Xate021516.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- ttk
- Assembly
- GCA_963422695.1
- Location
- OY730482.1:49968152-49969938[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-17 7.9e-14 52.0 0.0 2 42 433 474 432 477 0.95
Sequence Information
- Coding Sequence
- ATGtcaacacaaaaattttgtgTGCGTTGGAACAATCATCAACCTAATTTCATATCAGTGCTCACGTCACTTTTACATAATGGCACATTAGTTGATGTTACACTAGCAGCCGAAGGAAGACAATTACAGGCTCACAAAGTTGTTTTGTCGGCATGCAGTTcatattttcagaCATTATTCACAACAAATCCATGTCAACAtccaattattatattaaaagatGTACAATACAATCATCTAAAAATAATGGTCGATTTTATGTATTACGGTGAAGTAAACGTATCACAAGAACAATTACCGCACATATTAAAAACAGCAGAAATGTTAAAAATCAAAGGTTTAACTGAAATGACTGATGAGTCTTCATTGAATTGTGAAAATAGATCATCATTCGAACCGAGTAATCAATTGCAAGGTAATGGAGGAAATGGAAACGATGGAGAATcacaatttcaacaacaacaccaacatcatcatcatcaacagcagcagcaactacagcaacaacaacatcaacaagcAAGTCAGCAACATGAACAACGGAGAACTCCTTCGCCAAGTGGTGTATCCGGTGTATCGCCATCAACTAGAAGAAAACGTTTAAGAAAATCTCCAAATAGTgGTTCAACAGAAAGAATGCCCGAAGAACAAAGTAGTGTTGAAGATTCTTCCAATATAAATCTATCACAAATGGATCAAATGTCATTTAGTGGtccaacaacaacaaatttaGGGCAAAATATTTATCCGAAAGTAATTAAAGACAGTTCAAGTACAGATACCGATACACATCCGCAAGATTCATCACAAGACGGTATCGAAGATTCAACGCCTACCCATCAACATattaaaCCCGAAACTGATATTTCTAGTGTACAACAATCAATACCATTAGATATATCTGGTCCAGGAACACCATCGGAACTTAGAACACCATCACCTAGTTGCTCTCAACCTCAATCTTCTCATTcagaTTCGCCTTCTTCTTTCACTGGTGAGCTTTGGACAGTTGTTGATTCAAAATATACATCATTTACATCGAAtatatcatcattatcatcattatcataTGATGATAATAATCAACAATGTACAAAAGATAATGATAAAATGACAACAAAACGACGGAAAGAAAATGCTGTTACATCGAATCCAAGagaaaattcacaattacatCATTCAGATTCATTGCGTTTCTCACGAAATTTATCCACATCAAAGGATAGTAGCTATGGTGGTAATACCTCATCGCAACAAATACGACGAAAACGAAAATGGACAAATAATCCACAAGGCGATGAGAATTTCTTGTATGCCCTAGAAGCTGTTCGAAGCGGTGGCATTGGGTTTTGTAAAGCAGCACGTCTATATGGTGTTAATAATCGTACATTATGGTTAGAATATAAGAAACGTGGCTATCCAATATGTCGACCAAGTATTAAAAATCGTAAAGCATCAAAAGAGTCTCTTAAAATTTAA
- Protein Sequence
- MSTQKFCVRWNNHQPNFISVLTSLLHNGTLVDVTLAAEGRQLQAHKVVLSACSSYFQTLFTTNPCQHPIIILKDVQYNHLKIMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLTEMTDESSLNCENRSSFEPSNQLQGNGGNGNDGESQFQQQHQHHHHQQQQQLQQQQHQQASQQHEQRRTPSPSGVSGVSPSTRRKRLRKSPNSGSTERMPEEQSSVEDSSNINLSQMDQMSFSGPTTTNLGQNIYPKVIKDSSSTDTDTHPQDSSQDGIEDSTPTHQHIKPETDISSVQQSIPLDISGPGTPSELRTPSPSCSQPQSSHSDSPSSFTGELWTVVDSKYTSFTSNISSLSSLSYDDNNQQCTKDNDKMTTKRRKENAVTSNPRENSQLHHSDSLRFSRNLSTSKDSSYGGNTSSQQIRRKRKWTNNPQGDENFLYALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPICRPSIKNRKASKESLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540494;
- 90% Identity
- iTF_01540494;
- 80% Identity
- iTF_01540494;