Xate028013.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730485.1:19586948-19598585[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 53 0.11 7.8 8.0 1.1 1 19 203 221 203 224 0.93
2 53 0.018 1.3 10.5 0.1 2 23 234 256 233 256 0.93
3 53 0.35 26 6.4 0.1 1 23 257 279 257 279 0.90
4 53 0.00045 0.032 15.5 0.6 1 23 285 308 285 308 0.95
5 53 0.43 31 6.1 2.8 1 23 313 335 313 335 0.98
6 53 0.00032 0.023 16.0 2.4 1 23 339 361 339 361 0.98
7 53 0.024 1.8 10.0 1.3 1 20 366 385 366 387 0.93
8 53 0.065 4.7 8.7 0.5 2 23 397 419 396 419 0.95
9 53 0.00039 0.028 15.7 0.5 1 23 423 445 423 445 0.98
10 53 0.00025 0.018 16.3 0.7 1 23 451 474 451 474 0.95
11 53 0.0091 0.66 11.4 2.1 1 23 479 501 479 501 0.99
12 53 0.003 0.22 12.9 7.3 1 23 507 529 507 529 0.99
13 53 0.0016 0.12 13.8 1.6 1 23 535 557 535 557 0.95
14 53 0.00029 0.021 16.1 2.0 1 23 563 585 563 585 0.99
15 53 0.00019 0.014 16.7 1.2 1 23 592 614 592 614 0.98
16 53 0.0027 0.19 13.1 0.8 1 21 620 640 620 641 0.94
17 53 0.0017 0.12 13.7 0.6 1 23 657 680 657 680 0.97
18 53 0.041 3 9.3 1.7 1 23 686 708 686 708 0.96
19 53 2.6e-05 0.0019 19.4 0.4 1 23 714 737 714 737 0.97
20 53 0.1 7.3 8.1 0.1 1 23 743 765 743 765 0.97
21 53 0.054 3.9 9.0 1.1 1 20 985 1004 985 1006 0.94
22 53 0.0014 0.1 13.9 2.2 2 23 1016 1038 1015 1038 0.95
23 53 0.00013 0.0094 17.2 0.2 3 23 1041 1061 1040 1061 0.96
24 53 0.0012 0.088 14.2 5.2 1 23 1067 1090 1067 1090 0.96
25 53 0.66 48 5.5 3.3 1 23 1095 1117 1095 1117 0.97
26 53 7.2e-06 0.00052 21.2 1.6 1 23 1123 1145 1123 1145 0.98
27 53 1.2 84 4.8 0.4 1 23 1179 1202 1179 1202 0.95
28 53 0.00066 0.048 15.0 3.3 1 23 1206 1228 1206 1228 0.97
29 53 0.00013 0.0096 17.2 3.6 1 23 1234 1257 1234 1257 0.98
30 53 0.0096 0.7 11.3 2.1 1 23 1262 1284 1262 1284 0.99
31 53 0.00096 0.069 14.5 3.4 1 23 1290 1312 1290 1312 0.98
32 53 0.0001 0.0075 17.5 0.8 1 23 1318 1340 1318 1340 0.95
33 53 0.00011 0.0083 17.4 1.1 1 23 1346 1368 1346 1368 0.98
34 53 6.4e-05 0.0047 18.2 1.6 1 23 1374 1396 1374 1396 0.98
35 53 0.24 18 6.9 4.2 1 21 1402 1422 1402 1423 0.93
36 53 0.045 3.3 9.2 1.1 1 20 1566 1585 1566 1587 0.93
37 53 0.012 0.9 11.0 1.2 2 23 1597 1619 1596 1619 0.92
38 53 0.083 6 8.4 0.3 3 23 1622 1642 1620 1642 0.92
39 53 0.0012 0.084 14.2 1.1 1 23 1648 1671 1648 1671 0.97
40 53 5.5 4e+02 2.6 4.1 1 23 1676 1698 1676 1698 0.95
