Xate021082.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- bab1
- Assembly
- GCA_963422695.1
- Location
- OY730482.1:42125828-42127195[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-17 2.8e-14 53.4 0.0 1 43 28 71 28 73 0.95 2 3 4.5 1.2e+04 -3.0 0.1 12 21 147 155 147 158 0.83 3 3 0.17 4.3e+02 1.6 0.2 2 15 163 176 162 181 0.85
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAATACAAATCAAAATCTAATGCATCATCTGAGATTTCGTGAACGTGGTCCATTAAAATCATGGCGTCCCGAAACAATGGCCGAAGCGATATTTAGTGTATTAAAAGAAGGTCTATCATTATCACAAGCGGCAAGAAAATATGACATTCCATATCCGACATTTGTTTTGTACGCGAATCGTGTTCACAATATGCTTGGACCATCGATCGATGGTGGAACAGATTTACGACCAAAGGGTAGAGGAAGACCACAACGTATACTATTAGGAATTTGGCCAGATGATCATATTAAAGGTGTTATTAAAACGGTTGTATTTCGTGATGCAAAAGAACTTAAAGATGAAGGAATGCATTTAGCCTATGGAAGACATTCGccAGTTTTTCCATTTCAAGAAGGTGCTATGACTTATCCTGGTCCTGGATGTGCAAATGGTTTATCTCAACAGCAATCCGGATCCGAATCAATGTCACCTGAAGCAACAGCAGCAGCTGTGGCAGCTGTTGCACACGGTATACGACAACAAATGCAAATGGCTGCTGTTGCACAACATCATTCAGATGGTTCTGGCAATATGTTTACATTACCATCACATTTacattcaaataataataataacaataataataataataataataataataataataataatggtggTTCCGGTTCAGTACCATTgccaaaacaaaattcaccagCATCCGGTGGACAAATCAATTCATCAAATTCTCAAAGACATACATCACTATCAATAACAGGTCTTCCCAATCCCGCATCACTAGGTATACCTGGTATACCAGGTCTACATATTATTCCCGGTCTAAGTAGCTCTAATGCTAGTCAAACAACATCACATAATTCAACATCATATTCTTCTTCCAATGCAAGTAATCTACAAACATCAATCGCACCATCCCATATACAATTAaatacatcatcatcatcatcatcaaatcCATCAATGCATCATATGCAACGTAACGAATCACCATCAGATTCTGCACATGATTTACGTATAAATAGTCCCGATGAAAGTCCATTAAATTCACCGCACGAAATGTCATTAGAGCCGGCGGTTAATTTAGCCGTTGGCGTTAGCGGTATGGCATATAAACCATCCAGGGGTTATTCATCACCACGTCCGGAACATTTATTTCAAGAAGATATTGCCGAATTAGTTGGTAACACATCGTCATCACGTAATTGTCCACCGAATGTACATAGTTTCAAAGAACCATCTTCTAGTATAAAAATGGAACCGATGGCTGAGTGTCGAAGTGAATGa
- Protein Sequence
- MWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDDHIKGVIKTVVFRDAKELKDEGMHLAYGRHSPVFPFQEGAMTYPGPGCANGLSQQQSGSESMSPEATAAAVAAVAHGIRQQMQMAAVAQHHSDGSGNMFTLPSHLHSNNNNNNNNNNNNNNNNNNGGSGSVPLPKQNSPASGGQINSSNSQRHTSLSITGLPNPASLGIPGIPGLHIIPGLSSSNASQTTSHNSTSYSSSNASNLQTSIAPSHIQLNTSSSSSSNPSMHHMQRNESPSDSAHDLRINSPDESPLNSPHEMSLEPAVNLAVGVSGMAYKPSRGYSSPRPEHLFQEDIAELVGNTSSSRNCPPNVHSFKEPSSSIKMEPMAECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -