Xate005002.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730478.1:62090008-62100155[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.82 60 5.2 1.0 1 23 202 224 202 224 0.77
2 28 0.011 0.81 11.1 0.9 3 23 255 276 254 276 0.96
3 28 7.8e-05 0.0056 17.9 1.5 1 23 309 331 309 331 0.97
4 28 0.00033 0.024 15.9 5.7 1 23 337 359 337 359 0.96
5 28 6.9e-06 0.0005 21.2 0.0 1 23 365 387 365 387 0.97
6 28 4.5e-06 0.00033 21.8 0.5 1 23 564 586 564 586 0.96
7 28 0.0005 0.036 15.4 2.4 1 23 592 614 592 614 0.96
8 28 3.4e-05 0.0024 19.0 0.0 1 20 620 639 620 641 0.94
9 28 0.0024 0.18 13.2 1.3 1 23 794 816 794 816 0.98
10 28 0.003 0.22 12.9 4.2 3 23 824 845 823 845 0.97
11 28 0.017 1.2 10.6 0.2 5 23 854 872 851 872 0.95
12 28 3.3e-05 0.0024 19.1 0.7 1 23 878 900 878 900 0.96
13 28 0.00027 0.019 16.2 1.8 1 23 906 928 906 928 0.96
14 28 0.072 5.2 8.6 0.0 3 21 936 954 934 955 0.94
15 28 0.3 21 6.6 0.8 1 23 1037 1059 1037 1059 0.91
16 28 0.003 0.21 12.9 1.4 2 23 1110 1131 1109 1131 0.96
17 28 0.011 0.77 11.2 0.8 3 23 1139 1160 1138 1160 0.96
18 28 1.6e-05 0.0012 20.1 1.2 1 23 1193 1215 1193 1215 0.96
19 28 0.00011 0.0083 17.4 2.3 1 23 1221 1243 1221 1243 0.96
20 28 7.7e-05 0.0056 17.9 0.0 1 21 1249 1269 1249 1270 0.95
21 28 0.0024 0.18 13.2 1.3 1 23 1445 1467 1445 1467 0.98
22 28 0.003 0.22 12.9 4.2 3 23 1475 1496 1474 1496 0.97
23 28 0.08 5.8 8.4 0.3 5 23 1505 1523 1502 1523 0.95
24 28 7.5e-05 0.0055 17.9 0.5 1 23 1529 1551 1529 1551 0.96
25 28 5.4e-05 0.0039 18.4 1.3 1 23 1557 1579 1557 1579 0.96
26 28 0.0016 0.11 13.8 0.0 3 23 1587 1607 1585 1607 0.98
27 28 2.7e-05 0.002 19.4 2.0 1 23 1613 1635 1613 1635 0.99
28 28 3.2e-07 2.4e-05 25.4 0.2 1 23 1641 1663 1641 1663 0.99

Sequence Information

Coding Sequence
ATGGAGTTATGTCGGTGTTGTTTGTCACAAGGAAATATCGGATTAAATTGTTTCTCAGATGAAAACATTGTCGAAATTATTGGATTTTTGGGAATCGTTTCTCAAAATCATATTACTAACTTCCCAAAAAATGTATGTAACGCATGTGATTTGAAATTGAAAGATTTTGCTAACTTCAAAGAACAATGTACAAAATCCGAAGAGATTTTGAGGAAAAGATTTAAGGATTTTGATCTCATCAAAACAGAAGACCGTTCTGAAAGTATTCAGTCAAActtacaagaaaataataaaactgtTACGAAACCAAAACATCCAATAGCAAGAAGaaataaatccTCAACTCAAACATCTGAAAACAATGGCAATAAATCGGACGTGAAAAGTGAAATAGAAGAAGAcgaaaatttagaatatttggAGCCTGATATTAAATTAGAAGAAGATTTGAATGAATCAAATGATGATGGAAGTAAAGAGGACAATTCAAGTGAGAAAGAATCCTCTGAAGATAATTCTGATAAGAATGATGCTCCAACGAAGTCAAAACGCCAAATTGCTATGAAAAATCCACGACCGAAgaGGCGAAAAGTTAACTATCCATATCTGTGTCATATTTGCAATAAAGGATTTCGAATTGAACAACGCCGTGATGTCCATTTACGAGAACATGAAATTTCAGATCCAAGCaattcaaagaaattaattttaaaacggcgaagaaaaattttaacacgGACCTACAATCCGTATGTCGCTATTTGTGAATTTTGTGGCAATGAgtatactagttggagtggtcTTCTGCAACATGTTAAAAAGTGTCATTTAGATGAAACGAAATATCGTTGTGAATGCGGAAAATTATATCTATTTGAAAGTTCTTTTGAAACGCATCGTGCCACACATTACGGTCCGGAAAATTATGTTTGTGAAACTTGTGGAAAAATATGTCGTTATAAAGATGATCTTcaaAGACATTCTCTTGTTCACACGGATGAGAGACCGTTCCAATGCAAAACCTGTGGAAAATCTTACAAATCTAAGAAAAATTTACATGATCACGAATTTCGTCATACCGGAATCAGGAAATTTGCGTGTGAAGTTTGCGGAAAACCATTTGTTTCACGTCCTGAATTAAAAACGCATATGTTGGTTCATACCTCCGTGAAAGCATATAAATatAATTTTAGGAGACTGTCAAAGAATTTGGAATCACTTAAACTTTGTAATAAATATGAAGGTGTGCAAAAAGAAGAAATTCCATTATTAGACAACTTCGGTATTGATCGGGAATTTGCAGACAATTTGACTGAAATACATGAAAAGGAAGTagagaaaacgaaagaaaagtttggaaatgataaaaaatgGCAGAAAAATTGCGATGAATCAGAAAACGATAAAAATGAAGTATTAAATTCGGAAGATTATTCGATTTCAGATCATTCAATGGAAGATGATAATAATCTTAATTTAGAAACATCAACCAAATTTACTATAAAACGGACCAGTAAGACCTTAACAAGAACATATAATCCCAATGAGTATAGTACTTGGAATGGTCTTCTCCAACATGTTGAAAAGTGTCATTTAGATGAAACGAAATATCGTTGTTACTGCgggaaaatatttctatttgaaAAATCTTTTGAAACACATCGTGCCTCACATTATGGTCGggaaaaatatatttgtgaAACTTGTGGAAAATCATTTCCTGATCAACGTGATCTTAAaAGGCATTCCCTTAGTCATACGGATGAGAGACCTTTCCGATGCAAAACCTGTGAGAAAGCTTTCAAATCTGAAAAAACTTTACGTGCTCATGAATTTCGTCATACCGGAATCAGGAAATTTGCGTGTGAAGTTTGCGGAAAACCATTTGTTTCACGTTCTGAATTAAAAACGCATATAGAAGACGGTTGTGAAAATGTTTTACCAAATTTGCAAGAAAATAGTCCAAATGTCGGAATAGAATGTCCTCAAACAAGACGAAGCAAGAGACTGTCAAAGAATTTGGAATCACCTAAACTTTGTAATCAATATGGAGAGGTGCAAAAAGTAGAAATTCCATTATTAGACAGTTTTGGTATTGATCGGGAATTTGCGGAGAATTTGACTGAACAACATGAAAAGGAAGTAGAAAAAAcgaaagaattagaaaagtctggaaatgataaaaaatgGCAGAAAAATTCCGATGAATCAGAAGATGATAGAAATGATGTATCAAATTCGGAAGAATATTCGATTTCGGATAATTCAATGGAAGATGAAGATAATCTTAATTTAGAAACATCAACCAAATTTACCATAAAACGGAGCAGGAAAATCTTAACGAGAACATACAATCCaagaataaaacataaatttccATTTCAATGTCACATTTGTAATCGAGGATTCATCTACCAAGAAATGTTTGACGGACACTTGAGAGAACATGAAGGAGGAAGTGCTGCATTCTGCGAATATTGTAAGAAGGAGTACAGCACTATGTCATGCTTACGGCAACATATCAAGAAATATCATCTGGCTGAATTGAAATATCGTTGTGATTGCGGCAAAGCATTTATATTGAAAAGTGCACTCGAAATACATCGAACCTCTCATTACGGTCCGAGAAAATACATTTGTGAAACTTGTGGGAAGTCTTTTTCTGAGCAATTTTATCTTACAagacaTTCCATTGTTCATACAGATGAGAGACCATTCCAGTGCAAAGTCTGTGACAAAGCATTTAAATCAGCACAACGTTTGCGACAACATGAATTTCGTCATACTGGAATCAAGACATTTGGTTGTGCAGTTTGTGAGAAATCATTTCTTTCAAGCGCTGAATTAAAAGCACATATaaataaatcttCAACTCAAAAACTTGGAAACAATGGCAATAAATCGGACGTAGAAAGTGAAGTAGAAAAtaacgaaaattttgaatatttggaGCCTGATATTAAATTAGAAGAAGATTTGAATGAATCAGATGATGATGGAAGTAAAGAGGACAGTTCAAGTGATACGAAGAATGATGCTCCAAGGAAGTCGAAACGCcaaaaaactatgaaaaatcCACGACCGAAgaaGCGAAAAGTTAACTATCCATATCTGTGTCATATTTGCAATAAAGGATTTCAATTTGAACAACCTCTGGACCTACATTTACAGGAACATGAAATTTCAGATTCAGCCAATGTCGAAGATTCAGTGGAACCGGAAGTTTGGAACTCAAAAAAGGAATTTGTTATAAAACGGCGAactaaaatttttacaaaaattttaacaagAACCTACAATCCaaaaataaaacataatttcccattGCGATGCCATATGTGTAATCGAGGATTCCGATATCAGGAAATGCTCGACGGACATTTGAGGGAACACGATGGAAAAAACGTCGCTATTTGTGAATTTTGTGGCAATGAGTATAGCAGTTGGAGTGGTCTTCTGCAACATGTTAAAAAGTGTCATTTAGATGAAACGAAATATCGTTGTCACTGCgggaaaatatttctatttgaaAAATCTTTTGAAACACATCGTGCCTCACATTACGGTCCGGAAAAATACATTTGTGAAACTTGTGGAAAATCATTTCCTGATCAATGTGATCTAAAAAGGCATTCCCTTATTCATACGGATGAGAGACCTTTCCGATGCAAAACCTGTGAGAAAGCTttcaaatctgaaaaaaatttacGTGCTCACGAATTTCGTCATACCGGAATCAGGAAATTTGCGTGTGAAGTTTGCGGAAAACCATTTGTTTCACGTCCTGAATTAAAAACGCATATGCAGCTATGTTTGCAAACTGAAATAACTTTAAAAGACTTATTTAAAACTTCCAATTTCATAAAAAAGGAAGACGATTGTGAAAATGTTTTACCAAATTTGCAAGAAAATAGTTCAAATGACGGAATAGTATGTCCTCAAACAAGACGAAGCAAaAGACTAGCAAAGAACTTAGCATCACCTAAACTTGGTCATCAATATGGAGAGGTGAAGAAAGAAGAAATACCAATATTGGAAACGTTTGGTAATGATCGAGAATTTGCAGAAAATTTGACTGAACAACATGCAAAAATAGTAGAGAAAAcgaaagaattagaaaagttTGGTAATGATGAAAAATGCCAGAAAAATTGCAATGAATCAgaagataatgaaaatgaaatagtAAATTCAGAGAACTATTCAATTTCCGATCATTCAGTGGAAGAAAATGTTAATAATCCCAAATCAGAAACAACTAAATTTGTTATAGAAAGAAAAAgcagatttttaaagaaaacatataacCCaggaataaattataaatttccatttcAATGTCACATTTGTAATCGAGGATTCATCTACCAAGAAATGTTTGACGGACACTTGAGAGAACATGAAGGAGGAAGTGCTGCATTCTGCGAATATTGTAAGAAGGAGTACAGCACTATGTCATGCTTACGGCAACATATCAAGAAATATCATATGTCTGAATTGAAATATCGTTGTGATTGCGGCAAAgcatttatattgaaaaatgcACTCGAAATACATCGAACCTCTCATTACGGTCCGAGAAAATATATTTGTGAAACTTGTGGGAAGTCTTTTCCTGAGCAATTTTATCTTACAagacaTTCTCTTGTTCATACGGATGAGAGACCGTTTCAATGCAAAGTCTGTGACAAAGCTTTCAAATCTGTAAAACAGTTACGTGCTCATGAATTCCGTCATACCGGAATCAGGAAATTTGGCTGTGAAGTTTGTGGAAAGCCATTTCTTTCGAGCCCTGAATTAAAAGCACATATGTTAGTTCATAACTCCGTGAAAGCATATAAATGTACACTCTGTGAAAAAGACTTCcgttataaaaatcaattagatGTTCATATGCGATCGCATACTGGGGAAACCCCATTCAAATGTGAAATATGTGGAAaagcttttatacaaaaatctgCTTTAAATATTCATGCAAAAACtcatttacaaaaaaatgaaacattttaa
Protein Sequence
MELCRCCLSQGNIGLNCFSDENIVEIIGFLGIVSQNHITNFPKNVCNACDLKLKDFANFKEQCTKSEEILRKRFKDFDLIKTEDRSESIQSNLQENNKTVTKPKHPIARRNKSSTQTSENNGNKSDVKSEIEEDENLEYLEPDIKLEEDLNESNDDGSKEDNSSEKESSEDNSDKNDAPTKSKRQIAMKNPRPKRRKVNYPYLCHICNKGFRIEQRRDVHLREHEISDPSNSKKLILKRRRKILTRTYNPYVAICEFCGNEYTSWSGLLQHVKKCHLDETKYRCECGKLYLFESSFETHRATHYGPENYVCETCGKICRYKDDLQRHSLVHTDERPFQCKTCGKSYKSKKNLHDHEFRHTGIRKFACEVCGKPFVSRPELKTHMLVHTSVKAYKYNFRRLSKNLESLKLCNKYEGVQKEEIPLLDNFGIDREFADNLTEIHEKEVEKTKEKFGNDKKWQKNCDESENDKNEVLNSEDYSISDHSMEDDNNLNLETSTKFTIKRTSKTLTRTYNPNEYSTWNGLLQHVEKCHLDETKYRCYCGKIFLFEKSFETHRASHYGREKYICETCGKSFPDQRDLKRHSLSHTDERPFRCKTCEKAFKSEKTLRAHEFRHTGIRKFACEVCGKPFVSRSELKTHIEDGCENVLPNLQENSPNVGIECPQTRRSKRLSKNLESPKLCNQYGEVQKVEIPLLDSFGIDREFAENLTEQHEKEVEKTKELEKSGNDKKWQKNSDESEDDRNDVSNSEEYSISDNSMEDEDNLNLETSTKFTIKRSRKILTRTYNPRIKHKFPFQCHICNRGFIYQEMFDGHLREHEGGSAAFCEYCKKEYSTMSCLRQHIKKYHLAELKYRCDCGKAFILKSALEIHRTSHYGPRKYICETCGKSFSEQFYLTRHSIVHTDERPFQCKVCDKAFKSAQRLRQHEFRHTGIKTFGCAVCEKSFLSSAELKAHINKSSTQKLGNNGNKSDVESEVENNENFEYLEPDIKLEEDLNESDDDGSKEDSSSDTKNDAPRKSKRQKTMKNPRPKKRKVNYPYLCHICNKGFQFEQPLDLHLQEHEISDSANVEDSVEPEVWNSKKEFVIKRRTKIFTKILTRTYNPKIKHNFPLRCHMCNRGFRYQEMLDGHLREHDGKNVAICEFCGNEYSSWSGLLQHVKKCHLDETKYRCHCGKIFLFEKSFETHRASHYGPEKYICETCGKSFPDQCDLKRHSLIHTDERPFRCKTCEKAFKSEKNLRAHEFRHTGIRKFACEVCGKPFVSRPELKTHMQLCLQTEITLKDLFKTSNFIKKEDDCENVLPNLQENSSNDGIVCPQTRRSKRLAKNLASPKLGHQYGEVKKEEIPILETFGNDREFAENLTEQHAKIVEKTKELEKFGNDEKCQKNCNESEDNENEIVNSENYSISDHSVEENVNNPKSETTKFVIERKSRFLKKTYNPGINYKFPFQCHICNRGFIYQEMFDGHLREHEGGSAAFCEYCKKEYSTMSCLRQHIKKYHMSELKYRCDCGKAFILKNALEIHRTSHYGPRKYICETCGKSFPEQFYLTRHSLVHTDERPFQCKVCDKAFKSVKQLRAHEFRHTGIRKFGCEVCGKPFLSSPELKAHMLVHNSVKAYKCTLCEKDFRYKNQLDVHMRSHTGETPFKCEICGKAFIQKSALNIHAKTHLQKNETF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-