Xate009548.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730480.1:4439244-4443104[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 3.4 2.5e+02 3.3 0.3 1 23 38 60 38 60 0.92
2 22 0.00014 0.01 17.1 3.7 1 23 99 121 99 121 0.99
3 22 6.1e-07 4.5e-05 24.5 2.9 1 23 127 149 127 149 0.99
4 22 0.00073 0.053 14.8 0.4 1 19 155 173 155 177 0.95
5 22 7.6e-06 0.00055 21.1 4.5 1 23 183 205 183 205 0.99
6 22 0.00016 0.011 17.0 3.1 1 23 211 233 211 233 0.99
7 22 7.7e-07 5.6e-05 24.2 2.6 1 23 239 261 239 261 0.99
8 22 3.6e-06 0.00026 22.1 2.0 1 23 267 289 267 289 0.99
9 22 1.7e-07 1.2e-05 26.3 1.8 1 23 295 317 295 317 0.99
10 22 4.9e-06 0.00035 21.7 0.7 1 23 323 345 323 345 0.99
11 22 2.8e-07 2e-05 25.6 3.2 1 23 351 373 351 373 0.99
12 22 0.00016 0.012 16.9 4.0 1 23 379 401 379 401 0.99
13 22 9.9e-09 7.2e-07 30.2 2.0 1 23 407 429 407 429 0.99
14 22 7.9e-07 5.7e-05 24.2 3.1 1 23 435 457 435 457 0.99
15 22 4.9e-06 0.00035 21.7 1.9 1 23 463 485 463 485 0.98
16 22 4.5e-05 0.0033 18.7 3.5 1 23 491 513 491 513 0.99
17 22 3.1e-06 0.00022 22.3 3.6 1 23 519 541 519 541 0.99
18 22 1.6e-05 0.0012 20.1 3.3 1 23 547 569 547 569 0.99
19 22 6.5e-08 4.7e-06 27.6 1.4 1 23 575 597 575 597 0.99
20 22 0.00012 0.0084 17.4 3.9 1 23 603 625 603 625 0.99
21 22 2.8e-05 0.002 19.3 4.2 1 23 631 653 631 653 0.99
22 22 0.0035 0.26 12.7 2.6 1 21 659 679 659 680 0.95

Sequence Information

Coding Sequence
atggaGATCAGTCTTCGCTATTTGGATAGTTCATCAAATGATCCATCAATTATTTCTAAtctttttgATAAAACCGATATAACTGAAGAAGATCGAAAGAATTTGATTTGGCATAGTTGTGCAGTTTGCGAAGAACGTTTCTTAAGTATCGAAGATTTATCATTGCACAACGAAACTCACATAAAATCTGAAGAAATAATTTCAACTAGCATTCCGGATAATAGTGAAATAAATCCTAAAAACGATTTCAAATGTTCACAGTCACAAATAAAGACGGATACTAAAAAGAAACTATTCAAATGTGATCTCTGCGATCGTTTATTTAGTCAGAGAAAGCACTTTTTAGCACACGAACGAACGCATACAGGTGAACGTCCTTACAAATGTGATCTGTGTGATAAATCATATCCACGAAAGCAACATCTTTTAAGGCATATCCAAACACATAATTCTGAGAAAGAATTTAAATGTGATCtctgcgatcgttcatttattGAGAGGAAGAACTTATTGGCACACGATTTATTGCATGCAGGTGAACGTCCTTACAAATGCGATCTTTGTGCTAAATCATATACACGAAAGCAACATCTTTTCAGGCATATCCAAACACATAATTCTGAGAAAGAATTTAAATGTGATCtctgcgatcgttcatttaatGCGAGAAAGCACTTTTTGGCACACGAACGAACGCATACAAATGAACGTCCTTACAAATGTGATCTGTGTGATAAATCATATCCACAAAAGCAACATCTTTTAAGGCATATCCAAACACATAATTCTGAGAAAGAATTTAAATGTGATCattgcgatcgttcatttattGAGAGGACGAACTTATTGGCACACGAACGAACGCATACAGGTGAACGTCCTTACAAATGTGATCTGTGTGATAAATCATATCCACGAAAGCAAAATCTTTTCAGGCATATCCAAACACATAATTCTGAGAAAGAATTTAAATGTGATCtctgcgatcgttcatttattGAGAGGAAGAACTTATTGGCACACGAACGAACGCATACAGGTCAACGTCCTTACAAATGCGATCTTTGTGATAAATCATATACACGAAAGGAACATCTTGTAAATCATATTAAAACACATAATTCTGAGAGGCTATTTAAATGTGATCattgcgatcgttcatttaatGCGAGAAATAGCTTTTTGGCACACAAAcggacgcatactggtgaacgTCCTTACAAATGTGATATTTGTGATAAATCATTTACACGAAAGGAAACTCTTACAAACCATATCAAAACACATAGTTTTGAGagaccatttaaatgtgatctcTGTGATCGTTCATATAAATACAACGATAATCTTAAAAACCATTAtcgaacgcatactggtgaacgACCTTACAATTGTGATCTTTGTAATAACTCATTTACACGAAAGGAAACTCTTACAAACCATATCAAAACACATAGTTTTGAGAGACAATTTAAATGTGATCTTTGTGATcgttcatttaattttaagaatCTGTTTGAAACACATTAtcgaacgcatactggtgaacgTCCTTATAAATGTCAGCATTGTGATTCAACATTTGCAGGACGGGAAAATCTTCGCAAGCATATGAGAAGACATAATGTTGACAGAGCTTTTAAATGTGATCATTGCGATCGTTTATTTAAGGACAGAAGGAACTTATTGGTACACGAACGAACGCATTCGGGTGAACGTCCTTACAAATGCGATCTTTGTGATAAATCATATACACGAAAGGAAAATCTTGTAAACCATATAAAAACACATAGTTCCGAAAAACGATTTAAATGTGATCtctgcgatcgttcatttaattttaagaatCTGTTTGAAACACATTATCGAAAGCATACTGGTGAACGTCCTTATAAATGTCATCTTTGCGATTCAGCATTTAGAGGAAAGGACAATCTTCACACTCATATGATGACGCATAATGTCGAGAGATCTTTTAAATGTGATCGTTGCGATCGATCATTTTTTGTAAAACGATATCTGCTTAGACATAAAAAGAATTGTGCAAAAAAACCATCACAAATGCCTTCAATGTGA
Protein Sequence
MEISLRYLDSSSNDPSIISNLFDKTDITEEDRKNLIWHSCAVCEERFLSIEDLSLHNETHIKSEEIISTSIPDNSEINPKNDFKCSQSQIKTDTKKKLFKCDLCDRLFSQRKHFLAHERTHTGERPYKCDLCDKSYPRKQHLLRHIQTHNSEKEFKCDLCDRSFIERKNLLAHDLLHAGERPYKCDLCAKSYTRKQHLFRHIQTHNSEKEFKCDLCDRSFNARKHFLAHERTHTNERPYKCDLCDKSYPQKQHLLRHIQTHNSEKEFKCDHCDRSFIERTNLLAHERTHTGERPYKCDLCDKSYPRKQNLFRHIQTHNSEKEFKCDLCDRSFIERKNLLAHERTHTGQRPYKCDLCDKSYTRKEHLVNHIKTHNSERLFKCDHCDRSFNARNSFLAHKRTHTGERPYKCDICDKSFTRKETLTNHIKTHSFERPFKCDLCDRSYKYNDNLKNHYRTHTGERPYNCDLCNNSFTRKETLTNHIKTHSFERQFKCDLCDRSFNFKNLFETHYRTHTGERPYKCQHCDSTFAGRENLRKHMRRHNVDRAFKCDHCDRLFKDRRNLLVHERTHSGERPYKCDLCDKSYTRKENLVNHIKTHSSEKRFKCDLCDRSFNFKNLFETHYRKHTGERPYKCHLCDSAFRGKDNLHTHMMTHNVERSFKCDRCDRSFFVKRYLLRHKKNCAKKPSQMPSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-