Xate005004.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730478.1:62121037-62123494[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.2 2.5e+03 -0.6 0.2 17 24 181 188 170 193 0.75 2 6 2.1e-06 0.0043 17.9 2.2 14 43 206 232 198 233 0.85 3 6 0.0043 8.9 7.3 0.7 17 38 293 311 280 315 0.85 4 6 0.03 62 4.6 0.0 16 37 320 343 313 348 0.81 5 6 0.075 1.6e+02 3.3 0.8 16 30 348 362 338 372 0.78 6 6 0.0019 4 8.4 0.6 15 33 375 395 366 399 0.79
Sequence Information
- Coding Sequence
- ATGTTATTATCGGCGTCTAATTTGAACCACAGTTATTTAAGTATCACGCAACAATGTTTGCAAACTGAAATAACTTTAAAAGACATATTTCAAAGTCCTGATTTCATAAAGAAAGAAGACGGTTGTGAAAGTGTTTTACCAAATTTGCCAGAAAATAATATGGAAGGTCCCCAAACAAGACGAAGAAAGAAACTGCCAAAACACACGGAATCACCAAATACTTCTCATCAATATGAAGAAGTGAAGAAAGAAGAACAGCTTTGGAAAGAAGACAGCTTTGGTAATGATCGAGACTTCGCAGAAGATTTGACTGAACAACATGCAGAGGAAGTCGAGAAAacgaaagaattagaaaaatttgaaaGTGATAAGAATTGCGATGAATCAGATAATGATAGGAATGAAGAATCAAATTCAGAAGATTATTTAATTTCGGATTATTCAGtgaatgatgatgataattCCAACTCAGAGACATCAActaaatttgttataaaatgGAGGAGTAAAACAAAAAACCCAATAAAACGTAAATTTCCATTTGAATGTCATATTTGTAATCGAGGATTCATCTATGAAGAAATGTTTGACGGACACATGAGAGAACATGAAGGAGGAAGTgCTGCTATTTGCGAATATTGCAGTAATGGATATAGCAATATGTCTGGCTTACGGCAACATATTAAAAGGTGTCAtatgaatgaaatgaaatatcgGTGTGATTGtggaaaaaattttatattgaaaagtgCATTGGAAAGACATCGAACCTCTCATTACGGACCCCAAAGATATATTTGTGAAACTTGTGGGATATTATGTCGTGACTCTGATCATCTTAAGggaCATTCTCTTGTTCATACGGATAAGAGACCCTTCCAATGCAAAACCTGTGGTAAAGATTACAAATCTGAGAAAAATTTACGTGCTCATGAATTTCGTCATACTGGAATTAGAAAGTTTAAGTGTGAAGTTTGTGGAAAACCGTTTGTGAGACGTCCTGAATTACAATCTCATATGTTAATTCATACTTTGGTGAAGGCATATAAATGTACACTCTGTGAAAAAGATTTCcgttataaaaatcaattagatGTTCATATGCGAATgcataccggagagaaaccatttaaatgtcaAATATGTGGAAAAACGTTTGCACAAAAATCTGCTTTAAATACTCACGCAAAAACTCAttcaagaaattaa
- Protein Sequence
- MLLSASNLNHSYLSITQQCLQTEITLKDIFQSPDFIKKEDGCESVLPNLPENNMEGPQTRRRKKLPKHTESPNTSHQYEEVKKEEQLWKEDSFGNDRDFAEDLTEQHAEEVEKTKELEKFESDKNCDESDNDRNEESNSEDYLISDYSVNDDDNSNSETSTKFVIKWRSKTKNPIKRKFPFECHICNRGFIYEEMFDGHMREHEGGSAAICEYCSNGYSNMSGLRQHIKRCHMNEMKYRCDCGKNFILKSALERHRTSHYGPQRYICETCGILCRDSDHLKGHSLVHTDKRPFQCKTCGKDYKSEKNLRAHEFRHTGIRKFKCEVCGKPFVRRPELQSHMLIHTLVKAYKCTLCEKDFRYKNQLDVHMRMHTGEKPFKCQICGKTFAQKSALNTHAKTHSRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540832;
- 90% Identity
- iTF_01540832;
- 80% Identity
- iTF_01540832;