292 310 291 310 0.96
12 18 0.0058 0.42 12.0 0.5 7 23 322 338 316 338 0.84
13 18 6.6e-07 4.8e-05 24.4 7.6 1 23 372 394 372 394 0.99
14 18 1.8e-05 0.0013 19.9 0.9 1 23 400 422 400 422 0.98
15 18 2.6e-06 0.00019 22.5 2.0 1 23 428 450 428 450 0.98
16 18 6.7e-05 0.0049 18.1 2.6 1 23 456 478 456 478 0.99
17 18 7.6e-07 5.5e-05 24.2 2.4 1 23 484 506 484 506 0.99
18 18 2.7e-05 0.002 19.3 0.8 1 23 512 534 512 534 0.98

Sequence Information

Coding Sequence
ATGAATACTaaagaaaaaccatataaatgcgATCGTTGTAATTGTTCATATCGTCGAAAGGGAAATTTAGTAGAACATGAACGAACTCATGACGGTGAACGGCCTTACAAATGTCATTATTGTGAGAAGACATTTAGACGAAATGATCATCTGCAAAAACATGAAATGACGCATACttgtgaaaaaccattcaaatgtgatcaatgcgatcgttcatttattGACAAGCGTCAGTTGATAGCACATAATCGAAAACATACCGGCGAATGTCCGTACAAATgtcaattttgtgataaaaaattTACACAAAGTCGAGCTCTTCAAAAGCATATACAACTTCATACTGGTGAAAAGTTATTTAAATGCGATCTTTGCGATTGCTCATATATTGAGAAGAGTGCCTTAATTGTACATTATCGAAAGCATACTGGAGAACGACCTTACAAATGTCATCTTTGTGATGAAGCATTTATACGAAAAGATTACCTGCTAAAACATCAATTAACGCATACTgatgaaaaaccattcaaatgtgatcttTGCAATTGTTCATATATTGAAAAACGTCAGTTAATAGCCCATAATCGAAAACATAACAGTGAATGTCCTTACAAATGTCAATTTTGTGATAAAGCATTTACACGTATGGAATCTCTTAAAATGCATATAAAACttcatactggtgaaaaacaatttaaatgcgATCTTTGCGATCGCTCATATATTAAGAAGAGTGGCTTAATTGTACATTATCGAAAGCATACTGGAGAACGACCTTACAAATGTCATCTTTGTGATGAAGCATTTATACGAAAAGATTACCTGCTACAACATCAATTAACGCATACTgatgaaaaaccattcaaatatgatcaatgcgatcgttcattCATTGACAAGCGTCAGTTAATAGCCCATAATCGAAAACATAACAGTGAACGTCCTTACAAATGTCAATATTATGAGAAAACATTTTACCGAAGTGATGCACTTGAAAAGCATATAAAAAGTCATACTAAAGATAAACCGTATAAATGTGATCGTTGCTGTTGTTCATATCTTCAAAAGAGAAGTTTAGTAGAACATGAACGAACTCACAACGATGATCGTCCTTACAAATGTCATTATTGTGAGAAGACATTTAGACGAAATGATCATCTGCAAAAACATGAaatgacgcatactggtgaaaaaccattcaaatgtgatcaatgcgatcgttcatttattGAAAAACGTGAGTTAATAGCCCATAATCGAAAACATACCGGCGAATGCCCTTACAAATGTCAATTTTGTGATAAAGCATTTACACGTATGGAATCTCTTAAAACGCATATAAAACttcatactggtgaaaaacaatttaaatgcgATCTTTGCGATTGCTCATATATTAAGAAGAGTGCCTTAATTGTACATTATCGAAAGCATACTGGAGAACGACCTTACAAATGTCATCTTTGTGATGAAGCATTTATACGAAAAGATTACCTGCTAAAACATCAAATGacacatactggtgaaaaaccattcaaatgtgatcaatgcGATCGTGCATTCGTTGACAAGCGTCAGTTGATAGGACATAATCGAAAACATAACGGTGAATATCCTTAA
Protein Sequence
MNTKEKPYKCDRCNCSYRRKGNLVEHERTHDGERPYKCHYCEKTFRRNDHLQKHEMTHTCEKPFKCDQCDRSFIDKRQLIAHNRKHTGECPYKCQFCDKKFTQSRALQKHIQLHTGEKLFKCDLCDCSYIEKSALIVHYRKHTGERPYKCHLCDEAFIRKDYLLKHQLTHTDEKPFKCDLCNCSYIEKRQLIAHNRKHNSECPYKCQFCDKAFTRMESLKMHIKLHTGEKQFKCDLCDRSYIKKSGLIVHYRKHTGERPYKCHLCDEAFIRKDYLLQHQLTHTDEKPFKYDQCDRSFIDKRQLIAHNRKHNSERPYKCQYYEKTFYRSDALEKHIKSHTKDKPYKCDRCCCSYLQKRSLVEHERTHNDDRPYKCHYCEKTFRRNDHLQKHEMTHTGEKPFKCDQCDRSFIEKRELIAHNRKHTGECPYKCQFCDKAFTRMESLKTHIKLHTGEKQFKCDLCDCSYIKKSALIVHYRKHTGERPYKCHLCDEAFIRKDYLLKHQMTHTGEKPFKCDQCDRAFVDKRQLIGHNRKHNGEYP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01540660;
90% Identity
iTF_01540660;
80% Identity
-