41 53 0.00082 0.06 14.7 1.4 1 23 1704 1726 1704 1726 0.98
42 53 0.63 46 5.6 1.7 2 20 1730 1748 1730 1750 0.92
43 53 0.0016 0.12 13.8 0.9 2 23 1760 1782 1759 1782 0.95
44 53 1.1e-05 0.00078 20.6 0.5 1 23 1786 1808 1786 1808 0.97
45 53 8.9e-06 0.00065 20.9 0.6 1 23 1814 1837 1814 1837 0.96
46 53 0.086 6.3 8.3 4.1 1 23 1842 1864 1842 1864 0.98
47 53 0.11 8 8.0 9.8 1 23 1870 1892 1870 1892 0.98
48 53 1.2e-05 0.00089 20.4 0.9 1 23 1898 1920 1898 1920 0.96
49 53 0.00018 0.013 16.7 1.5 1 23 1926 1948 1926 1948 0.98
50 53 2.9e-06 0.00021 22.4 1.6 1 23 1954 1976 1954 1976 0.99
51 53 0.0018 0.13 13.6 3.4 1 20 1982 2001 1982 2003 0.95
52 53 3.3e-05 0.0024 19.1 0.8 1 23 2016 2039 2016 2039 0.96
53 53 7.2 5.2e+02 2.3 6.0 1 23 2045 2067 2045 2067 0.95

Sequence Information

Coding Sequence
ATGGACAGTGAACAAGACGATTCAAGATATGAAATCCATCATCTTTGTCGAGGATGTGTTAGAGTTGGCGATGAAACAACGCTCTTCCCTTTATTTACGAAAGATTCATCATTAGAAACTTCATATATTGATTTAATTCAagcatttaatttcattaatttaaagATTAAGAAAAACGATGGACTTCCACAACAAATTTGTAAAACTTGTATTGCTGATTTAACGCACATTAATAACTTCAGAAAAGCATGTGAAAAATCACAAATTGTTTTaaaggaatattttttaaaacatttgaaTAAACAAGGCGAGAACGAAGAAATTGAATATGATGATctagaatttttaaatgaatatgaaGATCAAatAGAAGACATAACAAACTGTGAATATGAAGAGGACCATTCGAATGATATAACATTGGAAGAAATCGATGATACAAATCATAATGAAATTGCAAACGATTTCGAATTTACTGAATTATCTGAAAATACtaattcaattattaaaaatccTGAAAAACCCAAGGTTATTTTAGATATTCGAATCAATGAGAATAACGAAgAATCAGATGATATAATAGAAACAAACGAAGATACAATATCATATAGTTGTGGCGATTGCAAAGagaatttttcaaatgaattgCTATTAAAAGAACATTCATGTAGTTTGAATGATAATAAAGTACAAAATTGGAATTGTCGCTATTGTGAAGAGGAATTTGCTAATGAAGAAAAGTTAGAAGAGCACATGACCAATGTACACTTTTTTTGTAGTATTTGTGAACAAACATTCATAACTGCTGGCATCTTAGCACAGCATTCAGAAATCCATACTCCAAAAGATATATTCGAATGCGACATTTGTAATCAAGGTTTTCGAAATCCTTATTATGTTACTAGACATAAAAAAGCATTACATGAAAAAGGTGATTTTCAATGTCAAATATGtttgaaaaaatatgaaaacattaGGCGttttaaatatcatttaaattcTCATAATCCAAGATTTCATTGTACAAAATGTAATAAATCATTTATAGAACGTGCTTCATTATTAATTCATGAAAGAACACATATTCATACAAAATACACATGTGATAATTGCAAAGAAAGTTTTTCAAATGAATTACTATTAAAGGAACATGAATGCAATTCGatagataataaaataaaaagattgtatTGTCGAcgttgtaaaattaaattgtcGAATAAAGAAGAATTAGAATTGCACATGGCAAAGTTACATAGTGGACCTTACATTTGTAAGTTTTGTGAACGTGCTTTTGTAAGTGCTAATAAGTTGAAAAGTCATTTACAAGTGCATAATCCAAAAGATGCATTTAAATGTGATATTTGTAATCAAGGTTTTCGAACTGGACCTAATCTTAAAAGGCATAAAAAAGCTTTACATGAAAAAGGTGATTTTCAGTGTGAAAATTgttcaatgaaatttgaaacAGTAATGAAATTAAGGTATCATTTAAAAACTCATGATCCaagtaaaaaatattattgtaaatattGTGAGAAATCATTTTTACAAAGTACTCATTTAAACCATCACGAACGAACACATACAGGCTTGAGACCATTCCTTTGTAATGTTTGTGGAAGAggCTTTAATCTGCACGATAGTTTGAAACTACATTTACAAAAGCATAGTGGAGTTAAACCTTATGTTTGTAAGATTTGTGAAAAAGGTTTCTATATTCAGTACTATTATAAAATGCATATGAAAACTCATGAGGGTATTGCAAAATTATATCACTGTGATATTTGTGGTAAAAATGTTCAAACAAAATTATCATTAGAAAATCATATTCGAACGCACACCGGTGAaagaccattcaaatgtgatatATGCGATAAAAATTATGCATATAAGCAATTATTAATAGCTCATAAATGTGtagtaaataaaaatgataatgaaattgaaactgaagGTGAACGGAAATATAGATGTAACGAATGTGGATCATCGtttaaaaaatcaaagattttACAAGCTCATATTAGTCGGATTCATTTAAAACGGCGACCACATAAATGCAATATTTGTGATAAAGCATTTTTTCTACCTTTTGAACGGAATATTCATGAAAAATCTCACACAGATGAAAGACTACATGAATGTAAAATATGTGGTAAaccttttaaaaatgaaaaagctGTAATCGCACATTTACGACGGGTTCATTCGCGAGAAAAGCCTTACGAATGCGGAATCTGTTTAATGGGCTTTCCAACTTATATTTCACTTGAAACACATAAAACAGTTCATTCTGAAGGCAAACGAAAAGAAGAACATGAAAATCTaagcaaaataatGAACGGTGAACAAGACGATTTAAGATTTGAAATCCATCAACTTTGTCGAGGATGCGTTAGAGTCGGCGATGAAACAACGCTCTTCCCTCTATTTGTAAAAGATTCATCATTAGAAACTTCATATATTGATTTAATTCAagcatttaatttcattaatttaaagATTGAGGAAAATGATGGTCTACCACAACAAATTTGCCAAATTTGTATTGCTCGTTTATCAgacataaataaatttcaaaaagcaTGTGAAAAGTCCCAAGACATTTTAAAGGAATactttttaaatcatttaaatctAAAAGACGGAGACGAAGAAAATGAATATGATGAGCtagaatatttaaatgaatatgaAGATGAAatAGAAGGCTTAACAAACCGTGAATATGAAGAAGAGCATTCGAATGATATAACATTGGAAGAAATCGATGATACTAGTAATGATGAGATTGTAAAAGATTTCGAATTTGACACATCtgaaaatgttaatttaatatttaaaaatcccGAAAACACCAAGAATGTTTTAGATATTCTAATCAATGAAAATAATGAGAATAACAAagaATCAAACAATACACTAGAAAAAAATGAAGATGTAATATCATATACATGTGATGACTGTAAAGAGGATTTTCCCAGTGAATTCCTATTACAAGAGCATAAATGCAACTTGAGTgctaataaaatacaaaacttgAATTGTCAACATTGCGAAAAGGAATGTGCTAATAAGGAAGCATTAGAGAAGCACATAATGAAAATACACAGGATTTGTAAAATTTGTGAACGAACGTTTAAAACTGCTGGCCTTTTAAAACAACATATAGGAATACATAATCCAAAAGATACATTTAAATGTGATATTTGTAATCAAGGTTTTCGAACTCACCATTATCTTCGTAAGCATAAAATATCTGTACATTTGAAAGGTGACTTTCAGTGTAAAATATGTTCGATGAAATTTCAAAGCGTCATGAGATATAAATACCATTTAAAATCTCATGATccaaataaaagattttattgtaaaatttgtgaTAAATCATTTCGACAACGTACTGCACTACTAATTCATGAACGAAAACACATgcattcaaaattcaaatgtgATAATTGTAAAGAaggttttttaaatgaattactATTAAAAGAACATAAATGCAATTTGACTAATAAAGAAAGGAACTTTAATTGTCGACGTTGTAAAACTAAATGGCCGAATAAAGAACAATTGGAAGAGCACATAGCGAAAGTACATAATGGGCCTCATATATGTGAAATTTGTGAAAGAAGTTTTAAAGATGTTCATAAGTTAAAAAGTCATTTAAAAGTGCATAATCCAAAAGATTCATACAAATGTGAAGTATGTAATCAAGGTTTTCGAACTGAACATTATCTTACAAAACATAAAAAGACTGTACATGAAAAAGGTGATTTTCAGTGTGAAACATGTTCGATGAAATTTGAAACcgtaatgaaattaaaatatcatttaagATCTCACGACCCAAGTAAACaatattattgtaaatattgtgaaaaatcatttttgcaAAGTACTCATTTAATAAATCATGAACGAATACATACTGGTTTAAAACCATTCCTTTGTAATATTTGTGGAAAAGatTTTAATCTGAATGATAGTttaaaactacatttaaaaagACATAGCGGAGTTAGACCTTTTGTTTGTAACATTTGTGGACAAGGCTTCTATATTCAGTACTATTATAAAACTCACATGAACACCCATGAGGGTACTGAATTATTTAGTTGCTCTTTTTGTGGTAAAGGTTATCGAAACAAATTGTCATTAAATAGTCATGTTCGAACTCATACTGATATGagaccatttaaatgtgatttaTGTAGGAAAACTTTTGTAAACAAGCTAAGATTAAATTATCATAAATGCACCGTAAATaaagttgaaaatgaaattgaatgcaGTTGTAGCGAATGtgaaCATATGACAGAACTTTCTGATACTGAAGAAAAGGAAGAAGACGATACAAAACTTTCAGAATTAGGAAATTTTATTGTTGGCGATGAAATTGAAATCGAAGAAATCATCTTAGATACAAATGAAGATATCTTGatAGAAGACATAGCAACCCGTGAATATGAAGAAGGGTATTCGAATGATAAAACATTGGAAGAAATCGAAGATACAAAACATCTCGAGATTGTAAACGATTTCGAATTTTATTCATCATCTGGAAAGactaatttaatttgtaaaaatcCTCAAAACATTATGAATGTTTCAGATATTGGAATCGCTGAAAATAAGGATAATCaagaATCCAACAATACACTAAAAACAAGCGAAGATACAATAACCTATAGATGTAATGAGTGCAAACAGAATTTTTCCAATGAATTGCTACTAGAAGAACATGAATGTAATTTGAGTGGTAATAAAGGACGAAAATGGAATTGTCCACTTTGTGAAAAGGAATGtactaataaaatgaaattagaaaGGCACGTGACAAATGTGCACTTAGTTTGTATAATATGTGAACGAATGTTTAAAAGTACTATGCTTTTAAAACAACATTTAGGAACTCATAATCCAAAAGATTCATTCAAATGTGATATTTGTAATCAAGGTTTTCGAACTCCACTGTATGTTCGTAAACATAAAAGAAATGTACACTTGAAAGGTGATTTTCAGTGTAAAACATGTTTGAAGAAATTTCAAAACATAATGAGATATAAATACCATTTAACATCGCATGATCCAAGTAAACGATTTTATTGTAAAAGTTGTGATAAATCATTTCGACAACGTATTCCACTATTGATTCATGAACGAAAACATTTACAGGCACAATGTGAGAattgcaaagaatttttttcaaatgaattacTATTAAAGGAACATGAATGCAAATCGATAGATAATAAAGTAAAAAGATTGTATTGTAATCgctgtaaaataaaatttaccaaTAAAGAAGAATTTGAAGAGCACATGGCAAAACTACATAGTGGACCTTATATATGTGATATTTGTGGACgaacttttaaaaatgaatacaaTTTAAAAGGTCATTCAAAAGTGCATAATCCAAATGATTCATACAAATGTGATATTTGTAATCAAGGATTTAAAAGTCCCATTTATCTTAAAAAACATATGAAAGCTTTACATGAAAAAGGTGATTTTCGGTGCGAAACATGTTCGATGAAATTTGAATCCTTTACGAAATTCAATTATCATTTAAGGTCTCATGATCCAAGTAAACAATTTCATTGTAAATTTTGTGATAAATCATTTTTGCAAAGTCATCATTTATATAATCACGAACGAACACATACGGGACTTAGACCGTACCTTTGTAATATTTGTGGAAAAGATTTTTCACAACCTGATTATttcaaattacatttaaaaaaacatagtGGAATAAGGTCCCATGTTTGTAACATTTGTGGAAAAGGCTTTTATACTGGCTTTACTTATAGAGAACACATGCGAATTCATGCAGGCATTAAACCGTTTAAATGTGAAATTTGTGATAAaggttttcaaaagaaaattacactTCAAAATCATATGCGAACTCACACcggtgaaaaaccatttaaatgtgaaatatgtaataaaaaatttgcaCAAAAGCCATATTTAACAAGTCATAAATGTTTCTCAAATAATCGCTATCATACAGGACcggaatataaatataattgtaatgAATGtggtaataaatttaaaaattcgaaaAGTTTAAAAGCACATATTGATCGTGTTCATTTAAAACAACGACGacataaatgtaatttttgtaataaagcATTTCTTCATCCATGTGAACGAAAGGCACATGAACAAGTTCATACAAaacaTATGCCAGCACtttcggaaactgaagtaaAGGAAGAAGACGATACAAAACTTTCagaattcgaaaattttattgttaGCGATGAAATTGAAATCGAAGAAATCATCTTAGATACAAATGAAGATATCTTGGTGTGA
