Basic Information

Insect: Xylophagus ater
Gene Symbol: -
Assembly: GCA_963422695.1
Location: OY730483.1:6797095-6803803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.00078 0.057 14.8 5.5 1 23 186 208 186 208 0.98

2 25 0.00012 0.0084 17.4 2.5 1 23 215 237 215 237 0.96

3 25 2e-05 0.0015 19.8 1.2 1 23 254 276 254 276 0.99

4 25 4.2 3e+02 3.0 0.2 12 23 281 292 277 292 0.87

5 25 9.6e-06 0.00069 20.8 0.3 1 23 298 320 298 320 0.95

6 25 0.00011 0.0078 17.5 0.3 1 23 326 348 326 348 0.98

7 25 0.0002 0.015 16.6 3.1 1 23 354 376 354 376 0.98

8 25 0.00015 0.011 17.0 0.8 1 23 382 404 382 404 0.98

9 25 4.4e-06 0.00032 21.8 1.5 1 23 410 432 410 432 0.98

10 25 0.15 11 7.6 1.0 8 23 594 609 593 609 0.96

11 25 9.2e-06 0.00067 20.8 3.6 1 23 612 634 612 634 0.98

12 25 0.00022 0.016 16.5 2.4 1 23 640 662 640 662 0.98

13 25 4.7e-05 0.0034 18.6 3.0 1 23 668 690 668 690 0.95

14 25 1.9e-05 0.0014 19.8 0.3 1 23 696 718 696 718 0.98

15 25 6.7e-05 0.0049 18.1 2.7 1 23 724 746 724 746 0.97

16 25 1.6e-05 0.0012 20.1 2.3 1 23 754 776 754 776 0.98

17 25 0.15 11 7.6 1.0 8 23 884 899 883 899 0.96

18 25 9.2e-06 0.00067 20.8 3.6 1 23 902 924 902 924 0.98

19 25 0.00022 0.016 16.5 2.4 1 23 930 952 930 952 0.98

20 25 7.4e-06 0.00054 21.1 0.8 1 23 958 980 958 980 0.95

21 25 0.00012 0.0084 17.4 0.1 1 23 986 1008 986 1008 0.98

22 25 6.7e-05 0.0049 18.1 2.7 1 23 1014 1036 1014 1036 0.97

23 25 1.6e-05 0.0012 20.1 2.3 1 23 1044 1066 1044 1066 0.98

24 25 0.00098 0.071 14.4 1.6 1 23 1072 1095 1072 1095 0.98

25 25 0.0006 0.043 15.1 0.8 1 23 1100 1122 1100 1122 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.00078	0.057	14.8	5.5	1	23	186	208	186	208	0.98
2	25	0.00012	0.0084	17.4	2.5	1	23	215	237	215	237	0.96
3	25	2e-05	0.0015	19.8	1.2	1	23	254	276	254	276	0.99
4	25	4.2	3e+02	3.0	0.2	12	23	281	292	277	292	0.87
5	25	9.6e-06	0.00069	20.8	0.3	1	23	298	320	298	320	0.95
6	25	0.00011	0.0078	17.5	0.3	1	23	326	348	326	348	0.98
7	25	0.0002	0.015	16.6	3.1	1	23	354	376	354	376	0.98
8	25	0.00015	0.011	17.0	0.8	1	23	382	404	382	404	0.98
9	25	4.4e-06	0.00032	21.8	1.5	1	23	410	432	410	432	0.98
10	25	0.15	11	7.6	1.0	8	23	594	609	593	609	0.96
11	25	9.2e-06	0.00067	20.8	3.6	1	23	612	634	612	634	0.98
12	25	0.00022	0.016	16.5	2.4	1	23	640	662	640	662	0.98
13	25	4.7e-05	0.0034	18.6	3.0	1	23	668	690	668	690	0.95
14	25	1.9e-05	0.0014	19.8	0.3	1	23	696	718	696	718	0.98
15	25	6.7e-05	0.0049	18.1	2.7	1	23	724	746	724	746	0.97
16	25	1.6e-05	0.0012	20.1	2.3	1	23	754	776	754	776	0.98
17	25	0.15	11	7.6	1.0	8	23	884	899	883	899	0.96
18	25	9.2e-06	0.00067	20.8	3.6	1	23	902	924	902	924	0.98
19	25	0.00022	0.016	16.5	2.4	1	23	930	952	930	952	0.98
20	25	7.4e-06	0.00054	21.1	0.8	1	23	958	980	958	980	0.95
21	25	0.00012	0.0084	17.4	0.1	1	23	986	1008	986	1008	0.98
22	25	6.7e-05	0.0049	18.1	2.7	1	23	1014	1036	1014	1036	0.97
23	25	1.6e-05	0.0012	20.1	2.3	1	23	1044	1066	1044	1066	0.98
24	25	0.00098	0.071	14.4	1.6	1	23	1072	1095	1072	1095	0.98
25	25	0.0006	0.043	15.1	0.8	1	23	1100	1122	1100	1122	0.97

