Xate026571.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylophagus ater
Gene Symbol
-
Assembly
GCA_963422695.1
Location
OY730484.1:44105778-44109800[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.001 0.075 14.4 0.9 1 23 71 93 71 93 0.97
2 43 0.0021 0.15 13.4 2.1 1 23 113 136 113 136 0.97
3 43 2.1e-05 0.0015 19.7 4.4 1 23 157 179 157 179 0.99
4 43 1.7e-05 0.0012 20.0 1.3 1 23 185 207 185 207 0.99
5 43 0.00074 0.053 14.8 3.5 1 23 213 235 213 235 0.99
6 43 4e-06 0.00029 21.9 5.0 1 23 241 263 241 263 0.99
7 43 0.0025 0.18 13.1 6.1 1 23 269 291 269 291 0.98
8 43 0.004 0.29 12.5 7.2 1 23 298 320 298 320 0.99
9 43 3.5e-05 0.0025 19.0 3.5 1 23 326 348 326 348 0.99
10 43 0.00092 0.066 14.5 5.6 1 23 354 376 354 376 0.99
11 43 2.3e-05 0.0017 19.6 3.3 1 23 382 404 382 404 0.98
12 43 9.6e-06 0.00069 20.8 0.8 1 23 410 432 410 432 0.99
13 43 0.025 1.8 10.0 4.3 1 23 438 460 438 460 0.89
14 43 1.1e-06 7.7e-05 23.8 1.2 1 23 466 488 466 488 0.99
15 43 0.00017 0.013 16.8 3.0 1 23 494 516 494 516 0.98
16 43 3.3e-06 0.00024 22.2 0.9 1 23 522 544 522 544 0.99
17 43 0.00012 0.0088 17.3 1.0 1 23 550 572 550 572 0.98
18 43 1.9e-06 0.00014 22.9 0.4 1 23 578 600 578 600 0.99
19 43 0.0003 0.022 16.1 6.5 1 23 606 628 606 628 0.96
20 43 9.1e-06 0.00066 20.8 2.7 1 23 634 656 634 656 0.99
21 43 4.8e-06 0.00035 21.7 0.8 1 23 662 684 662 684 0.99
22 43 0.00029 0.021 16.1 3.6 1 23 689 711 689 711 0.99
23 43 8.6e-07 6.2e-05 24.1 2.3 1 23 717 739 717 739 0.98
24 43 2.4e-05 0.0018 19.5 3.6 1 23 745 767 745 767 0.99
25 43 0.0075 0.55 11.7 6.4 1 23 774 796 774 796 0.99
26 43 3.5e-05 0.0025 19.0 3.5 1 23 802 824 802 824 0.99
27 43 8.7e-05 0.0063 17.7 5.7 1 23 830 852 830 852 0.99
28 43 1e-05 0.00072 20.7 2.6 1 23 858 880 858 880 0.99
29 43 3.1e-06 0.00023 22.3 4.1 1 23 886 908 886 908 0.99
30 43 0.00029 0.021 16.1 3.9 1 23 915 937 915 937 0.99
31 43 9.9e-07 7.2e-05 23.9 1.9 1 23 943 965 943 965 0.99
32 43 2.8e-06 0.0002 22.4 1.7 1 23 971 993 971 993 0.99
33 43 0.0013 0.094 14.1 2.6 1 23 999 1021 999 1021 0.98
