Xate026570.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:44099171-44103181[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.00068 0.049 14.9 1.1 1 23 70 92 70 92 0.97
2 40 1e-05 0.00076 20.6 2.1 1 23 156 178 156 178 0.99
3 40 0.00015 0.011 17.0 1.4 1 23 184 206 184 206 0.98
4 40 3e-05 0.0022 19.2 2.2 1 23 212 234 212 234 0.99
5 40 5.7e-05 0.0041 18.3 1.4 1 23 240 262 240 262 0.99
6 40 0.00016 0.012 16.9 1.6 2 23 269 290 268 290 0.97
7 40 1.2e-05 0.00089 20.4 0.7 1 23 296 318 296 318 0.97
8 40 0.0016 0.12 13.8 5.6 1 23 324 346 324 346 0.99
9 40 0.0054 0.39 12.1 5.0 1 23 353 375 353 375 0.99
10 40 0.0001 0.0073 17.6 2.4 3 23 383 403 381 403 0.98
11 40 9.4e-06 0.00068 20.8 1.0 1 23 409 431 409 431 0.99
12 40 0.15 11 7.5 6.7 1 23 437 459 437 459 0.98
13 40 4.6e-06 0.00033 21.8 4.2 1 23 465 487 465 487 0.99
14 40 0.006 0.44 12.0 5.2 1 23 494 516 494 516 0.99
15 40 1.7e-05 0.0013 20.0 3.5 1 23 550 572 550 572 0.99
16 40 0.00077 0.056 14.8 5.3 1 23 578 600 578 600 0.98
17 40 5.6e-05 0.0041 18.3 4.2 1 23 606 628 606 628 0.99
18 40 5.7e-05 0.0041 18.3 1.4 1 23 634 656 634 656 0.99
19 40 0.00016 0.012 16.9 1.6 2 23 663 684 662 684 0.97
20 40 1.2e-05 0.00089 20.4 0.7 1 23 690 712 690 712 0.97
21 40 0.0016 0.12 13.8 5.6 1 23 718 740 718 740 0.99
22 40 0.00042 0.031 15.6 4.0 1 23 747 769 747 769 0.99
23 40 8.2e-07 5.9e-05 24.1 2.0 1 23 803 825 803 825 0.99
24 40 8.5e-05 0.0062 17.8 3.0 1 23 831 853 831 853 0.98
25 40 0.00012 0.0084 17.4 1.8 1 23 858 880 858 880 0.98
26 40 0.00022 0.016 16.5 0.2 1 23 886 908 886 908 0.98
27 40 0.0045 0.33 12.4 0.3 5 23 918 936 917 936 0.96
28 40 0.00073 0.053 14.8 4.5 1 23 943 965 943 965 0.99
29 40 8.8e-07 6.4e-05 24.0 4.1 1 23 971 993 971 993 0.99
30 40 2.8e-05 0.0021 19.3 6.7 1 23 999 1021 999 1021 0.99
31 40 0.025 1.8 10.0 7.1 1 23 1027 1049 1027 1049 0.99
32 40 0.00053 0.038 15.3 3.1 2 23 1056 1077 1055 1077 0.97
33 40 9.3e-07 6.8e-05 24.0 1.6 1 23 1083 1105 1083 1105 0.99