Protein Sequence
MDSEQDDSRYEIHHLCRGCVRVGDETTLFPLFTKDSSLETSYIDLIQAFNFINLKIKKNDGLPQQICKTCIADLTHINNFRKACEKSQIVLKEYFLKHLNKQGENEEIEYDDLEFLNEYEDQIEDITNCEYEEDHSNDITLEEIDDTNHNEIANDFEFTELSENTNSIIKNPEKPKVILDIRINENNEESDDIIETNEDTISYSCGDCKENFSNELLLKEHSCSLNDNKVQNWNCRYCEEEFANEEKLEEHMTNVHFFCSICEQTFITAGILAQHSEIHTPKDIFECDICNQGFRNPYYVTRHKKALHEKGDFQCQICLKKYENIRRFKYHLNSHNPRFHCTKCNKSFIERASLLIHERTHIHTKYTCDNCKESFSNELLLKEHECNSIDNKIKRLYCRRCKIKLSNKEELELHMAKLHSGPYICKFCERAFVSANKLKSHLQVHNPKDAFKCDICNQGFRTGPNLKRHKKALHEKGDFQCENCSMKFETVMKLRYHLKTHDPSKKYYCKYCEKSFLQSTHLNHHERTHTGLRPFLCNVCGRGFNLHDSLKLHLQKHSGVKPYVCKICEKGFYIQYYYKMHMKTHEGIAKLYHCDICGKNVQTKLSLENHIRTHTGERPFKCDICDKNYAYKQLLIAHKCVVNKNDNEIETEGERKYRCNECGSSFKKSKILQAHISRIHLKRRPHKCNICDKAFFLPFERNIHEKSHTDERLHECKICGKPFKNEKAVIAHLRRVHSREKPYECGICLMGFPTYISLETHKTVHSEGKRKEEHENLSKIMNGEQDDLRFEIHQLCRGCVRVGDETTLFPLFVKDSSLETSYIDLIQAFNFINLKIEENDGLPQQICQICIARLSDINKFQKACEKSQDILKEYFLNHLNLKDGDEENEYDELEYLNEYEDEIEGLTNREYEEEHSNDITLEEIDDTSNDEIVKDFEFDTSENVNLIFKNPENTKNVLDILINENNENNKESNNTLEKNEDVISYTCDDCKEDFPSEFLLQEHKCNLSANKIQNLNCQHCEKECANKEALEKHIMKIHRICKICERTFKTAGLLKQHIGIHNPKDTFKCDICNQGFRTHHYLRKHKISVHLKGDFQCKICSMKFQSVMRYKYHLKSHDPNKRFYCKICDKSFRQRTALLIHERKHMHSKFKCDNCKEGFLNELLLKEHKCNLTNKERNFNCRRCKTKWPNKEQLEEHIAKVHNGPHICEICERSFKDVHKLKSHLKVHNPKDSYKCEVCNQGFRTEHYLTKHKKTVHEKGDFQCETCSMKFETVMKLKYHLRSHDPSKQYYCKYCEKSFLQSTHLINHERIHTGLKPFLCNICGKDFNLNDSLKLHLKRHSGVRPFVCNICGQGFYIQYYYKTHMNTHEGTELFSCSFCGKGYRNKLSLNSHVRTHTDMRPFKCDLCRKTFVNKLRLNYHKCTVNKVENEIECSCSECEHMTELSDTEEKEEDDTKLSELGNFIVGDEIEIEEIILDTNEDILIEDIATREYEEGYSNDKTLEEIEDTKHLEIVNDFEFYSSSGKTNLICKNPQNIMNVSDIGIAENKDNQESNNTLKTSEDTITYRCNECKQNFSNELLLEEHECNLSGNKGRKWNCPLCEKECTNKMKLERHVTNVHLVCIICERMFKSTMLLKQHLGTHNPKDSFKCDICNQGFRTPLYVRKHKRNVHLKGDFQCKTCLKKFQNIMRYKYHLTSHDPSKRFYCKSCDKSFRQRIPLLIHERKHLQAQCENCKEFFSNELLLKEHECKSIDNKVKRLYCNRCKIKFTNKEEFEEHMAKLHSGPYICDICGRTFKNEYNLKGHSKVHNPNDSYKCDICNQGFKSPIYLKKHMKALHEKGDFRCETCSMKFESFTKFNYHLRSHDPSKQFHCKFCDKSFLQSHHLYNHERTHTGLRPYLCNICGKDFSQPDYFKLHLKKHSGIRSHVCNICGKGFYTGFTYREHMRIHAGIKPFKCEICDKGFQKKITLQNHMRTHTGEKPFKCEICNKKFAQKPYLTSHKCFSNNRYHTGPEYKYNCNECGNKFKNSKSLKAHIDRVHLKQRRHKCNFCNKAFLHPCERKAHEQVHTKHMPALSETEVKEEDDTKLSEFENFIVSDEIEIEEIILDTNEDILV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-