34 43 4.3e-05 0.0031 18.7 4.1 1 23 1027 1049 1027 1049 0.99
35 43 2.2e-06 0.00016 22.8 0.4 1 23 1055 1077 1055 1077 0.99
36 43 1.3e-05 0.00096 20.3 4.1 1 23 1083 1105 1083 1105 0.99
37 43 0.0029 0.21 13.0 3.8 1 23 1112 1134 1112 1134 0.99
38 43 5.3e-05 0.0038 18.4 1.4 1 23 1140 1162 1140 1162 0.99
39 43 0.00027 0.02 16.2 3.9 2 23 1169 1190 1168 1190 0.97
40 43 6.1e-07 4.4e-05 24.5 1.1 1 23 1196 1218 1196 1218 0.99
41 43 0.01 0.76 11.2 2.5 1 23 1224 1246 1224 1246 0.98
42 43 0.018 1.3 10.4 1.4 1 19 1253 1271 1253 1275 0.94
43 43 0.00038 0.028 15.7 1.6 2 23 1307 1329 1306 1329 0.96

Sequence Information

Coding Sequence
ATGCCAGAAGAAATTGTAGAGAAAATACCTCATTTTGctaataaatatgattttattgaaaaaagccAATCATCTGAATTAATTTTAACGGAATTCCCAATAAAAGAAGAACCAGAATTAATAATAGAAGATGAATTTGAAGCAGAAGATATACaggaatatttacaaaattgtgATATAACACTAGAAGAACAATTGGATTTAATTTGGCATAGCTGTACAACATGTGAAGAACGTTTTTCAACTCTCGAAGAATTATCGTTGCATATCGAAAGTCATGTAAAAAGTGAAGAAGAATCTTTTATAGAAGTTTTGAAGCACCCCGATGACCATACCTTTCATTGTGATCTTTGCAAAGCGAAATTTGTTTTCCCGAACTCATTGATTAAGCATCAAcgtatttttcattcaaaatttcctaaaattaataaaacaagagTATTTAAAGATTCACAttctaaaaaaaacttcaaatgtTCACAATGTAATAAATTATACTCTTCGAAGCATAATTTAATAGTTCATCAGCGAACGCATACAGGAGAACGTCCTTTTAAATGTGAACAGTGTGAAAAATCTTTTCGATCACAAGGTGTTTTAATTACACATCGTCGTAGTCATAATGAGGAAGAACAATTTAAATGTGATCAGTGTGATTGTGCGTATAATTCAAAGCAATATCTTGAAACACATTATCGAATACATACAGGAGAACGTCCTTTTAAATGTGAACATTGTAGCAAATCTTTTCGGTCTAAAACTAATTTAGTTACACATCGGCGTATCCATTCTGaggaaaaaccattcaaatgcaaatATTGTGATTACACAACAAAACATGCCAGTAATTTGTCATTCCATATGAAGAAACATGTTGCTGGCGAGAAGCTCTTCAAATGCGATCGCTGTGATCATTCTTATATTACAAAGCAGTGTCTAAAAATACACTATAGAACACATACAGGAAACCGTCCTTATCGATGTTCTCATTGTGATCAACAGTTTATGCGAAAAGAGAGCCTTCGAATGCATATTATGACACATACTGGCGAGACGCCCTTCAAATGTGATCTGTGCGATCGTTCATATACTACAAAGCACTGTTTAGATATACATTACCGGATACACACAGGAGAACGTCCTTTTAAATGTGAACACTGTAACAAGTCTTTTCGATCTCAATCTGTGTTAGTTACACATAGTCGAATCCATAATGaggaaaatcaatttaaatgtGACCGCTGTGGTCGTGCTTACAGCTCAAGGATTAATTTGGAAACACATTATCGAATACACACAGGAGAACGTCCTTTTAAATGTGAACACTGTAAAAAATCTTTTCGATCTCAAGCTGTTGTAATTATGCATTGTCGTATCCATAATGaggaaaatcaatttaaatgtGATCAGTGTGATCGTTCCtttattacaaaacaaaatctAGAAATACATTATCGAATACACACAGGAGAACGTCCTTTTAAATGTGAACATTGTAGCAAGTCTTTTCGATCTCAAGCTGTTTTAGTTACACATAGTCGCAGTCATAATGAGGAAGAGCAATTTAAATGTGATCAGTGTGATCGTGCTTATAGTTCAAAGGTCAATCTGGAAACACATTATCGAATACACACAGGAGAACGTCCTTTTAAATGTGAACAATGTGAGAAATCTTTTCGATCTCAAGCTGTTTTAGTTACACATAGTCGCAGCCATAATGAGGAAGAACAATTTAAATGTGATCAGTGTGATCGTGCTTATAGTTCAAAGGTCAATCTGGAGGCACATTATCGAATACACACAGGAGAACGTCCTTTTAAATGCGAACATTGTAGCAAATCTTTTCGATCTCAAACTAATTTAATTAGTCACTGTCGTATCCATAATGAAGAAaagccatttaaatgtgataAATGTGATCGTGCTTATAGTTCAAAGCAGTATCTCGAAACACATTATCGAACTCATACAGGAGAACGTCCTTTTAAATGTGAACAGTGTGAAAAATCTTTTCGATCTCAAGCTGGTTTAGTTACACATCGTCGTATTCATaacgaaaaacaatttaaatgtgATAAATGTGACAGTGCGTATAGTACAAAGCATTATCTCGAAACACATTACCGGATACACACAGGAGAACGTCCTTTTAGATGTGAAGAGTGTAGCAAATCTTTTCGGTcgaaaactaatttaattacACATCGCCGTATCCACTCTGaggaaaaaccattcaaatgcaaatATTGCGATTATACAACAAAACAAGTCAGTAATTTGTCATCCCATATGAAGAAACATGTTACTGGCGAGAAGCTCTTCAAATGCGATCGCTGTGATCATTCTTATATTACAGAGCGGTGTCTAAAAATACACTATAGAACACATACAGGAAACCGTCCTTATCGATGTTCTCATTGTGATCAACAGTTTATGCGAAAAGAGAGCCTTCGAATGCATATTatgacacatactggagaaaaaccCTTCAAATGTGATGTCTGCGATCGTTTCTTTAGTACAAAGCACTGCTTAGAAATACATTATCGAATACATACAGGAGAACGTCCTTTTAAATGTGAACAATGTAGCAAATTTTTTCGGTCTAAAACTAATTTAGTTGTGCATCGTCgtattcattttaaagaaaaaccatataaatgcaAGCATTGTGATTATACAACAAAACAGGCGAGTAATTTATCGGCTCATATGAAAAAACATGTTGCGGGCGAGAAACTCTTCAAATGCGATCGCTGTGATCATTCTTATATTACAAAGCGGGGTCTAAAAATACACTATAGAACACATATAGGAAAGCGTCTTTATCGATGTTCTCATTGTGATCAACCATTTATACGAAAAGAGAACCTTCGATTACATATTATGACACATACTGGGGAAAAACCCTTCAAATGTGATCTCTGCGATCGTTCCTTTAGTACAAAGTACCGCCTAGTAATACATTTACGGACACACACAGGAGAACGTCCTTATAAATGTGAACACTGTAGCAAAACTTTTCGATCTCAACCTGTTTTCGCTATGCATAGTCGTATTCATAATAAGGAAGAACAATTTAAATGTGATCAGTGTGATCGTGCTTATAGTTCAAAGCATTATCTCGAAACACATTATCGATCACATACAGGAGAACGTCCTTTTAAATGTGAAGAGTGTAACAAATCTTTTCGAGCTCAAGTTAACTTAGTTGCACATCGTCGTATCCACTCTAaggaaaaaccatttaaatgcaagCATTGCGATTATGCAACAAAACAGGCGAGTAATTTATCATCACATATGAAGAAACATCTTCCTGGCgataaaccatttaaatgtgatcgcTGTGATCGTTCTTATATTACAGGACAGTGTCTAAAAATACACTATAGAACACATACAGGAGAACGTCCTTTTAAATGTGAACAGTGTGAGAAATCTTTTCGATCTCAATCTATTTTAATTACACATCGTCGTATTCATAATGAGGAAGAGCATTTAAAATGCGACCGCTGCGATCGTTCTTATACTACAAAGCAGTGTTTAGAAATACATTATCGAACTCATACAGGAGAACGTCCTTTTAAATGTGAACAATGTAACAAGGCATTTAGATCCCAAACTAATTTAGTTGCGCATCGTCGTATTCATACGagagaaaaaccatttaaatgtagCTCTTGTAATTATGCAACGAAACAGGCGAGTAATTTATCATTCCATATGAAAAAGCATATTACTAAGGAGAAATCTTTCAAATGTGATAAATGTGGTGATTCTTATGCTACAAAACACCTTCTAGCAAGACATGATCAACTACATTCCGATAAATATGCAGTTTCTGAACGTCGAATTTCACAACGTATTATTTTAAGGAGGCAACAAAGAATTCATAAGCCAATAATTATGGGTGATCAATGTCATCTTTGTGATCAAACTTTTAGATACAGCGAACAAATTAAGCAACATATTCAAATTTATCATCAGAAATCAATCATCAGAATTAAATCTAGGAAATAA
Protein Sequence
MPEEIVEKIPHFANKYDFIEKSQSSELILTEFPIKEEPELIIEDEFEAEDIQEYLQNCDITLEEQLDLIWHSCTTCEERFSTLEELSLHIESHVKSEEESFIEVLKHPDDHTFHCDLCKAKFVFPNSLIKHQRIFHSKFPKINKTRVFKDSHSKKNFKCSQCNKLYSSKHNLIVHQRTHTGERPFKCEQCEKSFRSQGVLITHRRSHNEEEQFKCDQCDCAYNSKQYLETHYRIHTGERPFKCEHCSKSFRSKTNLVTHRRIHSEEKPFKCKYCDYTTKHASNLSFHMKKHVAGEKLFKCDRCDHSYITKQCLKIHYRTHTGNRPYRCSHCDQQFMRKESLRMHIMTHTGETPFKCDLCDRSYTTKHCLDIHYRIHTGERPFKCEHCNKSFRSQSVLVTHSRIHNEENQFKCDRCGRAYSSRINLETHYRIHTGERPFKCEHCKKSFRSQAVVIMHCRIHNEENQFKCDQCDRSFITKQNLEIHYRIHTGERPFKCEHCSKSFRSQAVLVTHSRSHNEEEQFKCDQCDRAYSSKVNLETHYRIHTGERPFKCEQCEKSFRSQAVLVTHSRSHNEEEQFKCDQCDRAYSSKVNLEAHYRIHTGERPFKCEHCSKSFRSQTNLISHCRIHNEEKPFKCDKCDRAYSSKQYLETHYRTHTGERPFKCEQCEKSFRSQAGLVTHRRIHNEKQFKCDKCDSAYSTKHYLETHYRIHTGERPFRCEECSKSFRSKTNLITHRRIHSEEKPFKCKYCDYTTKQVSNLSSHMKKHVTGEKLFKCDRCDHSYITERCLKIHYRTHTGNRPYRCSHCDQQFMRKESLRMHIMTHTGEKPFKCDVCDRFFSTKHCLEIHYRIHTGERPFKCEQCSKFFRSKTNLVVHRRIHFKEKPYKCKHCDYTTKQASNLSAHMKKHVAGEKLFKCDRCDHSYITKRGLKIHYRTHIGKRLYRCSHCDQPFIRKENLRLHIMTHTGEKPFKCDLCDRSFSTKYRLVIHLRTHTGERPYKCEHCSKTFRSQPVFAMHSRIHNKEEQFKCDQCDRAYSSKHYLETHYRSHTGERPFKCEECNKSFRAQVNLVAHRRIHSKEKPFKCKHCDYATKQASNLSSHMKKHLPGDKPFKCDRCDRSYITGQCLKIHYRTHTGERPFKCEQCEKSFRSQSILITHRRIHNEEEHLKCDRCDRSYTTKQCLEIHYRTHTGERPFKCEQCNKAFRSQTNLVAHRRIHTREKPFKCSSCNYATKQASNLSFHMKKHITKEKSFKCDKCGDSYATKHLLARHDQLHSDKYAVSERRISQRIILRRQQRIHKPIIMGDQCHLCDQTFRYSEQIKQHIQIYHQKSIIRIKSRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-