Xate021511.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730482.1:49939643-49941127[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-13 1.2e-09 38.5 0.0 2 41 303 342 302 346 0.87 2 3 0.31 8e+02 0.7 0.0 27 35 374 382 354 387 0.80 3 3 1.6e-17 4e-14 52.9 0.0 5 43 412 449 410 450 0.95
Sequence Information
- Coding Sequence
- ATGAACCATTTAAAATGGATGGGTCATACGGCCACAGTAATGGAGATCCAAAAAGGCCTACATCAAGATACAAGCTCTTGTGATGTTACATTATCGTGTAAAGGGAAAACTGTACGAGTTCATCGGTTTCTATTATGTGCCTGTAGTGATTATTTCCGTGAGATATTTCAGGGCCTACCAGATCGAGAAGATGTTACAATTATATGTCCAGATATTCGTGAGAATATTATCGAAAGcatattgaattttatatatttcggTGAGGTTTCTGTTAATTCATCGAATTTATCTGATTTCTTAGAAAGTATCAATTTATTGGGCATTAAAAGTGCAATCAGTTTCGAATGTCAtataaataaaacgaaaatctCAAAAGGTTATGCAGCCATTGAAGATTTGAAATCAGCCGaagtgaataaaaatgaaacacaAAATTCACCAGATGATgAAACTACAACAAATTGTGGTACAAAAGATTTCGAATATTTAGAAGTTTATAATGGCGATGATAAAATGGATCAATATGAAATCGAACAGATCGACACAAGTTGTAACGAAACAAATAGTGACTATATTATAacagaaaatgttgaaaattcaTTTACAATATCTGAAGTTAAACAAGATCAAAATATTGCTGATAATAAACATACTCAAACGTCGGAATATGTTGAAACTGTATTACCAGAGAATTCGATTATTCATGAAAAAGAATACAATTTAACAGAAACGacgacaacaacaacatcatctacatcatcatcatcatcaacgaAATTGGCAACATCAAAtaagaaattgaataaaattacaaaaaccaCAACGACCACAGCTGAAACAGCAGCGGCAACTTGTTGTAGTACTAATACAAGTGGTTCTGGTTTAAATCAAACCATTCAAACACGTGATGATGCATTTGAAAATGCTGTTAATGCTGTTATACATTTAGGGATGAGCTTACAGAAGGCGGCTACAAAATTTAATGTAACAAAAACAGTTCTATGGAGACGTGTTAAGAAGAATTCCGCCTATAAAGCTGAACGTGAACATCCAATGTTACGTTCGGCTATTGAGAAATTGGAAAATGGTGAATCGCTGAAAAGTATCAGTCAAGCATTGAATATACCAATATCGACATTGCATCGACAAAAAGTGAAATTACTACAAGAAGGCCGGCTACCAGAACATATGCAAATAAAACGTCGTGATTCAAAGGATCACCTAAGACTTCGTCTTTCAAAAGCAATTGATGAATGTCGTCGTGGCATGTCACAAAATCAAGCTGCCACCATTTATGGTGTACCGAAATCAACTTTATGGCGTCatgttcaaaagaaaaatatgaaacttATAAAAGCTGAAACAATCGAAGAGATTTCTCTTTCCGattaa
- Protein Sequence
- MNHLKWMGHTATVMEIQKGLHQDTSSCDVTLSCKGKTVRVHRFLLCACSDYFREIFQGLPDREDVTIICPDIRENIIESILNFIYFGEVSVNSSNLSDFLESINLLGIKSAISFECHINKTKISKGYAAIEDLKSAEVNKNETQNSPDDETTTNCGTKDFEYLEVYNGDDKMDQYEIEQIDTSCNETNSDYIITENVENSFTISEVKQDQNIADNKHTQTSEYVETVLPENSIIHEKEYNLTETTTTTTSSTSSSSSTKLATSNKKLNKITKTTTTTAETAAATCCSTNTSGSGLNQTIQTRDDAFENAVNAVIHLGMSLQKAATKFNVTKTVLWRRVKKNSAYKAEREHPMLRSAIEKLENGESLKSISQALNIPISTLHRQKVKLLQEGRLPEHMQIKRRDSKDHLRLRLSKAIDECRRGMSQNQAATIYGVPKSTLWRHVQKKNMKLIKAETIEEISLSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540608;
- 90% Identity
- iTF_01540608;
- 80% Identity
- iTF_01540608;