34 40 0.00053 0.038 15.3 3.1 2 23 1112 1133 1111 1133 0.97
35 40 2.2e-07 1.6e-05 25.9 1.5 1 23 1139 1161 1139 1161 0.99
36 40 0.00036 0.026 15.8 2.9 2 23 1168 1189 1167 1189 0.97
37 40 1.5e-05 0.0011 20.1 2.5 1 23 1195 1217 1195 1217 0.96
38 40 0.02 1.4 10.3 0.4 4 23 1226 1245 1225 1245 0.96
39 40 0.68 50 5.5 0.1 5 19 1253 1267 1251 1271 0.93
40 40 8.6e-05 0.0063 17.8 1.4 2 23 1303 1325 1302 1325 0.97

Sequence Information

Coding Sequence
ATGCCGGTCGATATTGTAGacataaaatctaatttttctattaaatgtgATTTCGATGAAGAAAGCCAATCTGAATTAATTTCAACGGAACCTTCAATTAAAGAAGAACCAGAATTAATAATAGAAGATGCAtttgaaactgaaaatatacaggaaaatttagaaaaatccAATATAACTCTAGAACAACGATTGGATTTAATTTGGCATAGGTGTACAACATGTGAAGAACGTTTTTCAACTCTCGAAGAATTATCGTTGCATATCGAAAGTCATGTAAAAAGTGAAGAAGAATCTTTTATAGAAGGTTTGAAACACCCCGACGCCCATACCTTTCACTGTGATAATTGTGAAGCAACATTTCTTTTACCAAACTCATTGCATAAGCATCAATGTATTTCTAATTCAAAATTtcctaaaattaataaaacaagagTATTTAAAGATTCACCTTCTAAGAAAAACTTCAAATGTTCACAATGCAATAAATTATACTCTTCCAAGTATGATTTAATAGTTCATCAGCGAACGCATGCAAGAGAACGTCCTTTTAAATGTCAAGAGTGTAGCAAGTCTTTTGGATCTAAAGCTCGTTTACAAACACATCGCTTGATTCATGATGATGAAGAACAATTTAAATGTGGCAAATGTAATCGTGTTTACAGTTCAAAGCAGTATCTCGAAACACATTATCGAATACATACAGGTGAACGTCCTTTTAAATGTGAAGATTGTAGCAAATCTTTTCGAGCTCAAAATAGTTTAGACACACATCGTCGTATTCATaatgaggaaaaaaaaattcaatgtgaTAAGTGTGAGCGTTCGTTTATTTCAAACCACTCTTTCGAAATACATTATCGAATACATACAGGTGAACGTCCTTTTAAATGTGAAGAGTGTGGCCAATCTTTTCGATCTCAAGCTTTCCTAAATGCTCATCGTTTTATTCATTCTaaggaaaaacaatttaaatgcaaatattgcgactttaaaacaaaacatgtGGGTAATTTATCAACCCATATGAAAAAACATGTTACAAATGAGAAACTCTTCAAATGCGATCGCTGTGATAGTTCTTATATTTCAAAGCGATGTCTAAAAATACACTATAGAACACATAGAGGAAACCGTCTTTATGGATGTTCACATTGTGATCAACAATTTCAGCGAAAAGAGAACCTTCGAATGCATATTATGACACATACTGGGGAAAAACCCTTCAAATGTGATGTCTGCGATCTTTCCTTTAATAAAAAGTACGCCCTAGAAACACATTATCGAATACATACAGGAGAACGTCCTTTTAAATGTGAACAATGTAACAAGGGATTTAGATGTCGGTTTCATTTAGTTACGCATAGTCgtattcattttaaagaaaaaccatttaaatgcaagCATTGTGATTATACAACAAAACAGGCGAGTAATTTATCGGCTCATATGAAAAAACATGTTGCGGGCGAAAAACTCTTCAAATGCGATCGCTGTGATCATTCTTATATTACAGAGCGGTGTCTAGAAATACACTATAGAACACATACAGGAAATCATCCTTATCGAGGTCCTCATTCTGATCAACAATTTCTGCAAAAAGATCACCCTCAAATGCATATTATAGCACATACTCGCAAAAAGCCCTTCAAATGTGATATCTGCAATCGTTCCTTTAATAAAAAGCACGGCCTAGAAACACATTATCGAATACATACTGGAGAACGTCCTTTTAAATGTGAACACTGTAGCAGATCTTTTCGAGGTCAGAATAGTTTAGCTAAACACCGCCATATTCATAACGATGAAGAAGAATTTAAATGTGGCAAATGTAATCGTGTTTACAGTTCAAAGCACTACCTCGAAACACATTATCGAATACATACAGGAGAACGTCCTTTTAAATGTGAAGATTGTAGCAAATCTTTTCGAGCTCAAAATAGTTTAGATACACATCGTCGTATTCATAATGAGGAACAAAAAATTCAATGTGATAAGTGTGAGCGTTCGTTTATTTCAAACCACTCTTTCGAAATACATTATCGAATACATACAGGAGAACGTCCTTTTAAATGTGAAGAGTGTGGCCAATCTTTTCGATCTCAAGCTTTCCTAAATGCTCATCGTTTTATTCATTCTaaggaaaaacaatttaaatgcaaatattgcgactttaaaacaaaacatgtGGGTAATTTATCAACCCATATGAAAAAACATGTTACAAATGAGAAACTCTTCAAATGCGATCGCTGTGATCGTTCTTATATTTCAAAGAGATGTCTCCAAATACACTATAGAATACATACAAGAAACCATCCTTATCGAGGTTCTCATTCTGATGAACAATTTCAGCGAAAAAATCACCCTCGAATGCATATTATAACACATACTGGCGAGAAACCCTTCAAATGTGATATCTGCGATCGTTCCTTTAATAGAAAGTATGGCCTAGAAACACATTATCGATCACATACAGGAGAACGTCCTTTTAAATGTGAACATTGTAAGAAATCTTTTCGATCTAAAGATATCTTAGTTGCACATCGTCGTATTCATGGggaaaaacaatttcaatgtGACAAATGTGTTCGTTTCTTTGCTACAAAATACAGCCTAGAAACACATTATCGAGCACATACAGGAGAACATCCTTTTAAATGTGAAGACTGTAGCAAATCTTTTCGATCTAAAGCTATCTTAGTTGCACATGGTCGTGTTCACTCCAAGGAAAAACcattgaaatatgaaaattgcGATTATACAACAAAACAGGCAAGTGAATTATCGTCCCATATGAAAAAACATGTTACAGGTGAGAGGTTCTTCAAATGCGATCGCTGCAATCGTTCTTATATTACAAAGCAGTGTCTACAAATACACTATAGAATACATACAAGAAACCGTTCTTTTCGATGTTCACATTGTGATAAACAATTTACACGAAGCGATCAACTTCGAATGCATATTATGACACACACTGGCGAGAAACCCTTCAAATGTGATCTCTGTGACCGTTCCTTTACTACAAAGCACTGCCTAGAAATACATTATCGAACTCATACAGGACAACGTCCTTTTAAATGTGAACACTGTAGCAGATCTTTTCGATGTCAAAATTATTTAGCTACACATCGTCGTATTCATAATATGGAAGAGCAATTAAAATGCGATCGCTGCGATCGTTCTTATATTACAAAGCAGTGTTTAGAAATACATTATCGAACTCATACAGGAGAACGTCCTTTTAAATGTGAACAATGTAACAAGGCATTTAGATCTCAGACTAATTTAGCTACACATCGTCGTATTCATAATGAGGAAGAGCAATTAAAATGCGATCGCTGCGATCGTTCTTATATTACAAAGCAGTGTTTAGAAATACATTATCGAACTCATACAGGAGAACGTCCTTTTAAATGTGAACAATGTAACAAGGCATTTAGATCTCAGTCTAATTTAGCTACACATCGTCGTATTCATAATGAGGAAGAGCAATTAAAATGCGATCGCTGCGATCGTTCTTATGCTACGAAGCAGTGTTTAGAAATACATTATCGAACTCATACAGGAGAACGTCCTTTTAAATGTGAACAATGTAACAAGGCATTTAGATCTCAGTCTAATTTAGTTGCGCATTGTCGTATTCATTCGAAAGAAAACCCAGTGGATAACAACTATTGTGATTATACAACAAAACAGGATGATAATTTATCATCCCATATTAAAAAACATACTATTGGCGAGAAATCGTTGAAATGTGATCGTTCGTATGCTACAAAACAACTTCTAGCAAAACATGATCTACTACATTCCGATAAATATGCAGTTTCTGAATGTCGATTTTCACCACGAGTTATTTTAAGGAGGCTACAAATAAAACATGAGCCAATAATTATGCGTAACCAGTGTCATCTTTGTAATGAAAGTTTTGAATACAGCGAACAACTTAAACAACATATTCAAATTTATCATCAGAAAGTAATTTGTAGAGTTAAATATACgaaataa
Protein Sequence
MPVDIVDIKSNFSIKCDFDEESQSELISTEPSIKEEPELIIEDAFETENIQENLEKSNITLEQRLDLIWHRCTTCEERFSTLEELSLHIESHVKSEEESFIEGLKHPDAHTFHCDNCEATFLLPNSLHKHQCISNSKFPKINKTRVFKDSPSKKNFKCSQCNKLYSSKYDLIVHQRTHARERPFKCQECSKSFGSKARLQTHRLIHDDEEQFKCGKCNRVYSSKQYLETHYRIHTGERPFKCEDCSKSFRAQNSLDTHRRIHNEEKKIQCDKCERSFISNHSFEIHYRIHTGERPFKCEECGQSFRSQAFLNAHRFIHSKEKQFKCKYCDFKTKHVGNLSTHMKKHVTNEKLFKCDRCDSSYISKRCLKIHYRTHRGNRLYGCSHCDQQFQRKENLRMHIMTHTGEKPFKCDVCDLSFNKKYALETHYRIHTGERPFKCEQCNKGFRCRFHLVTHSRIHFKEKPFKCKHCDYTTKQASNLSAHMKKHVAGEKLFKCDRCDHSYITERCLEIHYRTHTGNHPYRGPHSDQQFLQKDHPQMHIIAHTRKKPFKCDICNRSFNKKHGLETHYRIHTGERPFKCEHCSRSFRGQNSLAKHRHIHNDEEEFKCGKCNRVYSSKHYLETHYRIHTGERPFKCEDCSKSFRAQNSLDTHRRIHNEEQKIQCDKCERSFISNHSFEIHYRIHTGERPFKCEECGQSFRSQAFLNAHRFIHSKEKQFKCKYCDFKTKHVGNLSTHMKKHVTNEKLFKCDRCDRSYISKRCLQIHYRIHTRNHPYRGSHSDEQFQRKNHPRMHIITHTGEKPFKCDICDRSFNRKYGLETHYRSHTGERPFKCEHCKKSFRSKDILVAHRRIHGEKQFQCDKCVRFFATKYSLETHYRAHTGEHPFKCEDCSKSFRSKAILVAHGRVHSKEKPLKYENCDYTTKQASELSSHMKKHVTGERFFKCDRCNRSYITKQCLQIHYRIHTRNRSFRCSHCDKQFTRSDQLRMHIMTHTGEKPFKCDLCDRSFTTKHCLEIHYRTHTGQRPFKCEHCSRSFRCQNYLATHRRIHNMEEQLKCDRCDRSYITKQCLEIHYRTHTGERPFKCEQCNKAFRSQTNLATHRRIHNEEEQLKCDRCDRSYITKQCLEIHYRTHTGERPFKCEQCNKAFRSQSNLATHRRIHNEEEQLKCDRCDRSYATKQCLEIHYRTHTGERPFKCEQCNKAFRSQSNLVAHCRIHSKENPVDNNYCDYTTKQDDNLSSHIKKHTIGEKSLKCDRSYATKQLLAKHDLLHSDKYAVSECRFSPRVILRRLQIKHEPIIMRNQCHLCNESFEYSEQLKQHIQIYHQKVICRVKYTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-