Sequence Information

Coding Sequence: ATGAAAAATCCTTTTGAAGGTTTACAAAAGACTTGTCGGGCTTGTATGACAAAAGATGGTGAAATGCAGTGTTTATTCAATTCAGAAGTGGGCTCACTGAAAGTTTCTAAAATGTTTGCGTTTCTTAGTACTGTTAATATTTCTTCTGATGATGGATTACCAAATACAATTTGTTCAAATTGTTTAAATCTTCTAATAACTGCCCATGATTTCCAACAAATGTGTTTGCAATCTGATCTCGAAATGCgaataatgttaaataatttaacaaatattGAACAAGAGGAAATTAATCCAATAACAGAGAATACAGCTgaatttacaaaagaaaagaaaacagttAATACTGTTGGTACAAATGATCAAAAGCCCTCTGTGGATgctattaaaattgaattggcGGAATATCCGGTTGTAGACCAACAAATAACCGAAAATATTTCTGAATGtgttaaagaagaaaattcagataaTTTGGATAATATTGATGTCATGAGCAAAACTTCAGAAGATGATCTTCAAAAtgatgagaaaattgtgaaaaatgccaaaaaacaTGAATGcgaaatatgtaaaaaaagatattataaAAAGTTTGCATTACATCGTCACATGAACGTTCATAACGCTGAAGGTAGACCATTCGAGTGTGATACTTGCAAGCGACGATTTAGAACTGAAGGCCATTTAACTCGGCATTCGATTATTCACAGTGAAACTCTCGCTAAACTAACAACAATAATGAAAAAACcagaaatatataaatgttCACAATGTCCAAGAGAATTCCAAAAACAAGAATCATTGTCTTCTCACATGCGAATACATAAAGGTTTTTTAAATTCCAGCAAATTAAAAGATCATTTAAGAATTCACACGGGTGAGAAGCCATTTTTATGTGCGGAATGCGGTAAAGCATTTAACAATAGCGGCAGCCTTCGACAACATTTGTTACGGCATACAGGAGTTAAACCATTTCCTTGTTCCGAATGTCCTAGCAAATTTACATTAAAGGGTGACTTAAAATCTCACATGATAACACATACCGGAATTAAACCACATACATGTGATATTTGCGGATCCTCTTTTACAAAAAGATATTCATTAGACAAACATAAAAGAATTCATACAGGAGATAAACCATATGCATGCGAAGTTTGCGGAATGAggTCTATTTCATCGTATCACATAAAGCGTCATATGCGAATTCACACTGGTGAAAAACCGTACAGTTGTAAATTTTGTGATCGTGCTTTCTCTCAAAGCAATGATCTTCTTAAACATACTCGCGTACATATCGaaaatttacaaaatgcTTGTCGAGCGTGTATGACAAAAGGTGCCGAAATGCAGAGTTTATtcaattcagaagtgggatcAGTGCGAGTTTCAAAGATGTTCTCGTTTCTGTGCGCAGTTAATATTTCTCCGGACGATGGATTACCAAATTCTATTTGTTTACCTTGTTTAAATCTTCTAGTAACTACCCACGATTTCCAGCAAATGTGTTTGCAATCTGATCTAGAAATGCGAGCAATGCTAAATAATTTACCAAATAATCAGCAAGAAGAAAGCAAACCAATACCAGAAATTGCTACAGAATCCGAGAGTGCAGATAATACGGTGAAAGCAAATGACCAACATCCGTTTGtggattttaaaattgaaatcgtGGAATTCTCGATTGCAGACCAACCAATaaccgaaaatatttttgagTGCGTTAAAGAAGAACCAAATTCTGATCATGACTTCGACAATGCGAGCCAAGATGCTTCTAAAATGTTTTCTAAATTGTATTTACTAACAATGCATATGAAAACACATGTAAGTCATCAATGTAATCTATGCACTAAAACATTCTCTACGAATTCGCAATTAGTATATCATATCAATAGGCACAATGGTATAAAACCGTTTACTTGTCATGTTTGCCAGAAAAGTTTTCTACTACAGAGTGCATTAAAGAATCATTTAAGAATTCACAGCGGTGAAAAGCCGTATTTATGTGCGGAATGTGGAAAAACATTCACCAGACAGAAATGTCTTCAAGTACATTTGTTTCGGCATACAGGAGTTAAACGATTTTCTTGTCTCGAATGTCCTAGGAAATTTCCAATGAAGTCCGAATTAGAATCCCACATGATAACACATACTGGTATTAAACCGCATACTTGTGATATTTGCGGGTCTTCCTTTACAAAACCCCAGTCACTACGAAAACATAAAAGATTGCATACAGGTACGGAAAATAAACCATATGCATGCGAACTTTGTAAAATGagATTTACTTCGTCGTATTATGTTAAGCGTCATATGAGAactcatactggtgaaaaaccatataaatTAACTACCCACGATTTCCAGCAAATGTGTTTGCAATCTGATCTAGAAATGCGAGCAATGCTAAATAATTTACCAAATAATCAGCAAGAAGAAAGCAAACCAATACCAGAAATTGCTACAGAATCCGAGAGTGCAGATAATACGGTGAAAACAAATGACCAACATCCGTTTGtggattttaaaattgaaatcgtGGAATTCTCGATTGCAGACCAACCAATaaccgaaaatatttttgagTGCGTTAAAGAAGAACCAAATTCTGATCATGACTTCGACAATGCGAGCCAAGATGCTTCTAAAATGTTTTCTAAATTGTATTTACTAACAATGCATATGAAAACACATGTAAGCCATCAATGTAATCTATGCACTAAAACATTCTCTACGAATTCGCAATTAGTATATCATATCAATAGGCACAATGGTATAAAACCGTTTACTTGTCATGTTTGCCAGAAAAGTTTTCTACTACAGAGTGCATTAAAGAATCATTTAAGAATTCACAGCGGTGAAAAGCCGTATTTATGTGCGGAGTGTGGAAAAACATTCACCAGACGCAATGATCTTCAAGTACATTTGTTTCGGCATACAGGAGTTAAACGATTTTCTTGTCTCGAATGTCCTAGAAAATTTCCATTGAAGGCCGAATTAGAATCCCACATGATAACACATACTGGTATTAAACCGCATACTTGTGATATTTGCGGGTCTTCCTTTACAAAACCCCAGTCACTACGAAAACATAAAAGATTGCATACAGGTACGGAAAATAAACCATATGCATGCGAACTTTGTAAAATGagATTTACTTCGTCGTATTATGTTAAGCGTCATATGAGAactcatactggtgaaaaaccatataaatgtaaattttgtgaTAGTGCTTTTTCCCAAAGTAACGTTCTTCTTAAACATACGCGCATATATCACAATGAAAAACCATATCAATGTTCAGAATGTCCGGAAAAATTTCGTTTACAAAAGGAACTACTTGTGCACACCCAATTCCATTATAAAGAGAAACAAAAGGCAAATAAATAA
Protein Sequence: MKNPFEGLQKTCRACMTKDGEMQCLFNSEVGSLKVSKMFAFLSTVNISSDDGLPNTICSNCLNLLITAHDFQQMCLQSDLEMRIMLNNLTNIEQEEINPITENTAEFTKEKKTVNTVGTNDQKPSVDAIKIELAEYPVVDQQITENISECVKEENSDNLDNIDVMSKTSEDDLQNDEKIVKNAKKHECEICKKRYYKKFALHRHMNVHNAEGRPFECDTCKRRFRTEGHLTRHSIIHSETLAKLTTIMKKPEIYKCSQCPREFQKQESLSSHMRIHKGFLNSSKLKDHLRIHTGEKPFLCAECGKAFNNSGSLRQHLLRHTGVKPFPCSECPSKFTLKGDLKSHMITHTGIKPHTCDICGSSFTKRYSLDKHKRIHTGDKPYACEVCGMRSISSYHIKRHMRIHTGEKPYSCKFCDRAFSQSNDLLKHTRVHIENLQNACRACMTKGAEMQSLFNSEVGSVRVSKMFSFLCAVNISPDDGLPNSICLPCLNLLVTTHDFQQMCLQSDLEMRAMLNNLPNNQQEESKPIPEIATESESADNTVKANDQHPFVDFKIEIVEFSIADQPITENIFECVKEEPNSDHDFDNASQDASKMFSKLYLLTMHMKTHVSHQCNLCTKTFSTNSQLVYHINRHNGIKPFTCHVCQKSFLLQSALKNHLRIHSGEKPYLCAECGKTFTRQKCLQVHLFRHTGVKRFSCLECPRKFPMKSELESHMITHTGIKPHTCDICGSSFTKPQSLRKHKRLHTGTENKPYACELCKMRFTSSYYVKRHMRTHTGEKPYKLTTHDFQQMCLQSDLEMRAMLNNLPNNQQEESKPIPEIATESESADNTVKTNDQHPFVDFKIEIVEFSIADQPITENIFECVKEEPNSDHDFDNASQDASKMFSKLYLLTMHMKTHVSHQCNLCTKTFSTNSQLVYHINRHNGIKPFTCHVCQKSFLLQSALKNHLRIHSGEKPYLCAECGKTFTRRNDLQVHLFRHTGVKRFSCLECPRKFPLKAELESHMITHTGIKPHTCDICGSSFTKPQSLRKHKRLHTGTENKPYACELCKMRFTSSYYVKRHMRTHTGEKPYKCKFCDSAFSQSNVLLKHTRIYHNEKPYQCSECPEKFRLQKELLVHTQFHYKEKQKANK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -