Xate028180.2
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730485.1:22132769-22135709[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.3 4.7e+03 -1.4 0.1 10 22 10 19 7 21 0.70 2 8 2e-05 0.041 14.8 1.4 9 41 150 180 146 182 0.84 3 8 0.094 1.9e+02 3.0 0.0 14 26 201 213 195 222 0.81 4 8 5.6e-05 0.12 13.3 3.0 6 40 237 268 235 272 0.91 5 8 4.6e-05 0.094 13.6 0.7 17 41 282 303 273 305 0.85 6 8 0.64 1.3e+03 0.3 0.5 17 30 310 323 304 333 0.77 7 8 0.0039 8.1 7.4 2.3 18 40 339 358 323 360 0.85 8 8 0.22 4.5e+02 1.8 4.0 18 41 367 387 365 418 0.87
Sequence Information
- Coding Sequence
- atgaaaacggAATTAGAATTTCGTGAATTGGATTTGAAGAATACTTGCAGGACTTGCTTATTTcaatgtgtagaattaaattcgatatttgaaGTTAGtgaaattgatgagaaaatactcagtgaaattttaatggcttgctcagaaacgaagattagtgctggcgatggtcttccggagcaaatatgTACCGAATGTACGAAACAAGTTGTAAAtgcatataattttaaactgaaatgtcaAGAAAGTGAAAACTTTCTATTGAATTATGTtgaaaaatatgcagataaaccggaagaaaataaaatagaacccaatttaaatataaaaacagaacTTTATGAAGAACCATTAATACCAACTTTAAATAtaagcatttcacaagaaaatattgataaaatttcCGATAACGGAGATACAAATGGTGCAAATGATTCCTATCACAGTGAGAACGAAGCAAAAGATAAAAAGAAGTTTCCTTgtgaattttgtaataaaatttatgcACATAAAAAATCTCTTTGGCGACATTTAAAAactcatccaaaaaaaaatttaagaataagTACACTTCGAAATAAAGacGCTAATGCAGAACATTCCAACGACTTAGTTTGTACATATTGTGGAGAGGAATTTCCAACAAAGTTACGGATTCTCTTACATAAATGCAGTTTCCAAAATATAAGGCAAGAACATCTTGATCGACATATGAATATACATCAACCGGATGATAAAAAGTTCGAATGTGTTGAAtgtcataaaaaattcaatCGAAAAGATAATATGAAATCTCATATGAAAATTCATCGTGAAGATCGTGACAAAGATGAATCTGATAAACAATTATGTGTGTATTGTGGTCGACGATTTTCAAATTCATCGAATTTAATTGTTCATATGCGACGTCATACTGGAGAGAAACCATATAAATGTGATATTTGTGATAAAGGTTTTCCGCGATCATCGGATTTACAATGTCATCGAAGAACACATACAGGTGAAAAGCCTTGTCTATGCACAATATGTGGAAAGGgATTTTCTAGATCAAATAAATTAGTACGTCATATGAGAATTCATACAGGTGTCCGACCATATAAATGTACCTACTGTGAACGGGCTTTCACACAATCAAATGATTTAACACTTCATATACGAAGGCATACCGGCGATAAACCTTATGTATGTGGAATATGCGGAGATCGATTTATTCAAGGAACAGCACTTCAAACACATCGAAGAATGAAAGGTCACTATGAAGAAGGAAATCGTGAAGCTCCATATTCTAGTATTAGTGTAAATAATCCAAATCGTATGAATTTTGCAAATCGTGTTGATCGTATTGGCTTACCAAAAACTGAATCAGTACGTCCACTTGAAATTAAACCTGTCGGTCGTGGAAATTCGCGTTTATCAACAATACCAATTGGACGTGAAACGGAACAAAATGTTTCGAGTCCAATAGATTCAATAAGAAATGTGATTCCAGCTAGTGAAACGTTAAAAAATCTTACAAGTTTTATTCAACCAAACACATCAGTCTCGGGACCAAACAGTAGTGCATACCCCCCGAACGTTCCGTTTATGCAATTTGGAGAAAATGAATTGTTTTCAATATCAAATATGAATTATAATCAACCGTTTCAATga
- Protein Sequence
- MKTELEFRELDLKNTCRTCLFQCVELNSIFEVSEIDEKILSEILMACSETKISAGDGLPEQICTECTKQVVNAYNFKLKCQESENFLLNYVEKYADKPEENKIEPNLNIKTELYEEPLIPTLNISISQENIDKISDNGDTNGANDSYHSENEAKDKKKFPCEFCNKIYAHKKSLWRHLKTHPKKNLRISTLRNKDANAEHSNDLVCTYCGEEFPTKLRILLHKCSFQNIRQEHLDRHMNIHQPDDKKFECVECHKKFNRKDNMKSHMKIHREDRDKDESDKQLCVYCGRRFSNSSNLIVHMRRHTGEKPYKCDICDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCTYCERAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALQTHRRMKGHYEEGNREAPYSSISVNNPNRMNFANRVDRIGLPKTESVRPLEIKPVGRGNSRLSTIPIGRETEQNVSSPIDSIRNVIPASETLKNLTSFIQPNTSVSGPNSSAYPPNVPFMQFGENELFSISNMNYNQPFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -